Wall clock time and date at job start Tue Mar 31 2020 17:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46964 * 84.99935 * 3 2 1 5 5 H 1.08004 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99968 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00006 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 90.00088 * 8 6 4 10 10 H 1.48501 * 109.47108 * 210.00195 * 8 6 4 11 11 H 1.48502 * 109.46839 * 329.99886 * 8 6 4 12 12 S 1.65597 * 119.99791 * 180.28225 * 2 1 3 13 13 O 1.42101 * 106.40154 * 203.53789 * 12 2 1 14 14 O 1.42106 * 106.40098 * 336.45446 * 12 2 1 15 15 N 1.65596 * 107.22389 * 89.99756 * 12 2 1 16 16 C 1.46498 * 119.99862 * 64.99463 * 15 12 2 17 17 H 1.09002 * 109.47391 * 335.00516 * 16 15 12 18 18 C 1.50696 * 109.47138 * 95.00595 * 16 15 12 19 19 O 1.20828 * 119.99831 * 359.97438 * 18 16 15 20 20 O 1.34228 * 120.00323 * 180.02562 * 18 16 15 21 21 C 1.50701 * 109.47180 * 215.00440 * 16 15 12 22 22 C 1.33390 * 125.20143 * 140.00274 * 21 16 15 23 23 C 1.38426 * 114.91940 * 179.97438 * 22 21 16 24 24 C 1.33385 * 114.92246 * 359.97438 * 23 22 21 25 25 S 1.75887 * 109.59469 * 359.76163 * 24 23 22 26 26 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 27 27 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 28 28 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 29 29 H 1.08990 * 109.47572 * 205.00129 * 3 2 1 30 30 H 1.09003 * 109.47280 * 325.00485 * 3 2 1 31 31 H 0.97000 * 120.00049 * 180.02562 * 7 6 4 32 32 H 0.97000 * 119.99918 * 245.00321 * 15 12 2 33 33 H 0.96700 * 117.00142 * 180.02562 * 20 18 16 34 34 H 1.07996 * 122.54291 * 0.02562 * 22 21 16 35 35 H 1.07999 * 122.53864 * 180.02562 * 23 22 21 36 36 H 1.08001 * 125.20776 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 1 1.9289 1.1933 2.2332 6 6 2.9998 2.9507 1.6664 7 7 3.1259 3.3841 2.9017 8 14 3.7128 3.9409 0.2519 9 1 2.6934 4.9001 -0.2441 10 1 4.9072 4.6872 0.7227 11 1 4.1045 3.0223 -0.8472 12 16 2.2930 -1.4341 -0.0071 13 8 3.5760 -1.1595 0.5387 14 8 1.4113 -2.4091 0.5327 15 7 2.5381 -1.8510 -1.5908 16 6 3.3862 -1.0162 -2.4452 17 1 3.4018 0.0025 -2.0575 18 6 4.7874 -1.5705 -2.4573 19 8 5.0507 -2.5611 -1.8175 20 8 5.7432 -0.9633 -3.1780 21 6 2.8358 -1.0113 -3.8481 22 6 2.7827 0.0537 -4.6496 23 6 2.2342 -0.1828 -5.8983 24 6 1.8424 -1.4399 -6.1111 25 16 2.1732 -2.4108 -4.6823 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5181 29 1 3.1858 1.1177 -0.4343 30 1 1.6502 2.0043 -0.5894 31 1 3.5887 4.2181 3.0782 32 1 2.1200 -2.6479 -1.9529 33 1 6.6266 -1.3560 -3.1549 34 1 3.1413 1.0266 -4.3474 35 1 2.1320 0.5916 -6.6441 36 1 1.3939 -1.8065 -7.0227 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547545861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:25 Heat of formation + Delta-G solvation = -143.703075 kcal Electronic energy + Delta-G solvation = -25504.929161 eV Core-core repulsion = 21628.367444 eV Total energy + Delta-G solvation = -3876.561717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.54173 -38.93524 -38.46029 -37.41948 -37.37085 -36.99789 -36.35581 -34.50751 -31.33072 -30.30457 -27.93582 -26.86377 -24.70362 -23.90190 -22.81664 -21.28956 -19.95060 -19.57157 -19.23494 -18.79947 -18.71787 -18.30175 -17.81560 -17.11390 -16.78907 -16.50351 -16.16600 -15.74407 -15.37456 -14.69778 -14.54139 -14.44798 -14.30575 -14.12671 -13.82286 -13.54191 -13.44647 -13.30475 -13.15247 -13.13481 -13.05625 -12.96942 -12.62839 -12.36195 -12.33693 -12.17825 -12.00485 -11.70744 -11.69139 -11.13604 -10.75005 -9.90340 -9.72875 -9.43629 -8.26752 -6.33871 -0.64856 -0.06819 0.54889 0.97451 1.04120 1.38660 1.44391 1.52457 1.67446 1.74227 2.09007 2.38150 2.49249 3.06063 3.22354 3.25585 3.59156 3.87995 4.04987 4.23947 4.27330 4.61528 4.62080 4.73518 4.74489 4.79992 5.04924 5.16734 5.27060 5.31793 5.44991 5.47898 5.51681 5.54527 5.76996 6.30541 6.69685 6.83381 7.29126 8.91002 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.005219 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.017776 B = 5363.499866 C = 5862.839208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.993 5.993 3 C 0.230 3.770 4 C -0.545 4.545 5 H 0.025 0.975 6 C 0.005 3.995 7 N -0.950 5.950 8 Si 0.942 3.058 9 H -0.249 1.249 10 H -0.288 1.288 11 H -0.229 1.229 12 S 2.793 3.207 13 O -0.996 6.996 14 O -0.999 6.999 15 N -1.096 6.096 16 C 0.240 3.760 17 H 0.140 0.860 18 C 0.468 3.532 19 O -0.526 6.526 20 O -0.497 6.497 21 C -0.222 4.222 22 C -0.092 4.092 23 C -0.140 4.140 24 C -0.187 4.187 25 S 0.096 5.904 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.267 0.733 32 H 0.426 0.574 33 H 0.430 0.570 34 H 0.160 0.840 35 H 0.173 0.827 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.388 -6.697 -25.628 26.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.835 5.835 3 C 0.105 3.895 4 C -0.584 4.584 5 H 0.043 0.957 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.763 3.237 9 H -0.174 1.174 10 H -0.214 1.214 11 H -0.152 1.152 12 S 2.801 3.199 13 O -0.979 6.979 14 O -0.983 6.983 15 N -0.856 5.856 16 C 0.128 3.872 17 H 0.157 0.843 18 C 0.308 3.692 19 O -0.415 6.415 20 O -0.310 6.310 21 C -0.340 4.340 22 C -0.124 4.124 23 C -0.169 4.169 24 C -0.323 4.323 25 S 0.359 5.641 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.262 0.738 33 H 0.292 0.708 34 H 0.178 0.822 35 H 0.190 0.810 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -2.496 -8.546 -24.137 25.727 hybrid contribution 1.016 1.386 -0.042 1.719 sum -1.480 -7.161 -24.178 25.260 Atomic orbital electron populations 1.21560 0.77108 1.04275 1.01892 1.57339 1.16152 1.21214 1.88837 1.19420 0.91905 0.82320 0.95811 1.21663 1.36553 1.06855 0.93363 0.95709 1.26006 0.95666 0.98660 0.98940 1.70087 1.44029 1.22818 1.22082 0.85810 0.78701 0.79510 0.79683 1.17354 1.21374 1.15201 1.01527 0.72824 0.72535 0.73016 1.93604 1.42597 1.85106 1.76604 1.93539 1.67130 1.60786 1.76841 1.55901 1.60748 1.37827 1.31162 1.18421 0.83522 0.95992 0.89289 0.84253 1.23895 0.88788 0.81426 0.75134 1.90724 1.82698 1.26786 1.41300 1.84448 1.23978 1.57536 1.65030 1.23805 1.13040 0.99550 0.97607 1.20520 0.98838 0.99477 0.93575 1.20445 1.01179 0.97750 0.97546 1.26110 1.07170 0.96938 1.02089 1.84421 1.59743 1.11766 1.08120 0.94359 0.88562 0.89572 0.94589 0.91445 0.92390 0.73794 0.70777 0.82202 0.80986 0.78770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.99 10.33 127.77 1.32 4.31 16 2 N -0.99 -38.13 3.23 -543.22 -1.75 -39.88 16 3 C 0.23 9.92 3.89 85.63 0.33 10.25 16 4 C -0.55 -31.03 9.94 25.60 0.25 -30.77 16 5 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 6 C 0.00 0.28 5.47 84.65 0.46 0.74 16 7 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 8 Si 0.94 40.47 27.47 68.60 1.88 42.36 16 9 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.23 -8.48 6.54 99.48 0.65 -7.82 16 12 S 2.79 111.31 5.96 -56.49 -0.34 110.98 16 13 O -1.00 -49.07 16.87 -128.00 -2.16 -51.23 16 14 O -1.00 -42.46 17.21 -128.00 -2.20 -44.67 16 15 N -1.10 -32.59 5.01 -175.69 -0.88 -33.47 16 16 C 0.24 6.46 3.13 43.50 0.14 6.60 16 17 H 0.14 3.73 6.18 -2.39 -0.01 3.71 16 18 C 0.47 13.63 7.68 71.23 0.55 14.18 16 19 O -0.53 -18.89 17.19 21.96 0.38 -18.51 16 20 O -0.50 -10.59 13.34 -51.40 -0.69 -11.27 16 21 C -0.22 -4.54 5.37 24.59 0.13 -4.41 16 22 C -0.09 -1.49 10.04 21.22 0.21 -1.28 16 23 C -0.14 -1.68 10.18 21.22 0.22 -1.46 16 24 C -0.19 -2.21 11.23 66.72 0.75 -1.46 16 25 S 0.10 1.65 22.40 -56.49 -1.27 0.38 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 2.46 7.94 -2.39 -0.02 2.44 16 28 H 0.09 2.13 7.79 -2.39 -0.02 2.11 16 29 H 0.04 1.52 5.24 -2.39 -0.01 1.50 16 30 H 0.07 2.49 7.39 -2.39 -0.02 2.47 16 31 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.43 10.79 7.97 -96.75 -0.77 10.02 16 33 H 0.43 5.44 9.10 -74.06 -0.67 4.77 16 34 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.20 1.14 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -84.90 340.92 -2.70 -87.61 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -0.35 Total: 20.36 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 4.36 Total: -3.30 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -2.33 Total: -132.71 kcal Atomic # 8 Polarization: -121.01 SS G_CDS: -4.67 Total: -125.68 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.88 Total: 42.36 kcal Atomic # 16 Polarization: 112.96 SS G_CDS: -1.60 Total: 111.36 kcal Total: -84.90 -2.70 -87.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547545861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.095 kcal (2) G-P(sol) polarization free energy of solvation -84.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds