Wall clock time and date at job start Tue Mar 31 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48496 * 109.47402 * 240.00215 * 3 2 1 5 5 H 1.48498 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47172 * 119.99653 * 3 2 1 7 7 C 1.39891 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99940 * 175.59156 * 7 2 1 9 9 C 1.41152 * 120.00374 * 355.59658 * 7 2 1 10 10 C 1.40888 * 120.15647 * 214.75063 * 9 7 2 11 11 C 1.36379 * 119.84456 * 179.73593 * 10 9 7 12 12 C 1.39460 * 120.18056 * 0.55820 * 11 10 9 13 13 N 1.39278 * 119.84001 * 179.71263 * 12 11 10 14 14 C 1.34776 * 119.99728 * 34.73549 * 13 12 11 15 15 O 1.21579 * 119.99971 * 355.75112 * 14 13 12 16 16 N 1.34777 * 119.99653 * 175.74547 * 14 13 12 17 17 C 1.46501 * 119.99748 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47051 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.46734 * 60.00515 * 18 17 16 20 20 O 1.42900 * 109.47048 * 300.00274 * 18 17 16 21 21 C 1.53002 * 109.46766 * 180.02562 * 18 17 16 22 22 F 1.39902 * 109.47024 * 65.00408 * 21 18 17 23 23 F 1.39905 * 109.46486 * 184.99927 * 21 18 17 24 24 C 1.39587 * 120.32250 * 359.44270 * 12 11 10 25 25 Cl 1.73595 * 119.92549 * 180.30003 * 24 12 11 26 26 C 1.36475 * 120.14287 * 0.27187 * 24 12 11 27 27 H 0.97000 * 120.00291 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.07705 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.90695 * 180.26770 * 11 10 9 30 30 H 0.97001 * 120.00121 * 214.73226 * 13 12 11 31 31 H 0.96996 * 120.00466 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47088 * 60.00459 * 17 16 14 33 33 H 1.09003 * 109.46962 * 300.00323 * 17 16 14 34 34 H 0.96698 * 113.99894 * 299.99530 * 20 18 17 35 35 H 1.08993 * 109.47226 * 304.99984 * 21 18 17 36 36 H 1.08002 * 120.08403 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0082 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0714 9 6 1.3056 -2.4321 0.0949 10 6 1.8650 -3.5184 0.7964 11 6 1.1782 -4.6930 0.8882 12 6 -0.0699 -4.8248 0.2801 13 7 -0.7624 -6.0297 0.3733 14 6 -0.6754 -6.7719 1.4949 15 8 0.0673 -6.4293 2.3944 16 7 -1.4119 -7.8937 1.6193 17 6 -1.3169 -8.7008 2.8383 18 6 -2.2476 -9.9098 2.7232 19 1 -1.9545 -10.5134 1.8641 20 8 -3.5934 -9.4605 2.5530 21 6 -2.1488 -10.7523 3.9965 22 9 -2.6328 -10.0148 5.0824 23 9 -2.9112 -11.9157 3.8461 24 6 -0.6310 -3.7534 -0.4167 25 17 -2.1887 -3.9263 -1.1631 26 6 0.0422 -2.5700 -0.5120 27 1 -0.4850 0.8400 -0.0004 28 1 2.8334 -3.4195 1.2643 29 1 1.6042 -5.5250 1.4293 30 1 -1.3073 -6.3345 -0.3690 31 1 -2.0042 -8.1672 0.9015 32 1 -1.6095 -8.0972 3.6974 33 1 -0.2905 -9.0439 2.9678 34 1 -3.9215 -8.9163 3.2818 35 1 -1.1076 -11.0208 4.1747 36 1 -0.3927 -1.7417 -1.0517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455696316.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:21 Heat of formation + Delta-G solvation = -191.594386 kcal Electronic energy + Delta-G solvation = -25529.855276 eV Core-core repulsion = 21095.332743 eV Total energy + Delta-G solvation = -4434.522533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.99624 -48.02181 -41.50370 -39.57716 -38.55259 -37.21079 -36.19521 -35.41499 -34.68672 -31.79779 -31.26788 -30.56113 -27.40911 -26.11261 -23.65318 -23.09036 -22.70874 -21.74170 -19.66086 -19.20375 -19.03133 -18.69943 -18.29907 -18.00551 -17.18271 -16.86629 -16.39237 -16.10988 -15.99476 -15.85432 -15.41921 -14.98692 -14.84248 -14.68725 -14.37578 -14.34683 -14.13355 -14.06930 -13.62207 -13.42233 -13.28558 -13.15850 -12.78526 -12.65702 -12.28091 -12.15279 -11.96887 -11.75264 -11.56551 -11.31003 -11.20658 -11.01039 -10.72799 -10.17577 -9.37171 -8.77044 -8.52335 -6.36563 0.66817 0.99059 1.39952 1.42402 1.48831 1.53928 1.60311 2.15436 2.24826 2.65961 2.76569 3.08377 3.23698 3.24970 3.41427 3.56566 3.76308 4.04217 4.13601 4.37266 4.55205 4.71167 4.76667 4.94163 5.02261 5.22624 5.30533 5.36260 5.49685 5.66660 5.88775 5.98326 6.14317 6.26058 6.41696 6.54854 6.89269 6.92275 7.03978 7.57194 8.39458 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.002413 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.801467 B =11602.552185 C =12211.442836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.489 4.489 8 H 0.082 0.918 9 C 0.077 3.923 10 C -0.209 4.209 11 C -0.082 4.082 12 C 0.045 3.955 13 N -0.659 5.659 14 C 0.698 3.302 15 O -0.617 6.617 16 N -0.723 5.723 17 C 0.107 3.893 18 C 0.063 3.937 19 H 0.155 0.845 20 O -0.557 6.557 21 C 0.233 3.767 22 F -0.214 7.214 23 F -0.209 7.209 24 C -0.031 4.031 25 Cl -0.088 7.088 26 C -0.153 4.153 27 H 0.286 0.714 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.410 0.590 31 H 0.413 0.587 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.392 0.608 35 H 0.159 0.841 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 -17.685 2.734 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.519 4.519 8 H 0.100 0.900 9 C 0.074 3.926 10 C -0.229 4.229 11 C -0.102 4.102 12 C -0.050 4.050 13 N -0.306 5.306 14 C 0.398 3.602 15 O -0.497 6.497 16 N -0.381 5.381 17 C -0.018 4.018 18 C 0.003 3.997 19 H 0.173 0.827 20 O -0.364 6.364 21 C 0.178 3.822 22 F -0.195 7.195 23 F -0.190 7.190 24 C -0.060 4.060 25 Cl -0.060 7.060 26 C -0.174 4.174 27 H 0.097 0.903 28 H 0.128 0.872 29 H 0.142 0.858 30 H 0.247 0.753 31 H 0.250 0.750 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.243 0.757 35 H 0.176 0.824 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.521 -17.632 2.975 18.444 hybrid contribution -0.597 0.920 0.023 1.097 sum -5.118 -16.712 2.998 17.733 Atomic orbital electron populations 1.69808 1.08662 1.30282 1.37655 1.26766 0.95751 1.04452 0.91505 0.85136 0.78459 0.75464 0.79954 1.18153 1.19596 1.18772 1.19714 0.95180 0.90813 1.46206 0.90013 1.17904 0.92175 0.93170 0.89354 1.21054 1.01921 0.94933 1.05022 1.20527 0.92463 0.98089 0.99154 1.16723 0.93544 0.85613 1.09118 1.41859 1.51283 1.20489 1.17010 1.16041 0.81225 0.80770 0.82122 1.90891 1.43926 1.72824 1.42045 1.44623 1.47029 1.24749 1.21674 1.21832 1.01313 0.91631 0.87014 1.23343 0.83434 0.94303 0.98639 0.82727 1.86606 1.27052 1.72689 1.50054 1.22942 0.95823 0.78636 0.84755 1.92979 1.90691 1.77828 1.58021 1.92998 1.79669 1.50460 1.95912 1.20437 0.87426 0.94876 1.03227 1.98247 1.28281 1.97799 1.81667 1.21086 0.97682 0.95031 1.03561 0.90314 0.87237 0.85783 0.75276 0.74987 0.91530 0.88876 0.75734 0.82428 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.32 10.59 21.82 0.23 -43.08 16 2 C 0.03 1.39 5.42 85.24 0.46 1.86 16 3 Si 0.99 37.91 29.56 68.60 2.03 39.94 16 4 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.49 -25.62 9.02 23.39 0.21 -25.41 16 8 H 0.08 4.07 7.85 -2.91 -0.02 4.05 16 9 C 0.08 4.07 5.55 -21.28 -0.12 3.95 16 10 C -0.21 -10.23 9.74 22.48 0.22 -10.01 16 11 C -0.08 -3.74 8.61 22.13 0.19 -3.55 16 12 C 0.05 1.94 6.32 38.58 0.24 2.19 16 13 N -0.66 -21.87 5.02 -316.69 -1.59 -23.46 16 14 C 0.70 22.29 8.40 179.05 1.50 23.79 16 15 O -0.62 -24.97 13.73 -3.96 -0.05 -25.02 16 16 N -0.72 -14.77 5.45 -478.54 -2.61 -17.38 16 17 C 0.11 1.66 5.25 86.38 0.45 2.11 16 18 C 0.06 0.65 3.25 30.60 0.10 0.75 16 19 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 20 O -0.56 -7.87 13.07 -148.98 -1.95 -9.82 16 21 C 0.23 2.32 4.99 71.98 0.36 2.68 16 22 F -0.21 -3.22 16.48 44.97 0.74 -2.48 16 23 F -0.21 -3.14 17.33 44.97 0.78 -2.36 16 24 C -0.03 -1.39 6.30 22.18 0.14 -1.25 16 25 Cl -0.09 -3.27 27.92 -2.72 -0.08 -3.34 16 26 C -0.15 -7.83 8.38 22.49 0.19 -7.64 16 27 H 0.29 13.57 8.30 -92.71 -0.77 12.81 16 28 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 29 H 0.12 5.53 6.18 -2.91 -0.02 5.51 16 30 H 0.41 11.09 8.07 -92.71 -0.75 10.35 16 31 H 0.41 6.41 8.37 -92.71 -0.78 5.63 16 32 H 0.07 1.26 7.93 -2.39 -0.02 1.24 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.39 4.47 8.55 -74.06 -0.63 3.83 16 35 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.13 6.88 6.13 -2.91 -0.02 6.86 16 Total: -1.00 -67.29 335.57 0.49 -66.80 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.96 Total: 30.73 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 3.95 Total: -10.54 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -3.97 Total: -83.92 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -2.00 Total: -34.84 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.52 Total: -4.84 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 17 Polarization: -3.27 SS G_CDS: -0.08 Total: -3.34 kcal Total: -67.29 0.49 -66.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455696316.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.793 kcal (2) G-P(sol) polarization free energy of solvation -67.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds