Wall clock time and date at job start Tue Mar 31 2020 18:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86806 * 120.00291 * 2 1 4 4 H 1.48497 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46785 * 299.99848 * 3 2 1 6 6 H 1.48498 * 109.47144 * 59.99938 * 3 2 1 7 7 C 1.40160 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99960 * 197.93390 * 7 2 1 9 9 C 1.40958 * 119.99849 * 17.93547 * 7 2 1 10 10 C 1.40966 * 120.09934 * 24.70170 * 9 7 2 11 11 C 1.36200 * 119.89702 * 179.97438 * 10 9 7 12 12 C 1.40136 * 120.10448 * 359.97438 * 11 10 9 13 13 C 1.47419 * 119.90376 * 179.72460 * 12 11 10 14 14 N 1.32312 * 126.69585 * 179.71207 * 13 12 11 15 15 C 1.34086 * 105.54505 * 179.91425 * 14 13 12 16 16 C 1.50702 * 126.16439 * 180.10396 * 15 14 13 17 17 H 1.09005 * 110.01306 * 358.88987 * 16 15 14 18 18 C 1.53871 * 110.02602 * 120.27095 * 16 15 14 19 19 C 1.54171 * 108.70301 * 166.47279 * 18 16 15 20 20 S 1.82922 * 105.08585 * 332.08834 * 19 18 16 21 21 O 1.42091 * 109.35019 * 115.52472 * 20 19 18 22 22 O 1.42096 * 109.35467 * 248.72992 * 20 19 18 23 23 C 1.55050 * 110.02549 * 237.46096 * 16 15 14 24 24 N 1.30109 * 107.66987 * 0.35536 * 15 14 13 25 25 O 1.21292 * 110.51303 * 359.77423 * 24 15 14 26 26 C 1.40138 * 120.19469 * 0.02562 * 12 11 10 27 27 C 1.36206 * 120.10408 * 359.97438 * 26 12 11 28 28 H 0.97006 * 119.99245 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.04804 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.94961 * 180.02562 * 11 10 9 31 31 H 1.09004 * 109.64776 * 286.31893 * 18 16 15 32 32 H 1.08997 * 109.64909 * 46.75255 * 18 16 15 33 33 H 1.08996 * 110.31764 * 90.99295 * 19 18 16 34 34 H 1.08999 * 110.31463 * 213.08973 * 19 18 16 35 35 H 1.08996 * 110.79392 * 316.54699 * 23 16 15 36 36 H 1.09000 * 110.78880 * 80.01285 * 23 16 15 37 37 H 1.08004 * 119.94617 * 179.97438 * 26 12 11 38 38 H 1.07994 * 120.05198 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7010 1.3463 0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8824 2.3965 1.2125 7 6 2.0077 -1.2139 0.0005 8 1 3.0484 -1.2365 0.2886 9 6 1.3542 -2.4050 -0.3748 10 6 0.2262 -2.3568 -1.2189 11 6 -0.4018 -3.5103 -1.5794 12 6 0.0721 -4.7439 -1.1132 13 6 -0.6146 -5.9893 -1.5013 14 7 -0.2817 -7.2196 -1.1459 15 6 -1.1852 -8.0194 -1.7305 16 6 -1.2399 -9.5221 -1.6297 17 1 -0.4143 -9.8852 -1.0176 18 6 -2.5821 -9.9606 -1.0182 19 6 -2.7539 -11.4768 -1.2387 20 16 -1.8054 -11.8474 -2.7583 21 8 -0.7214 -12.7086 -2.4384 22 8 -2.7049 -12.1958 -3.8017 23 6 -1.1703 -10.1520 -3.0448 24 7 -2.0029 -7.2649 -2.4049 25 8 -1.6968 -6.0969 -2.2894 26 6 1.1931 -4.7967 -0.2739 27 6 1.8274 -3.6482 0.0918 28 1 -0.4849 0.8402 -0.0004 29 1 -0.1395 -1.4065 -1.5790 30 1 -1.2658 -3.4743 -2.2264 31 1 -2.5867 -9.7429 0.0499 32 1 -3.3984 -9.4267 -1.5046 33 1 -2.3460 -12.0308 -0.3933 34 1 -3.8067 -11.7219 -1.3787 35 1 -1.8113 -9.6113 -3.7410 36 1 -0.1422 -10.1800 -3.4056 37 1 1.5547 -5.7496 0.0835 38 1 2.6915 -3.6899 0.7383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546984752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:15 Heat of formation + Delta-G solvation = 8.728228 kcal Electronic energy + Delta-G solvation = -24930.061346 eV Core-core repulsion = 21060.498689 eV Total energy + Delta-G solvation = -3869.562657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -44.81477 -37.91566 -37.60418 -37.30155 -36.29616 -34.84940 -34.19290 -32.14105 -30.42883 -29.81541 -29.55068 -26.17879 -26.12336 -23.51280 -23.19020 -21.53977 -21.02686 -19.83966 -19.15953 -17.75333 -17.56623 -17.39643 -17.06817 -16.45910 -15.98483 -15.75270 -15.21375 -14.84668 -14.48604 -14.29922 -14.18055 -13.65880 -13.01947 -12.90961 -12.67974 -12.57166 -12.43385 -12.37265 -12.31469 -12.17899 -12.06324 -11.72357 -11.40213 -11.39877 -11.24663 -11.11019 -11.02960 -10.90358 -10.60367 -10.44735 -10.11253 -9.84212 -9.74570 -9.36417 -7.93797 -7.64188 -7.26151 -4.80206 -0.30030 1.33558 2.10477 2.33011 2.72133 2.83555 2.86468 2.89436 3.17853 3.29025 3.47944 3.58357 3.61167 3.79722 4.01372 4.23473 4.28662 4.32365 4.46695 4.58129 4.75983 5.12369 5.20471 5.30831 5.32318 5.54096 5.57797 5.81352 6.01231 6.06478 6.32016 6.51458 6.58347 6.64401 6.81692 6.93579 7.22854 7.46246 7.63396 7.67468 7.82573 8.17018 8.38539 8.50448 8.74937 9.63807 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.043377 B = 0.002042 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.355459 B =13706.651708 C =13940.993089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.421 4.421 8 H 0.091 0.909 9 C 0.128 3.872 10 C -0.175 4.175 11 C -0.051 4.051 12 C -0.203 4.203 13 C 0.286 3.714 14 N -0.527 5.527 15 C 0.180 3.820 16 C 0.010 3.990 17 H 0.122 0.878 18 C -0.109 4.109 19 C -0.588 4.588 20 S 2.394 3.606 21 O -0.934 6.934 22 O -0.936 6.936 23 C -0.583 4.583 24 N -0.411 5.411 25 O 0.052 5.948 26 C -0.017 4.017 27 C -0.233 4.233 28 H 0.291 0.709 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.105 0.895 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -11.136 -1.063 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.153 4.153 3 Si 0.740 3.260 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.448 4.448 8 H 0.109 0.891 9 C 0.124 3.876 10 C -0.194 4.194 11 C -0.071 4.071 12 C -0.209 4.209 13 C 0.078 3.922 14 N -0.262 5.262 15 C -0.095 4.095 16 C -0.011 4.011 17 H 0.140 0.860 18 C -0.148 4.148 19 C -0.718 4.718 20 S 2.577 3.423 21 O -0.931 6.931 22 O -0.933 6.933 23 C -0.713 4.713 24 N -0.128 5.128 25 O -0.001 6.001 26 C -0.037 4.037 27 C -0.253 4.253 28 H 0.102 0.898 29 H 0.142 0.858 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.124 0.876 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.134 -12.484 -1.823 13.277 hybrid contribution 0.146 1.709 0.518 1.792 sum -3.988 -10.776 -1.304 11.564 Atomic orbital electron populations 1.69762 1.08046 1.30615 1.29496 1.26211 0.94914 1.02333 0.91856 0.86089 0.81100 0.79687 0.79127 1.17843 1.19131 1.19442 1.20006 0.98593 0.91130 1.35095 0.89139 1.17868 0.90364 0.92300 0.87109 1.20965 0.99708 0.96950 1.01817 1.20473 0.97629 0.91633 0.97368 1.16637 1.03411 0.85433 1.15410 1.26694 0.84222 0.94669 0.86615 1.72124 1.26756 0.99239 1.28072 1.24690 0.91058 0.97710 0.96029 1.19976 1.00293 0.86887 0.93911 0.85968 1.21978 0.96854 0.91305 1.04698 1.30485 1.15441 1.04703 1.21174 1.08937 0.76959 0.78179 0.78230 1.93633 1.52946 1.62029 1.84463 1.93622 1.64402 1.81913 1.53372 1.30823 1.14061 1.22485 1.03964 1.74398 1.24238 0.89831 1.24357 1.85331 1.39581 1.21326 1.53867 1.20308 0.92380 0.97598 0.93368 1.20690 1.04618 0.92307 1.07702 0.89764 0.85773 0.88178 0.88207 0.88851 0.84124 0.83974 0.83730 0.83798 0.87646 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.74 10.96 55.56 0.61 -16.13 16 2 C 0.07 1.50 5.13 -17.31 -0.09 1.41 16 3 Si 0.92 15.79 29.60 -169.99 -5.03 10.76 16 4 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 5 H -0.27 -4.55 7.11 56.52 0.40 -4.15 16 6 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 7 C -0.42 -9.52 9.03 -37.83 -0.34 -9.86 16 8 H 0.09 1.93 7.91 -52.49 -0.42 1.52 16 9 C 0.13 2.96 5.57 -106.80 -0.60 2.37 16 10 C -0.17 -3.99 8.63 -39.28 -0.34 -4.33 16 11 C -0.05 -1.08 9.66 -39.60 -0.38 -1.46 16 12 C -0.20 -4.30 5.89 -104.73 -0.62 -4.92 16 13 C 0.29 5.71 7.99 -13.93 -0.11 5.60 16 14 N -0.53 -9.93 11.24 -10.16 -0.11 -10.05 16 15 C 0.18 2.90 6.76 -156.60 -1.06 1.84 16 16 C 0.01 0.12 3.10 -90.23 -0.28 -0.16 16 17 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 18 C -0.11 -0.93 5.74 -25.67 -0.15 -1.08 16 19 C -0.59 -3.64 7.26 37.77 0.27 -3.37 16 20 S 2.39 20.96 6.11 -107.50 -0.66 20.31 16 21 O -0.93 -11.05 18.14 -57.71 -1.05 -12.09 16 22 O -0.94 -11.34 18.14 -57.71 -1.05 -12.39 16 23 C -0.58 -5.49 6.66 38.24 0.25 -5.24 16 24 N -0.41 -7.19 12.01 31.25 0.38 -6.82 16 25 O 0.05 1.00 11.12 16.38 0.18 1.18 16 26 C -0.02 -0.35 9.63 -39.60 -0.38 -0.73 16 27 C -0.23 -5.05 9.73 -39.28 -0.38 -5.44 16 28 H 0.29 5.73 8.29 -40.82 -0.34 5.39 16 29 H 0.12 2.87 6.16 -52.49 -0.32 2.55 16 30 H 0.10 1.94 7.93 -52.49 -0.42 1.52 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 33 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.14 1.40 8.01 -51.93 -0.42 0.98 16 36 H 0.14 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.11 2.05 7.86 -52.48 -0.41 1.64 16 38 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -29.90 342.40 -9.84 -39.74 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.07 Total: 5.70 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -4.20 Total: -25.37 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.87 Total: -32.99 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.91 Total: -23.30 kcal Atomic # 14 Polarization: 15.79 SS G_CDS: -5.03 Total: 10.76 kcal Atomic # 16 Polarization: 20.96 SS G_CDS: -0.66 Total: 20.31 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.90 -9.84 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546984752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.471 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds