Wall clock time and date at job start Tue Mar 31 2020 17:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46964 * 84.99935 * 3 2 1 5 5 H 1.08004 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99968 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00006 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 90.00088 * 8 6 4 10 10 H 1.48501 * 109.47108 * 210.00195 * 8 6 4 11 11 H 1.48502 * 109.46839 * 329.99886 * 8 6 4 12 12 S 1.65597 * 119.99791 * 180.28225 * 2 1 3 13 13 O 1.42101 * 106.40154 * 203.53789 * 12 2 1 14 14 O 1.42106 * 106.40098 * 336.45446 * 12 2 1 15 15 N 1.65596 * 107.22389 * 89.99756 * 12 2 1 16 16 C 1.46498 * 119.99862 * 64.99463 * 15 12 2 17 17 H 1.09002 * 109.47391 * 335.00516 * 16 15 12 18 18 C 1.50696 * 109.47138 * 95.00595 * 16 15 12 19 19 O 1.20828 * 119.99831 * 359.97438 * 18 16 15 20 20 O 1.34228 * 120.00323 * 180.02562 * 18 16 15 21 21 C 1.50701 * 109.47180 * 215.00440 * 16 15 12 22 22 C 1.33390 * 125.20143 * 140.00274 * 21 16 15 23 23 C 1.38426 * 114.91940 * 179.97438 * 22 21 16 24 24 C 1.33385 * 114.92246 * 359.97438 * 23 22 21 25 25 S 1.75887 * 109.59469 * 359.76163 * 24 23 22 26 26 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 27 27 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 28 28 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 29 29 H 1.08990 * 109.47572 * 205.00129 * 3 2 1 30 30 H 1.09003 * 109.47280 * 325.00485 * 3 2 1 31 31 H 0.97000 * 120.00049 * 180.02562 * 7 6 4 32 32 H 0.97000 * 119.99918 * 245.00321 * 15 12 2 33 33 H 0.96700 * 117.00142 * 180.02562 * 20 18 16 34 34 H 1.07996 * 122.54291 * 0.02562 * 22 21 16 35 35 H 1.07999 * 122.53864 * 180.02562 * 23 22 21 36 36 H 1.08001 * 125.20776 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 1 1.9289 1.1933 2.2332 6 6 2.9998 2.9507 1.6664 7 7 3.1259 3.3841 2.9017 8 14 3.7128 3.9409 0.2519 9 1 2.6934 4.9001 -0.2441 10 1 4.9072 4.6872 0.7227 11 1 4.1045 3.0223 -0.8472 12 16 2.2930 -1.4341 -0.0071 13 8 3.5760 -1.1595 0.5387 14 8 1.4113 -2.4091 0.5327 15 7 2.5381 -1.8510 -1.5908 16 6 3.3862 -1.0162 -2.4452 17 1 3.4018 0.0025 -2.0575 18 6 4.7874 -1.5705 -2.4573 19 8 5.0507 -2.5611 -1.8175 20 8 5.7432 -0.9633 -3.1780 21 6 2.8358 -1.0113 -3.8481 22 6 2.7827 0.0537 -4.6496 23 6 2.2342 -0.1828 -5.8983 24 6 1.8424 -1.4399 -6.1111 25 16 2.1732 -2.4108 -4.6823 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5181 29 1 3.1858 1.1177 -0.4343 30 1 1.6502 2.0043 -0.5894 31 1 3.5887 4.2181 3.0782 32 1 2.1200 -2.6479 -1.9529 33 1 6.6266 -1.3560 -3.1549 34 1 3.1413 1.0266 -4.3474 35 1 2.1320 0.5916 -6.6441 36 1 1.3939 -1.8065 -7.0227 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547545861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:26 Heat of formation + Delta-G solvation = -112.527372 kcal Electronic energy + Delta-G solvation = -25503.577281 eV Core-core repulsion = 21628.367444 eV Total energy + Delta-G solvation = -3875.209837 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43537 -38.17358 -36.81882 -36.32581 -35.78623 -35.29886 -35.21975 -32.44273 -30.40501 -28.49117 -27.00463 -25.27247 -23.94658 -22.05534 -21.74825 -20.22547 -18.80540 -18.57761 -17.78386 -17.36995 -17.26379 -16.87321 -16.32799 -15.82604 -15.75448 -15.29509 -14.86219 -14.31308 -13.75482 -13.58293 -13.31000 -13.10364 -12.99487 -12.83178 -12.69036 -12.48210 -12.29615 -11.85906 -11.75050 -11.55428 -11.50429 -11.39451 -11.37059 -11.06350 -11.01404 -10.66852 -10.61842 -10.29794 -9.91896 -9.61016 -9.02170 -8.74379 -8.64764 -8.24410 -6.12735 -4.12854 0.61037 0.90482 1.27580 1.67948 2.10310 2.44868 2.81713 3.20686 3.25590 3.28069 3.35709 3.92577 4.22583 4.32440 4.67147 4.74466 4.79922 5.05804 5.11626 5.15311 5.31548 5.38547 5.52382 5.81646 5.94056 5.95585 6.14882 6.17004 6.34624 6.41692 6.52461 6.73087 6.93152 7.26317 7.49911 7.81766 8.43374 8.92651 9.45101 11.00794 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.005219 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.017776 B = 5363.499866 C = 5862.839208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.990 5.990 3 C 0.225 3.775 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.074 3.926 7 N -0.892 5.892 8 Si 0.871 3.129 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.265 1.265 12 S 2.778 3.222 13 O -0.947 6.947 14 O -0.979 6.979 15 N -1.111 6.111 16 C 0.245 3.755 17 H 0.141 0.859 18 C 0.469 3.531 19 O -0.487 6.487 20 O -0.509 6.509 21 C -0.195 4.195 22 C -0.101 4.101 23 C -0.133 4.133 24 C -0.205 4.205 25 S 0.116 5.884 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.028 0.972 30 H 0.033 0.967 31 H 0.266 0.734 32 H 0.415 0.585 33 H 0.411 0.589 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 -7.663 -21.085 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.833 5.833 3 C 0.102 3.898 4 C -0.571 4.571 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.698 3.302 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.189 1.189 12 S 2.785 3.215 13 O -0.930 6.930 14 O -0.963 6.963 15 N -0.868 5.868 16 C 0.133 3.867 17 H 0.159 0.841 18 C 0.306 3.694 19 O -0.372 6.372 20 O -0.320 6.320 21 C -0.314 4.314 22 C -0.133 4.133 23 C -0.163 4.163 24 C -0.341 4.341 25 S 0.380 5.620 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.249 0.751 33 H 0.270 0.730 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.086 -9.484 -19.566 21.843 hybrid contribution 0.923 1.753 -1.431 2.444 sum -1.163 -7.731 -20.997 22.405 Atomic orbital electron populations 1.21280 0.79074 1.01447 1.02134 1.57474 1.14836 1.22444 1.88527 1.19544 0.90490 0.80762 0.99053 1.21324 1.37015 1.07111 0.91687 0.90271 1.24880 0.95310 0.97185 0.95560 1.69890 1.42340 1.21892 1.18870 0.86934 0.79455 0.80772 0.83042 1.19907 1.20745 1.18937 1.02305 0.73934 0.72807 0.72432 1.93668 1.40185 1.84439 1.74721 1.93579 1.66937 1.60211 1.75607 1.56477 1.60490 1.37220 1.32564 1.18306 0.83947 0.96694 0.87797 0.84143 1.23653 0.87953 0.81976 0.75782 1.90736 1.81970 1.24982 1.39548 1.84499 1.23151 1.58124 1.66225 1.24070 1.10505 0.98179 0.98656 1.20219 1.00209 0.99567 0.93293 1.20176 1.01511 0.96952 0.97703 1.25722 1.08514 0.97494 1.02321 1.84319 1.59462 1.11492 1.06768 0.92478 0.91216 0.92549 0.95441 0.94891 0.92432 0.75125 0.72965 0.83255 0.83707 0.81553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.72 10.33 59.85 0.62 2.34 16 2 N -0.99 -19.33 3.23 -123.05 -0.40 -19.73 16 3 C 0.22 5.01 3.89 -5.19 -0.02 4.99 16 4 C -0.53 -14.80 9.94 -34.44 -0.34 -15.15 16 5 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 8 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 12 S 2.78 54.97 5.96 -107.50 -0.64 54.33 16 13 O -0.95 -22.70 16.87 -57.17 -0.96 -23.67 16 14 O -0.98 -20.55 17.21 -57.17 -0.98 -21.53 16 15 N -1.11 -16.96 5.01 -6.88 -0.03 -16.99 16 16 C 0.25 3.50 3.13 -70.24 -0.22 3.28 16 17 H 0.14 2.03 6.18 -51.93 -0.32 1.71 16 18 C 0.47 7.07 7.68 36.00 0.28 7.34 16 19 O -0.49 -8.72 17.19 -18.75 -0.32 -9.04 16 20 O -0.51 -5.93 13.34 -39.25 -0.52 -6.46 16 21 C -0.20 -2.26 5.37 -36.00 -0.19 -2.45 16 22 C -0.10 -1.02 10.04 -41.21 -0.41 -1.43 16 23 C -0.13 -1.10 10.18 -41.21 -0.42 -1.52 16 24 C -0.20 -1.63 11.23 29.04 0.33 -1.30 16 25 S 0.12 1.14 22.40 -107.50 -2.41 -1.27 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 28 H 0.06 0.75 7.79 -51.93 -0.40 0.35 16 29 H 0.03 0.61 5.24 -51.93 -0.27 0.34 16 30 H 0.03 0.67 7.39 -51.93 -0.38 0.29 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.42 5.41 7.97 -34.47 -0.27 5.14 16 33 H 0.41 2.99 9.10 45.56 0.41 3.41 16 34 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -37.14 340.92 -8.45 -45.60 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -2.93 Total: 6.20 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.49 Total: -1.91 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: 0.34 Total: -62.97 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -2.79 Total: -60.69 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Atomic # 16 Polarization: 56.11 SS G_CDS: -3.05 Total: 53.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.14 -8.45 -45.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547545861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.932 kcal (2) G-P(sol) polarization free energy of solvation -37.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds