Wall clock time and date at job start Tue Mar 31 2020 18:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39771 * 120.07038 * 64.36127 * 3 2 1 5 5 C 1.38084 * 120.19582 * 179.97438 * 4 3 2 6 6 C 1.38038 * 120.33066 * 0.02562 * 5 4 3 7 7 C 1.39897 * 120.13227 * 359.97438 * 6 5 4 8 8 C 1.47240 * 120.09733 * 180.02562 * 7 6 5 9 9 C 1.34795 * 119.99976 * 136.33896 * 8 7 6 10 10 C 1.46428 * 120.00093 * 349.02283 * 9 8 7 11 11 O 1.21698 * 120.00291 * 353.22789 * 10 9 8 12 12 N 1.34779 * 120.00002 * 172.95009 * 10 9 8 13 13 S 1.65604 * 119.99822 * 180.27988 * 12 10 9 14 14 O 1.42104 * 104.27212 * 181.06997 * 13 12 10 15 15 O 1.42096 * 104.27775 * 308.92564 * 13 12 10 16 16 C 1.81399 * 104.45053 * 64.99881 * 13 12 10 17 17 C 1.53002 * 109.46832 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.46968 * 179.97438 * 17 16 13 19 19 H 1.07995 * 119.99988 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99892 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00082 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99914 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47214 * 59.99534 * 22 20 18 24 24 H 1.48495 * 109.46768 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46800 * 299.99886 * 22 20 18 26 26 C 1.39302 * 120.06377 * 244.63375 * 3 2 1 27 27 H 1.08001 * 119.90667 * 359.97348 * 4 3 2 28 28 H 1.08000 * 119.83700 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.93195 * 180.02562 * 6 5 4 30 30 H 1.07994 * 119.99859 * 316.33391 * 8 7 6 31 31 H 1.07998 * 120.00056 * 169.02645 * 9 8 7 32 32 H 0.96998 * 120.00096 * 0.27406 * 12 10 9 33 33 H 1.08996 * 109.47062 * 299.99683 * 16 13 12 34 34 H 1.08994 * 109.47057 * 60.00056 * 16 13 12 35 35 H 1.08996 * 109.47175 * 299.99782 * 17 16 13 36 36 H 1.09002 * 109.47194 * 59.99957 * 17 16 13 37 37 H 0.96998 * 119.99708 * 180.02562 * 21 20 18 38 38 H 1.08000 * 120.16966 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2686 -0.5224 -1.0905 5 6 4.6495 -0.5226 -1.0935 6 6 5.3489 -0.0075 -0.0207 7 6 4.6617 0.5196 1.0780 8 6 5.4086 1.0694 2.2216 9 6 5.0220 2.2325 2.7826 10 6 4.0203 3.0686 2.1180 11 8 3.6275 2.7779 1.0035 12 7 3.5291 4.1571 2.7429 13 16 2.3911 5.0987 1.9941 14 8 2.1359 6.1443 2.9220 15 8 2.9490 5.3732 0.7164 16 6 0.9420 4.0189 1.8374 17 6 -0.1923 4.7839 1.1524 18 6 -1.3960 3.8866 1.0216 19 1 -1.3561 2.8724 1.3905 20 6 -2.5482 4.3606 0.4310 21 7 -2.5969 5.5959 -0.0178 22 14 -4.0405 3.2486 0.2695 23 1 -4.4819 2.8134 1.6188 24 1 -5.1413 3.9910 -0.3954 25 1 -3.6846 2.0575 -0.5430 26 6 3.2657 0.5174 1.0894 27 1 2.7285 -0.9277 -1.9333 28 1 5.1850 -0.9287 -1.9389 29 1 6.4289 -0.0105 -0.0300 30 1 6.2660 0.5408 2.6110 31 1 5.4511 2.5478 3.7221 32 1 3.8421 4.3888 3.6313 33 1 1.2031 3.1447 1.2410 34 1 0.6180 3.6995 2.8279 35 1 -0.4533 5.6578 1.7491 36 1 0.1314 5.1037 0.1619 37 1 -3.4076 5.9294 -0.4330 38 1 2.7293 0.9184 1.9367 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492802437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:07 Heat of formation + Delta-G solvation = -28.461659 kcal Electronic energy + Delta-G solvation = -26195.573384 eV Core-core repulsion = 22324.398053 eV Total energy + Delta-G solvation = -3871.175331 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62489 -39.11587 -36.72600 -36.27392 -35.62975 -34.52852 -34.21511 -33.85994 -31.43256 -31.15460 -30.04752 -25.62006 -24.97413 -23.94091 -22.61577 -21.62780 -20.36082 -19.35062 -18.97833 -17.65192 -17.07959 -16.59078 -16.52798 -15.82854 -15.61675 -15.20974 -14.93064 -14.82553 -14.51062 -14.32953 -13.98637 -13.78714 -13.44108 -13.06568 -12.95307 -12.65038 -12.49940 -12.38664 -12.20709 -11.79659 -11.73345 -11.67373 -11.62204 -11.38442 -11.01802 -10.97269 -10.84022 -10.47080 -10.37877 -10.34478 -10.19355 -9.67119 -9.16197 -8.95420 -8.51201 -8.43687 -6.06913 -4.11559 0.28029 0.49093 0.83345 1.50652 2.64446 2.82113 2.91190 3.07143 3.34636 3.37675 3.44032 3.85279 3.99213 4.02289 4.20223 4.33734 4.44381 4.61605 4.68423 4.80571 4.90200 4.96364 4.98307 5.24502 5.28818 5.46093 5.57005 5.59953 5.69810 5.73921 5.78858 6.11347 6.18724 6.22069 6.45187 6.61946 6.66799 7.30351 7.36851 7.45269 7.72390 7.87012 8.21216 8.91232 9.53465 11.04115 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.005020 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.648711 B = 5576.386737 C = 7759.234598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.235 3.765 3 C -0.024 4.024 4 C -0.060 4.060 5 C -0.130 4.130 6 C -0.070 4.070 7 C -0.083 4.083 8 C -0.006 4.006 9 C -0.215 4.215 10 C 0.556 3.444 11 O -0.482 6.482 12 N -1.055 6.055 13 S 2.565 3.435 14 O -0.955 6.955 15 O -0.936 6.936 16 C -0.575 4.575 17 C 0.032 3.968 18 C -0.515 4.515 19 H 0.061 0.939 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.896 3.104 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.003 4.003 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.428 0.572 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.734 -13.140 6.044 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.065 5.065 2 C -0.081 4.081 3 C -0.028 4.028 4 C -0.080 4.080 5 C -0.148 4.148 6 C -0.089 4.089 7 C -0.083 4.083 8 C -0.025 4.025 9 C -0.238 4.238 10 C 0.346 3.654 11 O -0.355 6.355 12 N -0.816 5.816 13 S 2.665 3.335 14 O -0.945 6.945 15 O -0.926 6.926 16 C -0.709 4.709 17 C -0.007 4.007 18 C -0.554 4.554 19 H 0.079 0.921 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.723 3.277 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.024 4.024 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.263 0.737 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.753 -12.294 4.877 23.772 hybrid contribution -0.476 -0.712 0.567 1.027 sum 19.277 -13.006 5.443 23.882 Atomic orbital electron populations 1.81381 1.11761 1.07178 1.06145 1.25676 0.92635 0.94802 0.95006 1.15793 0.84614 1.05276 0.97106 1.21257 0.94439 0.96049 0.96257 1.20904 0.93474 1.01473 0.98941 1.21354 0.99897 0.95125 0.92527 1.18740 0.92578 1.01338 0.95692 1.22468 0.95314 0.93405 0.91361 1.23032 1.01613 0.96988 1.02118 1.18481 0.81213 0.80175 0.85573 1.91094 1.57816 1.68888 1.17717 1.55395 1.55482 1.39422 1.31260 1.06724 0.76706 0.75802 0.74278 1.93591 1.85246 1.52048 1.63651 1.93599 1.75741 1.82731 1.40530 1.30343 1.15404 1.14729 1.10460 1.18967 0.90571 0.95418 0.95751 1.20903 0.96233 0.98411 1.39879 0.92094 1.25007 0.98902 0.95175 0.95053 1.69946 1.28527 1.15132 1.39416 0.86572 0.81799 0.80730 0.78567 1.20091 1.21089 1.19775 1.21180 0.92914 0.91539 0.96770 0.85074 0.84979 0.85250 0.83638 0.83783 0.73671 0.85509 0.86114 0.94781 0.94698 0.92544 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -7.76 18.54 41.84 0.78 -6.99 16 2 C 0.23 3.87 15.32 -22.47 -0.34 3.52 16 3 C -0.02 -0.32 5.72 -107.00 -0.61 -0.93 16 4 C -0.06 -0.61 9.75 -39.07 -0.38 -0.99 16 5 C -0.13 -1.04 10.01 -39.71 -0.40 -1.44 16 6 C -0.07 -0.54 9.78 -39.03 -0.38 -0.92 16 7 C -0.08 -0.76 4.53 -105.11 -0.48 -1.24 16 8 C -0.01 -0.04 9.80 -37.15 -0.36 -0.40 16 9 C -0.22 -1.55 9.91 -37.51 -0.37 -1.93 16 10 C 0.56 6.78 6.53 -12.96 -0.08 6.69 16 11 O -0.48 -7.62 10.26 -11.94 -0.12 -7.74 16 12 N -1.06 -12.80 5.60 30.20 0.17 -12.63 16 13 S 2.56 46.90 5.11 -107.50 -0.55 46.35 16 14 O -0.95 -19.10 18.08 -57.54 -1.04 -20.14 16 15 O -0.94 -20.56 17.04 -64.79 -1.10 -21.66 16 16 C -0.57 -11.71 5.82 37.16 0.22 -11.50 16 17 C 0.03 0.86 4.98 -27.88 -0.14 0.72 16 18 C -0.51 -14.98 9.11 -34.44 -0.31 -15.29 16 19 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 20 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 22 Si 0.90 22.77 29.54 -169.99 -5.02 17.75 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.00 -0.04 6.30 -38.68 -0.24 -0.28 16 27 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 29 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 30 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 31 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 32 H 0.43 3.33 8.77 -34.47 -0.30 3.03 16 33 H 0.13 2.56 7.19 -51.93 -0.37 2.19 16 34 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16 35 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.12 1.45 7.04 -52.49 -0.37 1.08 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -40.65 355.55 -8.76 -49.40 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -3.97 Total: -0.71 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -3.99 Total: -22.27 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 1.68 Total: -46.34 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -2.27 Total: -49.55 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 16 Polarization: 46.90 SS G_CDS: -0.55 Total: 46.35 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -40.65 -8.76 -49.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492802437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.940 kcal (2) G-P(sol) polarization free energy of solvation -40.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds