Wall clock time and date at job start Tue Mar 31 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48496 * 109.47402 * 240.00215 * 3 2 1 5 5 H 1.48498 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47172 * 119.99653 * 3 2 1 7 7 C 1.39891 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99940 * 175.59156 * 7 2 1 9 9 C 1.41152 * 120.00374 * 355.59658 * 7 2 1 10 10 C 1.40888 * 120.15647 * 214.75063 * 9 7 2 11 11 C 1.36379 * 119.84456 * 179.73593 * 10 9 7 12 12 C 1.39460 * 120.18056 * 0.55820 * 11 10 9 13 13 N 1.39278 * 119.84001 * 179.71263 * 12 11 10 14 14 C 1.34776 * 119.99728 * 34.73549 * 13 12 11 15 15 O 1.21579 * 119.99971 * 355.75112 * 14 13 12 16 16 N 1.34777 * 119.99653 * 175.74547 * 14 13 12 17 17 C 1.46501 * 119.99748 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47051 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.46734 * 60.00515 * 18 17 16 20 20 O 1.42900 * 109.47048 * 300.00274 * 18 17 16 21 21 C 1.53002 * 109.46766 * 180.02562 * 18 17 16 22 22 F 1.39902 * 109.47024 * 65.00408 * 21 18 17 23 23 F 1.39905 * 109.46486 * 184.99927 * 21 18 17 24 24 C 1.39587 * 120.32250 * 359.44270 * 12 11 10 25 25 Cl 1.73595 * 119.92549 * 180.30003 * 24 12 11 26 26 C 1.36475 * 120.14287 * 0.27187 * 24 12 11 27 27 H 0.97000 * 120.00291 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.07705 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.90695 * 180.26770 * 11 10 9 30 30 H 0.97001 * 120.00121 * 214.73226 * 13 12 11 31 31 H 0.96996 * 120.00466 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47088 * 60.00459 * 17 16 14 33 33 H 1.09003 * 109.46962 * 300.00323 * 17 16 14 34 34 H 0.96698 * 113.99894 * 299.99530 * 20 18 17 35 35 H 1.08993 * 109.47226 * 304.99984 * 21 18 17 36 36 H 1.08002 * 120.08403 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0082 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0714 9 6 1.3056 -2.4321 0.0949 10 6 1.8650 -3.5184 0.7964 11 6 1.1782 -4.6930 0.8882 12 6 -0.0699 -4.8248 0.2801 13 7 -0.7624 -6.0297 0.3733 14 6 -0.6754 -6.7719 1.4949 15 8 0.0673 -6.4293 2.3944 16 7 -1.4119 -7.8937 1.6193 17 6 -1.3169 -8.7008 2.8383 18 6 -2.2476 -9.9098 2.7232 19 1 -1.9545 -10.5134 1.8641 20 8 -3.5934 -9.4605 2.5530 21 6 -2.1488 -10.7523 3.9965 22 9 -2.6328 -10.0148 5.0824 23 9 -2.9112 -11.9157 3.8461 24 6 -0.6310 -3.7534 -0.4167 25 17 -2.1887 -3.9263 -1.1631 26 6 0.0422 -2.5700 -0.5120 27 1 -0.4850 0.8400 -0.0004 28 1 2.8334 -3.4195 1.2643 29 1 1.6042 -5.5250 1.4293 30 1 -1.3073 -6.3345 -0.3690 31 1 -2.0042 -8.1672 0.9015 32 1 -1.6095 -8.0972 3.6974 33 1 -0.2905 -9.0439 2.9678 34 1 -3.9215 -8.9163 3.2818 35 1 -1.1076 -11.0208 4.1747 36 1 -0.3927 -1.7417 -1.0517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455696316.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:21 Heat of formation + Delta-G solvation = -169.754718 kcal Electronic energy + Delta-G solvation = -25528.908237 eV Core-core repulsion = 21095.332743 eV Total energy + Delta-G solvation = -4433.575494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.43048 -47.43824 -40.11780 -38.27447 -37.44316 -35.52181 -34.69282 -34.21366 -33.01281 -30.94191 -29.45283 -28.92422 -26.24586 -24.72112 -22.56476 -21.86472 -21.04977 -20.27655 -18.34074 -18.28791 -18.13288 -17.59742 -17.40956 -16.74854 -15.98263 -15.58570 -15.35033 -14.89720 -14.82362 -14.30164 -14.22755 -14.09065 -13.77651 -13.59046 -13.41800 -12.95646 -12.86364 -12.70477 -12.51564 -12.28192 -11.67356 -11.58588 -11.43162 -11.14761 -10.95151 -10.65261 -10.58661 -10.35488 -10.09640 -9.77632 -9.63396 -9.34594 -9.12692 -8.99021 -7.55416 -7.00631 -6.71859 -4.46824 2.41826 2.61606 2.85013 3.05218 3.06669 3.09178 3.17062 3.34946 3.56623 3.59693 3.73937 3.84914 3.91157 4.21424 4.52166 4.56719 4.59120 4.73143 5.25696 5.41758 5.44294 6.16324 6.36247 6.47895 6.62049 6.84630 6.93812 6.95828 7.07453 7.21531 7.33535 7.66142 7.69112 7.90820 8.10117 8.30782 8.42870 8.74014 8.79369 8.93473 10.18594 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.002413 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.801467 B =11602.552185 C =12211.442836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.069 3.931 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.107 3.893 10 C -0.201 4.201 11 C -0.075 4.075 12 C 0.030 3.970 13 N -0.662 5.662 14 C 0.699 3.301 15 O -0.577 6.577 16 N -0.745 5.745 17 C 0.110 3.890 18 C 0.052 3.948 19 H 0.135 0.865 20 O -0.542 6.542 21 C 0.236 3.764 22 F -0.200 7.200 23 F -0.196 7.196 24 C -0.023 4.023 25 Cl -0.120 7.120 26 C -0.136 4.136 27 H 0.282 0.718 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.395 0.605 31 H 0.399 0.601 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.387 0.613 35 H 0.122 0.878 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 -16.369 2.764 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.147 4.147 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.104 3.896 10 C -0.221 4.221 11 C -0.095 4.095 12 C -0.064 4.064 13 N -0.309 5.309 14 C 0.400 3.600 15 O -0.454 6.454 16 N -0.404 5.404 17 C -0.016 4.016 18 C -0.010 4.010 19 H 0.152 0.848 20 O -0.348 6.348 21 C 0.181 3.819 22 F -0.181 7.181 23 F -0.178 7.178 24 C -0.051 4.051 25 Cl -0.092 7.092 26 C -0.156 4.156 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.230 0.770 31 H 0.234 0.766 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.236 0.764 35 H 0.139 0.861 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.111 -16.242 3.022 17.025 hybrid contribution -0.588 0.715 -0.001 0.926 sum -4.700 -15.527 3.021 16.502 Atomic orbital electron populations 1.69726 1.07316 1.29268 1.36809 1.25923 0.94992 1.01381 0.92429 0.86193 0.79782 0.79852 0.79853 1.18944 1.20345 1.18992 1.19460 0.94877 0.89910 1.44392 0.90167 1.17598 0.91302 0.92377 0.88343 1.20899 1.01446 0.94734 1.05037 1.20406 0.91912 0.98319 0.98897 1.16691 0.93981 0.84506 1.11249 1.41998 1.51355 1.21614 1.15893 1.15899 0.81209 0.79937 0.82984 1.90913 1.42095 1.71572 1.40866 1.44799 1.48504 1.26526 1.20522 1.21657 0.99885 0.91296 0.88776 1.23343 0.84752 0.95341 0.97516 0.84786 1.86628 1.26284 1.72455 1.49416 1.22602 0.94437 0.79345 0.85531 1.93004 1.90366 1.77461 1.57293 1.93023 1.79074 1.49777 1.95887 1.20413 0.86161 0.95411 1.03146 1.98250 1.30705 1.97924 1.82283 1.21191 0.97220 0.94458 1.02739 0.90729 0.87900 0.86288 0.77025 0.76635 0.90302 0.90020 0.76371 0.86074 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.37 10.59 55.54 0.59 -19.78 16 2 C 0.07 1.69 5.42 -17.34 -0.09 1.59 16 3 Si 0.92 18.39 29.56 -169.99 -5.03 13.36 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.62 9.02 -37.86 -0.34 -11.96 16 8 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.11 2.74 5.55 -106.81 -0.59 2.15 16 10 C -0.20 -4.81 9.74 -39.25 -0.38 -5.20 16 11 C -0.08 -1.71 8.61 -39.80 -0.34 -2.05 16 12 C 0.03 0.64 6.32 -83.52 -0.53 0.12 16 13 N -0.66 -11.53 5.02 -14.07 -0.07 -11.60 16 14 C 0.70 11.76 8.40 -86.92 -0.73 11.03 16 15 O -0.58 -11.97 13.73 5.30 0.07 -11.90 16 16 N -0.75 -8.53 5.45 -65.22 -0.36 -8.89 16 17 C 0.11 0.98 5.25 -4.04 -0.02 0.96 16 18 C 0.05 0.34 3.25 -26.73 -0.09 0.25 16 19 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 20 O -0.54 -4.44 13.07 -35.23 -0.46 -4.90 16 21 C 0.24 1.48 4.99 37.16 0.19 1.66 16 22 F -0.20 -1.67 16.48 2.25 0.04 -1.63 16 23 F -0.20 -1.69 17.33 2.25 0.04 -1.65 16 24 C -0.02 -0.52 6.30 -39.71 -0.25 -0.77 16 25 Cl -0.12 -2.28 27.92 -51.86 -1.45 -3.73 16 26 C -0.14 -3.39 8.38 -39.24 -0.33 -3.72 16 27 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 28 H 0.10 2.31 8.06 -52.48 -0.42 1.88 16 29 H 0.12 2.66 6.18 -52.48 -0.32 2.34 16 30 H 0.40 5.80 8.07 -40.82 -0.33 5.47 16 31 H 0.40 3.72 8.37 -40.82 -0.34 3.38 16 32 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.39 2.51 8.55 45.56 0.39 2.90 16 35 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.14 3.76 6.13 -52.49 -0.32 3.44 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -30.65 335.57 -7.65 -38.30 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -2.58 Total: 13.29 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -3.51 Total: -5.94 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.16 Total: -40.27 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.39 Total: -16.79 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.08 Total: -3.28 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -1.45 Total: -3.73 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.65 -7.65 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455696316.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.455 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds