Wall clock time and date at job start Tue Mar 31 2020 18:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39771 * 120.07038 * 64.36127 * 3 2 1 5 5 C 1.38084 * 120.19582 * 179.97438 * 4 3 2 6 6 C 1.38038 * 120.33066 * 0.02562 * 5 4 3 7 7 C 1.39897 * 120.13227 * 359.97438 * 6 5 4 8 8 C 1.47240 * 120.09733 * 180.02562 * 7 6 5 9 9 C 1.34795 * 119.99976 * 136.33896 * 8 7 6 10 10 C 1.46428 * 120.00093 * 349.02283 * 9 8 7 11 11 O 1.21698 * 120.00291 * 353.22789 * 10 9 8 12 12 N 1.34779 * 120.00002 * 172.95009 * 10 9 8 13 13 S 1.65604 * 119.99822 * 180.27988 * 12 10 9 14 14 O 1.42104 * 104.27212 * 181.06997 * 13 12 10 15 15 O 1.42096 * 104.27775 * 308.92564 * 13 12 10 16 16 C 1.81399 * 104.45053 * 64.99881 * 13 12 10 17 17 C 1.53002 * 109.46832 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.46968 * 179.97438 * 17 16 13 19 19 H 1.07995 * 119.99988 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99892 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00082 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99914 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47214 * 59.99534 * 22 20 18 24 24 H 1.48495 * 109.46768 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46800 * 299.99886 * 22 20 18 26 26 C 1.39302 * 120.06377 * 244.63375 * 3 2 1 27 27 H 1.08001 * 119.90667 * 359.97348 * 4 3 2 28 28 H 1.08000 * 119.83700 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.93195 * 180.02562 * 6 5 4 30 30 H 1.07994 * 119.99859 * 316.33391 * 8 7 6 31 31 H 1.07998 * 120.00056 * 169.02645 * 9 8 7 32 32 H 0.96998 * 120.00096 * 0.27406 * 12 10 9 33 33 H 1.08996 * 109.47062 * 299.99683 * 16 13 12 34 34 H 1.08994 * 109.47057 * 60.00056 * 16 13 12 35 35 H 1.08996 * 109.47175 * 299.99782 * 17 16 13 36 36 H 1.09002 * 109.47194 * 59.99957 * 17 16 13 37 37 H 0.96998 * 119.99708 * 180.02562 * 21 20 18 38 38 H 1.08000 * 120.16966 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2686 -0.5224 -1.0905 5 6 4.6495 -0.5226 -1.0935 6 6 5.3489 -0.0075 -0.0207 7 6 4.6617 0.5196 1.0780 8 6 5.4086 1.0694 2.2216 9 6 5.0220 2.2325 2.7826 10 6 4.0203 3.0686 2.1180 11 8 3.6275 2.7779 1.0035 12 7 3.5291 4.1571 2.7429 13 16 2.3911 5.0987 1.9941 14 8 2.1359 6.1443 2.9220 15 8 2.9490 5.3732 0.7164 16 6 0.9420 4.0189 1.8374 17 6 -0.1923 4.7839 1.1524 18 6 -1.3960 3.8866 1.0216 19 1 -1.3561 2.8724 1.3905 20 6 -2.5482 4.3606 0.4310 21 7 -2.5969 5.5959 -0.0178 22 14 -4.0405 3.2486 0.2695 23 1 -4.4819 2.8134 1.6188 24 1 -5.1413 3.9910 -0.3954 25 1 -3.6846 2.0575 -0.5430 26 6 3.2657 0.5174 1.0894 27 1 2.7285 -0.9277 -1.9333 28 1 5.1850 -0.9287 -1.9389 29 1 6.4289 -0.0105 -0.0300 30 1 6.2660 0.5408 2.6110 31 1 5.4511 2.5478 3.7221 32 1 3.8421 4.3888 3.6313 33 1 1.2031 3.1447 1.2410 34 1 0.6180 3.6995 2.8279 35 1 -0.4533 5.6578 1.7491 36 1 0.1314 5.1037 0.1619 37 1 -3.4076 5.9294 -0.4330 38 1 2.7293 0.9184 1.9367 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492802437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:06 Heat of formation + Delta-G solvation = -59.233274 kcal Electronic energy + Delta-G solvation = -26196.907741 eV Core-core repulsion = 22324.398053 eV Total energy + Delta-G solvation = -3872.509689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.52956 -39.96773 -38.32681 -37.54958 -37.25618 -36.03384 -35.57747 -34.91557 -33.25306 -32.23407 -30.74149 -27.72940 -25.79004 -24.79910 -23.79622 -23.30328 -21.19486 -20.68641 -19.91039 -19.28301 -18.42611 -17.98251 -17.42487 -17.22460 -16.75911 -16.66001 -16.44718 -15.97273 -15.86478 -15.28918 -15.14801 -14.81406 -14.75136 -14.57671 -14.09477 -13.91345 -13.87256 -13.71286 -13.63808 -13.39977 -13.28794 -13.15204 -13.05762 -12.94154 -12.44787 -12.38636 -12.31656 -12.13946 -11.98542 -11.79885 -11.35030 -11.13738 -10.84197 -10.73236 -9.77106 -9.21500 -8.35781 -6.47857 -1.03526 -0.36368 -0.02123 0.80664 1.27339 1.32065 1.40208 1.43413 1.63504 1.88033 2.10266 2.28174 2.54817 2.89803 2.97460 3.02811 3.04865 3.43721 3.75416 3.86104 3.93203 3.96597 4.08995 4.20690 4.30316 4.51647 4.59766 4.67197 4.78751 5.01340 5.09955 5.13645 5.15806 5.21363 5.44469 5.46953 5.53890 5.58514 5.85250 5.96397 5.97718 6.48016 6.56292 6.62907 7.21479 8.76412 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.005020 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.648711 B = 5576.386737 C = 7759.234598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.262 3.738 3 C -0.064 4.064 4 C -0.068 4.068 5 C -0.126 4.126 6 C -0.057 4.057 7 C -0.095 4.095 8 C 0.016 3.984 9 C -0.219 4.219 10 C 0.544 3.456 11 O -0.523 6.523 12 N -1.034 6.034 13 S 2.605 3.395 14 O -0.972 6.972 15 O -0.975 6.975 16 C -0.582 4.582 17 C 0.028 3.972 18 C -0.534 4.534 19 H 0.060 0.940 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.960 3.040 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.279 1.279 26 C -0.017 4.017 27 H 0.137 0.863 28 H 0.166 0.834 29 H 0.172 0.828 30 H 0.201 0.799 31 H 0.191 0.809 32 H 0.451 0.549 33 H 0.123 0.877 34 H 0.146 0.854 35 H 0.018 0.982 36 H 0.003 0.997 37 H 0.269 0.731 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.625 -14.962 7.561 30.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.052 4.052 3 C -0.068 4.068 4 C -0.088 4.088 5 C -0.144 4.144 6 C -0.075 4.075 7 C -0.095 4.095 8 C -0.003 4.003 9 C -0.241 4.241 10 C 0.337 3.663 11 O -0.399 6.399 12 N -0.801 5.801 13 S 2.703 3.297 14 O -0.963 6.963 15 O -0.965 6.965 16 C -0.714 4.714 17 C -0.011 4.011 18 C -0.573 4.573 19 H 0.078 0.922 20 C -0.192 4.192 21 N -0.567 5.567 22 Si 0.784 3.216 23 H -0.185 1.185 24 H -0.196 1.196 25 H -0.205 1.205 26 C -0.038 4.038 27 H 0.155 0.845 28 H 0.183 0.817 29 H 0.190 0.810 30 H 0.217 0.783 31 H 0.208 0.792 32 H 0.291 0.709 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.036 0.964 36 H 0.022 0.978 37 H 0.078 0.922 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 23.625 -14.111 6.430 28.260 hybrid contribution -1.455 -0.218 0.081 1.474 sum 22.170 -14.329 6.511 27.188 Atomic orbital electron populations 1.81359 1.13980 1.10461 1.08844 1.26444 0.93489 0.92510 0.92755 1.16072 0.82658 1.08658 0.99397 1.21474 0.95826 0.95918 0.95590 1.21343 0.92355 1.00506 1.00183 1.21905 1.01961 0.92502 0.91114 1.19166 0.91571 1.01222 0.97580 1.22982 0.95433 0.92770 0.89120 1.23207 1.00294 0.96814 1.03796 1.19571 0.81486 0.79913 0.85349 1.91101 1.59380 1.69510 1.19885 1.54799 1.53826 1.39150 1.32362 1.05155 0.76117 0.75025 0.73421 1.93560 1.85803 1.53097 1.63809 1.93547 1.76222 1.83465 1.43241 1.30263 1.15536 1.14624 1.11007 1.18756 0.92400 0.95365 0.94554 1.21289 0.97514 0.98697 1.39798 0.92190 1.25906 1.02049 0.96593 0.94648 1.70055 1.29581 1.16798 1.40222 0.85576 0.78421 0.78459 0.79137 1.18501 1.19628 1.20472 1.21264 0.94540 0.91870 0.96147 0.84479 0.81676 0.81015 0.78258 0.79170 0.70851 0.85822 0.83629 0.96362 0.97842 0.92167 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.25 18.54 19.01 0.35 -19.90 16 2 C 0.26 9.31 15.32 88.33 1.35 10.67 16 3 C -0.06 -1.71 5.72 -21.41 -0.12 -1.83 16 4 C -0.07 -1.33 9.75 22.60 0.22 -1.11 16 5 C -0.13 -1.61 10.01 22.19 0.22 -1.39 16 6 C -0.06 -0.61 9.78 22.62 0.22 -0.38 16 7 C -0.10 -1.41 4.53 -20.18 -0.09 -1.51 16 8 C 0.02 0.11 9.80 23.85 0.23 0.34 16 9 C -0.22 -2.09 9.91 23.61 0.23 -1.86 16 10 C 0.54 12.07 6.53 86.38 0.56 12.64 16 11 O -0.52 -16.23 10.26 12.03 0.12 -16.11 16 12 N -1.03 -23.22 5.60 -176.57 -0.99 -24.21 16 13 S 2.61 96.33 5.11 -56.49 -0.29 96.04 16 14 O -0.97 -38.89 18.08 -127.65 -2.31 -41.20 16 15 O -0.97 -43.93 17.04 -120.72 -2.06 -45.98 16 16 C -0.58 -24.74 5.82 71.98 0.42 -24.32 16 17 C 0.03 1.59 4.98 29.85 0.15 1.74 16 18 C -0.53 -32.51 9.11 25.60 0.23 -32.28 16 19 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 20 C 0.01 0.44 5.46 84.66 0.46 0.90 16 21 N -0.93 -59.18 13.29 21.45 0.28 -58.90 16 22 Si 0.96 48.14 29.54 68.60 2.03 50.17 16 23 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 26 C -0.02 -0.40 6.30 22.86 0.14 -0.25 16 27 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 28 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 29 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 30 H 0.20 -0.66 8.06 -2.91 -0.02 -0.68 16 31 H 0.19 0.05 8.06 -2.91 -0.02 0.03 16 32 H 0.45 5.64 8.77 -96.75 -0.85 4.79 16 33 H 0.12 5.32 7.19 -2.39 -0.02 5.30 16 34 H 0.15 5.27 8.14 -2.39 -0.02 5.25 16 35 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 38 H 0.11 2.71 7.04 -2.91 -0.02 2.69 16 Total: -1.00 -96.60 355.55 1.65 -94.94 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 0.27 Total: 3.81 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 4.24 Total: -38.65 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -0.35 Total: -103.01 kcal Atomic # 8 Polarization: -99.05 SS G_CDS: -4.24 Total: -103.29 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Atomic # 16 Polarization: 96.33 SS G_CDS: -0.29 Total: 96.04 kcal Total: -96.60 1.65 -94.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492802437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.708 kcal (2) G-P(sol) polarization free energy of solvation -96.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds