Wall clock time and date at job start Tue Mar 31 2020 18:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39405 * 120.23270 * 301.81029 * 3 2 1 5 5 C 1.38062 * 120.00655 * 180.02562 * 4 3 2 6 6 C 1.38539 * 120.49722 * 0.02562 * 5 4 3 7 7 C 1.37964 * 120.47959 * 359.67610 * 6 5 4 8 8 C 1.39662 * 119.96706 * 0.59829 * 7 6 5 9 9 C 1.47041 * 120.24240 * 179.69964 * 8 7 6 10 10 C 1.34874 * 119.99712 * 48.77123 * 9 8 7 11 11 C 1.46503 * 119.99995 * 9.80003 * 10 9 8 12 12 O 1.21683 * 120.00412 * 6.53430 * 11 10 9 13 13 N 1.34774 * 119.99679 * 186.53525 * 11 10 9 14 14 S 1.65603 * 120.00176 * 179.97438 * 13 11 10 15 15 O 1.42098 * 104.28082 * 181.07057 * 14 13 11 16 16 O 1.42096 * 104.27541 * 308.93020 * 14 13 11 17 17 C 1.81404 * 104.44752 * 64.99461 * 14 13 11 18 18 C 1.53000 * 109.46852 * 179.97438 * 17 14 13 19 19 C 1.50708 * 109.46736 * 180.02562 * 18 17 14 20 20 H 1.07997 * 120.00363 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99718 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00190 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99798 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47437 * 59.99551 * 23 21 19 25 25 H 1.48507 * 109.47040 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46843 * 299.99300 * 23 21 19 27 27 H 1.07998 * 119.99760 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.74650 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.75552 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.01674 * 180.32773 * 7 6 5 31 31 H 1.07994 * 120.00202 * 228.77361 * 9 8 7 32 32 H 1.07998 * 119.99576 * 190.07727 * 10 9 8 33 33 H 0.97004 * 120.00344 * 359.97438 * 13 11 10 34 34 H 1.08996 * 109.47745 * 300.00614 * 17 14 13 35 35 H 1.09004 * 109.47168 * 60.00834 * 17 14 13 36 36 H 1.08998 * 109.47597 * 300.00276 * 18 17 14 37 37 H 1.08997 * 109.46869 * 60.00667 * 18 17 14 38 38 H 0.96993 * 119.99926 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2702 -0.6339 1.0235 5 6 4.6508 -0.6300 1.0192 6 6 5.3489 0.0019 0.0030 7 6 4.6745 0.6309 -1.0232 8 6 3.2780 0.6440 -1.0354 9 6 2.5531 1.3182 -2.1226 10 6 2.8875 1.0773 -3.4068 11 6 3.8179 -0.0070 -3.7305 12 8 4.1964 -0.7651 -2.8572 13 7 4.2547 -0.1650 -4.9957 14 16 5.3069 -1.3903 -5.3616 15 8 5.5596 -1.2321 -6.7510 16 8 6.3504 -1.2529 -4.4069 17 6 4.3597 -2.9068 -5.0554 18 6 5.2338 -4.1246 -5.3618 19 6 4.4467 -5.3844 -5.1079 20 1 3.4251 -5.3227 -4.7630 21 6 5.0308 -6.6159 -5.3160 22 7 6.2747 -6.6911 -5.7365 23 14 4.0550 -8.1775 -5.0021 24 1 2.8560 -8.1965 -5.8779 25 1 4.9034 -9.3596 -5.2994 26 1 3.6298 -8.2179 -3.5799 27 1 2.7342 -1.1287 1.8200 28 1 5.1906 -1.1232 1.8140 29 1 6.4288 -0.0020 0.0117 30 1 5.2262 1.1166 -1.8144 31 1 1.7531 2.0062 -1.8929 32 1 2.4728 1.6868 -4.1961 33 1 3.9528 0.4391 -5.6921 34 1 4.0482 -2.9361 -4.0113 35 1 3.4793 -2.9212 -5.6978 36 1 5.5449 -4.0951 -6.4060 37 1 6.1145 -4.1104 -4.7197 38 1 6.6855 -7.5575 -5.8833 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588386090.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:22 Heat of formation + Delta-G solvation = -31.235073 kcal Electronic energy + Delta-G solvation = -25705.254344 eV Core-core repulsion = 21833.958748 eV Total energy + Delta-G solvation = -3871.295596 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63172 -39.20855 -36.73961 -36.56377 -35.65172 -34.56953 -34.30137 -33.89650 -31.50791 -31.18924 -30.11206 -25.66924 -25.10964 -23.86414 -22.61866 -21.66517 -20.26933 -19.32082 -19.12977 -17.75230 -17.67603 -16.56000 -16.02335 -15.86684 -15.67468 -15.23371 -14.97972 -14.79357 -14.58812 -14.46525 -14.22308 -13.87292 -13.46458 -13.33479 -13.08686 -12.98713 -12.55673 -12.48667 -12.24840 -11.82098 -11.75473 -11.68886 -11.64015 -11.40987 -11.07302 -11.01190 -10.88406 -10.53024 -10.40653 -10.35151 -10.21309 -9.72230 -9.20313 -9.02604 -8.58318 -8.49790 -6.12550 -4.17912 0.19316 0.48893 0.79406 1.43315 2.45428 2.65456 2.77463 2.83369 3.28358 3.32783 3.35144 3.62941 3.74816 3.97928 4.17280 4.23279 4.37367 4.59278 4.66689 4.81419 4.89474 4.92811 5.14782 5.21797 5.22832 5.48576 5.54422 5.58100 5.67011 5.72490 5.77006 6.07996 6.14932 6.31430 6.45243 6.62586 6.64473 7.27099 7.27239 7.33836 7.42340 7.80518 8.16336 8.84798 9.46692 10.98518 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.010628 B = 0.003796 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.860810 B = 7375.211472 C = 8595.145507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.257 3.743 3 C -0.017 4.017 4 C -0.079 4.079 5 C -0.107 4.107 6 C -0.089 4.089 7 C -0.053 4.053 8 C -0.026 4.026 9 C -0.024 4.024 10 C -0.200 4.200 11 C 0.557 3.443 12 O -0.478 6.478 13 N -1.055 6.055 14 S 2.566 3.434 15 O -0.955 6.955 16 O -0.937 6.937 17 C -0.575 4.575 18 C 0.031 3.969 19 C -0.519 4.519 20 H 0.061 0.939 21 C 0.059 3.941 22 N -0.891 5.891 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.428 0.572 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.033 0.967 37 H 0.036 0.964 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 19.551 9.456 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.057 4.057 3 C -0.020 4.020 4 C -0.100 4.100 5 C -0.125 4.125 6 C -0.108 4.108 7 C -0.072 4.072 8 C -0.029 4.029 9 C -0.044 4.044 10 C -0.222 4.222 11 C 0.345 3.655 12 O -0.351 6.351 13 N -0.815 5.815 14 S 2.667 3.333 15 O -0.946 6.946 16 O -0.927 6.927 17 C -0.710 4.710 18 C -0.009 4.009 19 C -0.559 4.559 20 H 0.079 0.921 21 C -0.143 4.143 22 N -0.529 5.529 23 Si 0.728 3.272 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.200 1.200 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.263 0.737 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.482 19.055 9.751 22.096 hybrid contribution -0.836 -0.889 -0.310 1.259 sum -6.317 18.166 9.442 21.425 Atomic orbital electron populations 1.81250 1.11950 1.08427 1.07928 1.25707 0.92674 0.93740 0.93627 1.15937 0.83937 1.04427 0.97726 1.21021 0.94466 0.97561 0.96945 1.21175 0.93458 0.98746 0.99127 1.21279 1.00748 0.95492 0.93271 1.21103 0.91777 0.97295 0.96987 1.18816 0.93514 0.97597 0.92975 1.22483 0.95011 0.95189 0.91707 1.23118 1.01665 0.99542 0.97882 1.18425 0.79968 0.85765 0.81316 1.91096 1.54756 1.44371 1.44894 1.55381 1.61454 1.47891 1.16808 1.06678 0.75659 0.76771 0.74239 1.93592 1.83470 1.85414 1.32125 1.93585 1.51874 1.84745 1.62511 1.30337 1.13339 1.15768 1.11539 1.18977 0.94288 0.89333 0.98252 1.20936 0.99020 0.89697 1.46233 0.92069 1.25046 0.95056 0.99383 0.94856 1.69940 1.12336 1.25431 1.45163 0.86522 0.79789 0.82049 0.78882 1.20087 1.21030 1.20034 0.85051 0.84942 0.84963 0.85430 0.83876 0.83588 0.73668 0.85008 0.86149 0.94828 0.94579 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.60 18.54 41.84 0.78 -4.82 16 2 C 0.26 2.97 14.43 -22.47 -0.32 2.64 16 3 C -0.02 -0.18 5.77 -106.47 -0.61 -0.79 16 4 C -0.08 -0.73 9.75 -39.21 -0.38 -1.11 16 5 C -0.11 -0.95 10.02 -39.53 -0.40 -1.34 16 6 C -0.09 -0.88 10.02 -39.57 -0.40 -1.28 16 7 C -0.05 -0.57 6.72 -39.15 -0.26 -0.83 16 8 C -0.03 -0.27 4.38 -104.73 -0.46 -0.73 16 9 C -0.02 -0.20 8.87 -37.21 -0.33 -0.53 16 10 C -0.20 -1.60 9.95 -37.45 -0.37 -1.97 16 11 C 0.56 6.72 6.72 -12.93 -0.09 6.63 16 12 O -0.48 -7.34 10.45 -11.92 -0.12 -7.47 16 13 N -1.05 -12.35 5.60 30.22 0.17 -12.18 16 14 S 2.57 44.63 5.11 -107.50 -0.55 44.08 16 15 O -0.96 -18.47 18.08 -57.54 -1.04 -19.51 16 16 O -0.94 -19.14 17.04 -64.79 -1.10 -20.25 16 17 C -0.58 -11.24 5.82 37.16 0.22 -11.03 16 18 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 19 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 23 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 27 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.13 1.30 7.44 -52.49 -0.39 0.91 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.43 3.23 8.77 -34.47 -0.30 2.93 16 34 H 0.13 2.53 7.19 -51.93 -0.37 2.16 16 35 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -37.37 355.12 -8.75 -46.12 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -3.99 Total: 0.90 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -3.96 Total: -22.89 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 1.68 Total: -42.71 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -2.27 Total: -47.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 44.63 SS G_CDS: -0.55 Total: 44.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.37 -8.75 -46.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588386090.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.885 kcal (2) G-P(sol) polarization free energy of solvation -37.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds