Wall clock time and date at job start Tue Mar 31 2020 17:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46775 * 185.24636 * 3 2 1 5 5 C 1.33234 * 119.99487 * 263.09572 * 4 3 2 6 6 H 1.08004 * 119.99571 * 201.65766 * 5 4 3 7 7 C 1.46795 * 120.00339 * 21.66883 * 5 4 3 8 8 N 1.29314 * 119.99965 * 9.77744 * 7 5 4 9 9 Si 1.86793 * 120.00008 * 189.78360 * 7 5 4 10 10 H 1.48506 * 109.47416 * 59.99559 * 9 7 5 11 11 H 1.48493 * 109.47492 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47179 * 299.99800 * 9 7 5 13 13 C 1.34764 * 120.00072 * 83.09865 * 4 3 2 14 14 O 1.21652 * 120.00148 * 179.97438 * 13 4 3 15 15 C 1.46122 * 120.00157 * 359.97438 * 13 4 3 16 16 C 1.35091 * 119.99833 * 173.37626 * 15 13 4 17 17 C 1.47061 * 120.00415 * 348.73876 * 16 15 13 18 18 C 1.39951 * 120.15700 * 314.80473 * 17 16 15 19 19 C 1.37794 * 119.82949 * 179.71649 * 18 17 16 20 20 C 1.38592 * 120.16795 * 0.56079 * 19 18 17 21 21 Cl 1.73591 * 119.83852 * 179.74020 * 20 19 18 22 22 C 1.38550 * 120.32121 * 359.71476 * 20 19 18 23 23 N 1.48010 * 119.91608 * 180.02562 * 22 20 19 24 24 O 1.31702 * 120.00191 * 179.97438 * 23 22 20 25 25 O 1.31704 * 120.00008 * 359.97438 * 23 22 20 26 26 C 1.37834 * 120.16325 * 359.97438 * 22 20 19 27 27 H 4.40637 * 5.51390 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.47156 * 65.25004 * 3 2 1 29 29 H 1.08993 * 109.47049 * 305.24206 * 3 2 1 30 30 H 0.96997 * 119.99937 * 180.02562 * 8 7 5 31 31 H 1.08002 * 119.99670 * 353.09971 * 15 13 4 32 32 H 1.08004 * 119.99798 * 168.73617 * 16 15 13 33 33 H 1.07998 * 120.08330 * 359.97438 * 18 17 16 34 34 H 1.08007 * 119.91534 * 180.25535 * 19 18 17 35 35 H 1.08003 * 120.08172 * 179.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3764 0.1263 5 6 3.4861 2.0606 -0.9612 6 1 4.1535 2.9054 -0.8749 7 6 2.9672 1.6665 -2.2766 8 7 2.0271 0.7827 -2.3626 9 14 3.6651 2.4414 -3.8264 10 1 5.1192 2.1523 -3.9129 11 1 2.9771 1.8770 -5.0151 12 1 3.4544 3.9107 -3.7832 13 6 3.2258 1.9497 1.3424 14 8 3.6311 3.0919 1.4474 15 6 2.8387 1.1994 2.5351 16 6 3.0556 1.7220 3.7618 17 6 3.8959 2.9194 3.9129 18 6 5.1146 3.0136 3.2313 19 6 5.8939 4.1411 3.3732 20 6 5.4792 5.1752 4.1976 21 17 6.4709 6.5888 4.3754 22 6 4.2767 5.0864 4.8800 23 7 3.8423 6.1963 5.7576 24 8 2.6993 6.1138 6.4067 25 8 4.5987 7.2663 5.8894 26 6 3.4835 3.9675 4.7429 27 1 -1.0502 -0.0004 -0.0002 28 1 3.0095 -0.4294 -0.9333 29 1 3.0096 -0.5921 0.8393 30 1 1.6845 0.5221 -3.2317 31 1 2.3752 0.2290 2.4357 32 1 2.6117 1.2606 4.6315 33 1 5.4414 2.2066 2.5924 34 1 6.8327 4.2171 2.8446 35 1 2.5466 3.8995 5.2758 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491020974.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:29 Heat of formation + Delta-G solvation = 111.024908 kcal Electronic energy + Delta-G solvation = -25350.885009 eV Core-core repulsion = 21347.881469 eV Total energy + Delta-G solvation = -4003.003541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.46053 -40.55465 -39.35006 -37.93157 -37.08508 -35.56301 -34.75471 -34.18469 -33.19531 -32.89141 -31.01170 -28.30721 -27.75471 -26.84056 -24.63728 -23.88021 -22.56037 -20.41532 -19.80724 -19.27166 -19.18531 -18.30723 -18.08887 -17.90149 -17.21391 -16.85634 -16.63683 -16.01546 -15.81274 -15.44773 -15.07910 -14.82152 -14.35988 -14.25570 -14.17311 -13.79615 -13.50626 -13.33221 -13.16021 -12.86346 -12.78148 -12.64788 -12.50617 -12.41105 -12.16390 -11.88109 -11.40267 -11.33883 -11.10005 -11.05661 -10.64689 -10.55183 -10.15938 -9.96646 -9.31274 -8.52027 -5.77616 -1.84196 -0.53549 -0.05681 0.07865 0.62166 0.69810 1.40006 1.41760 1.47287 2.03402 2.22761 2.26742 2.35078 2.48777 3.07996 3.09963 3.28135 3.42459 3.72891 3.79305 3.85253 3.86977 4.18912 4.30053 4.36413 4.59182 4.64538 4.70780 4.79147 4.94084 4.99628 5.19997 5.28348 5.33536 5.40791 5.47073 5.58923 6.01763 6.37199 7.09023 7.14536 7.41054 8.11874 8.42363 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.003442 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.400911 B = 8131.705933 C = 9238.685921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.156 4.156 3 C 0.221 3.779 4 N -0.401 5.401 5 C -0.378 4.378 6 H 0.084 0.916 7 C 0.016 3.984 8 N -0.830 5.830 9 Si 0.985 3.015 10 H -0.261 1.261 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.417 3.583 14 O -0.623 6.623 15 C -0.159 4.159 16 C -0.077 4.077 17 C -0.036 4.036 18 C 0.039 3.961 19 C -0.123 4.123 20 C 0.015 3.985 21 Cl -0.014 7.014 22 C -0.032 4.032 23 N -0.008 5.008 24 O -0.210 6.210 25 O -0.177 6.177 26 C -0.038 4.038 27 H 0.231 0.769 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.286 0.714 31 H 0.149 0.851 32 H 0.179 0.821 33 H 0.147 0.853 34 H 0.174 0.826 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -5.005 7.789 10.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.157 4.157 3 C 0.099 3.901 4 N -0.112 5.112 5 C -0.507 4.507 6 H 0.101 0.899 7 C -0.197 4.197 8 N -0.461 5.461 9 Si 0.809 3.191 10 H -0.185 1.185 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.212 3.788 14 O -0.514 6.514 15 C -0.180 4.180 16 C -0.097 4.097 17 C -0.037 4.037 18 C 0.020 3.980 19 C -0.142 4.142 20 C -0.014 4.014 21 Cl 0.015 6.985 22 C -0.120 4.120 23 N 0.464 4.536 24 O -0.395 6.395 25 O -0.370 6.370 26 C -0.057 4.057 27 H 0.247 0.753 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.166 0.834 32 H 0.197 0.803 33 H 0.165 0.835 34 H 0.191 0.809 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.650 -4.973 7.250 9.946 hybrid contribution -0.349 1.111 -0.963 1.511 sum 4.300 -3.862 6.287 8.540 Atomic orbital electron populations 1.25182 0.96445 1.00223 1.04448 1.23430 0.94968 1.00053 0.97258 1.18580 0.84489 0.83773 1.03220 1.42840 1.51176 1.11261 1.05937 1.20405 1.29262 1.16194 0.84847 0.89866 1.27568 0.94295 0.96147 1.01686 1.69048 1.21496 1.27774 1.27828 0.85118 0.79315 0.78222 0.76464 1.18514 1.19394 1.20795 1.18693 0.88088 0.87407 0.84605 1.90587 1.54947 1.20150 1.85762 1.23269 1.02412 1.00376 0.91935 1.22289 0.96405 0.93028 0.98010 1.19094 0.94957 0.94909 0.94748 1.21812 0.90724 0.96834 0.88669 1.21211 1.03007 0.91524 0.98452 1.21009 0.90888 0.92027 0.97486 1.98434 1.67431 1.36703 1.95885 1.20035 0.99022 0.90025 1.02965 1.50497 1.01146 1.02685 0.99307 1.96231 1.06889 1.88738 1.47641 1.96287 1.50749 1.18998 1.71006 1.21239 0.99005 0.89189 0.96305 0.75275 0.88152 0.87881 0.90196 0.83375 0.80344 0.83525 0.80851 0.81158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.55 19.25 74.32 1.43 -7.12 16 2 C -0.16 -5.96 11.06 31.13 0.34 -5.62 16 3 C 0.22 8.30 4.77 84.57 0.40 8.70 16 4 N -0.40 -17.71 2.51 -645.68 -1.62 -19.33 16 5 C -0.38 -18.72 9.52 86.72 0.83 -17.90 16 6 H 0.08 4.47 7.42 -2.91 -0.02 4.45 16 7 C 0.02 0.74 5.27 87.30 0.46 1.20 16 8 N -0.83 -37.66 9.15 23.26 0.21 -37.45 16 9 Si 0.99 37.44 29.65 68.60 2.03 39.48 16 10 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 11 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 12 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 13 C 0.42 17.20 6.56 86.29 0.57 17.77 16 14 O -0.62 -29.12 11.90 -4.20 -0.05 -29.17 16 15 C -0.16 -4.72 8.89 23.59 0.21 -4.51 16 16 C -0.08 -1.86 9.80 23.86 0.23 -1.62 16 17 C -0.04 -1.01 4.47 -20.14 -0.09 -1.10 16 18 C 0.04 1.12 6.66 22.58 0.15 1.27 16 19 C -0.12 -3.35 9.81 22.25 0.22 -3.13 16 20 C 0.01 0.45 6.33 22.43 0.14 0.59 16 21 Cl -0.01 -0.40 25.74 -2.72 -0.07 -0.47 16 22 C -0.03 -1.02 6.88 36.36 0.25 -0.77 16 23 N -0.01 -0.28 4.98 -46.52 -0.23 -0.52 16 24 O -0.21 -7.59 19.14 3.51 0.07 -7.53 16 25 O -0.18 -6.39 16.57 3.51 0.06 -6.34 16 26 C -0.04 -1.09 9.32 22.58 0.21 -0.88 16 27 H 0.23 6.18 7.80 -4.41 -0.03 6.14 16 28 H 0.10 4.06 6.28 -2.39 -0.01 4.05 16 29 H 0.10 2.97 6.61 -2.39 -0.02 2.96 16 30 H 0.29 12.19 8.26 -92.71 -0.77 11.43 16 31 H 0.15 3.68 6.21 -2.91 -0.02 3.66 16 32 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.15 4.13 7.18 -2.91 -0.02 4.11 16 34 H 0.17 3.82 8.06 -2.91 -0.02 3.79 16 35 H 0.17 4.29 7.57 -2.91 -0.02 4.27 16 Total: -1.00 -62.22 333.03 6.92 -55.30 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.16 Total: 19.14 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 5.36 Total: -13.12 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -1.64 Total: -57.29 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: 0.08 Total: -43.03 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.07 Total: -0.47 kcal Total: -62.22 6.92 -55.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491020974.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.324 kcal (2) G-P(sol) polarization free energy of solvation -62.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds