Wall clock time and date at job start Tue Mar 31 2020 18:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39405 * 120.23270 * 301.81029 * 3 2 1 5 5 C 1.38062 * 120.00655 * 180.02562 * 4 3 2 6 6 C 1.38539 * 120.49722 * 0.02562 * 5 4 3 7 7 C 1.37964 * 120.47959 * 359.67610 * 6 5 4 8 8 C 1.39662 * 119.96706 * 0.59829 * 7 6 5 9 9 C 1.47041 * 120.24240 * 179.69964 * 8 7 6 10 10 C 1.34874 * 119.99712 * 48.77123 * 9 8 7 11 11 C 1.46503 * 119.99995 * 9.80003 * 10 9 8 12 12 O 1.21683 * 120.00412 * 6.53430 * 11 10 9 13 13 N 1.34774 * 119.99679 * 186.53525 * 11 10 9 14 14 S 1.65603 * 120.00176 * 179.97438 * 13 11 10 15 15 O 1.42098 * 104.28082 * 181.07057 * 14 13 11 16 16 O 1.42096 * 104.27541 * 308.93020 * 14 13 11 17 17 C 1.81404 * 104.44752 * 64.99461 * 14 13 11 18 18 C 1.53000 * 109.46852 * 179.97438 * 17 14 13 19 19 C 1.50708 * 109.46736 * 180.02562 * 18 17 14 20 20 H 1.07997 * 120.00363 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99718 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00190 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99798 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47437 * 59.99551 * 23 21 19 25 25 H 1.48507 * 109.47040 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46843 * 299.99300 * 23 21 19 27 27 H 1.07998 * 119.99760 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.74650 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.75552 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.01674 * 180.32773 * 7 6 5 31 31 H 1.07994 * 120.00202 * 228.77361 * 9 8 7 32 32 H 1.07998 * 119.99576 * 190.07727 * 10 9 8 33 33 H 0.97004 * 120.00344 * 359.97438 * 13 11 10 34 34 H 1.08996 * 109.47745 * 300.00614 * 17 14 13 35 35 H 1.09004 * 109.47168 * 60.00834 * 17 14 13 36 36 H 1.08998 * 109.47597 * 300.00276 * 18 17 14 37 37 H 1.08997 * 109.46869 * 60.00667 * 18 17 14 38 38 H 0.96993 * 119.99926 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2702 -0.6339 1.0235 5 6 4.6508 -0.6300 1.0192 6 6 5.3489 0.0019 0.0030 7 6 4.6745 0.6309 -1.0232 8 6 3.2780 0.6440 -1.0354 9 6 2.5531 1.3182 -2.1226 10 6 2.8875 1.0773 -3.4068 11 6 3.8179 -0.0070 -3.7305 12 8 4.1964 -0.7651 -2.8572 13 7 4.2547 -0.1650 -4.9957 14 16 5.3069 -1.3903 -5.3616 15 8 5.5596 -1.2321 -6.7510 16 8 6.3504 -1.2529 -4.4069 17 6 4.3597 -2.9068 -5.0554 18 6 5.2338 -4.1246 -5.3618 19 6 4.4467 -5.3844 -5.1079 20 1 3.4251 -5.3227 -4.7630 21 6 5.0308 -6.6159 -5.3160 22 7 6.2747 -6.6911 -5.7365 23 14 4.0550 -8.1775 -5.0021 24 1 2.8560 -8.1965 -5.8779 25 1 4.9034 -9.3596 -5.2994 26 1 3.6298 -8.2179 -3.5799 27 1 2.7342 -1.1287 1.8200 28 1 5.1906 -1.1232 1.8140 29 1 6.4288 -0.0020 0.0117 30 1 5.2262 1.1166 -1.8144 31 1 1.7531 2.0062 -1.8929 32 1 2.4728 1.6868 -4.1961 33 1 3.9528 0.4391 -5.6921 34 1 4.0482 -2.9361 -4.0113 35 1 3.4793 -2.9212 -5.6978 36 1 5.5449 -4.0951 -6.4060 37 1 6.1145 -4.1104 -4.7197 38 1 6.6855 -7.5575 -5.8833 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588386090.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:21 Heat of formation + Delta-G solvation = -57.653887 kcal Electronic energy + Delta-G solvation = -25706.399950 eV Core-core repulsion = 21833.958748 eV Total energy + Delta-G solvation = -3872.441201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54625 -40.03983 -38.26145 -37.47486 -37.18879 -35.94985 -35.57357 -35.05403 -33.16919 -32.27191 -30.83140 -27.64935 -25.96852 -24.63762 -23.70539 -23.33624 -21.14729 -20.60986 -19.93107 -19.23410 -18.56910 -18.36933 -17.30671 -16.91880 -16.62679 -16.52300 -16.49205 -16.08208 -15.68460 -15.33094 -15.18601 -15.04500 -14.67369 -14.48434 -14.15538 -13.89673 -13.85850 -13.77448 -13.62818 -13.33651 -13.22066 -13.15136 -12.94024 -12.84810 -12.42423 -12.30750 -12.23602 -12.12740 -11.97806 -11.72975 -11.38589 -11.05709 -10.93734 -10.65065 -9.80676 -9.31814 -8.27502 -6.41225 -0.97038 -0.52628 0.01905 0.69565 1.39418 1.42632 1.46270 1.50956 1.56769 1.87165 1.99090 2.36482 2.60806 2.80912 2.97180 3.05780 3.09210 3.36644 3.60264 3.88697 3.95686 4.05240 4.09067 4.17645 4.38392 4.46480 4.52621 4.70180 4.79742 4.91152 4.99839 5.11394 5.23163 5.24927 5.35424 5.42690 5.58890 5.66145 5.80458 5.92559 6.04253 6.40032 6.50733 6.70785 7.28560 8.84616 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.010628 B = 0.003796 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.860810 B = 7375.211472 C = 8595.145507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.278 3.722 3 C -0.033 4.033 4 C -0.081 4.081 5 C -0.111 4.111 6 C -0.102 4.102 7 C -0.070 4.070 8 C -0.033 4.033 9 C -0.023 4.023 10 C -0.192 4.192 11 C 0.549 3.451 12 O -0.513 6.513 13 N -1.033 6.033 14 S 2.604 3.396 15 O -0.975 6.975 16 O -0.970 6.970 17 C -0.581 4.581 18 C 0.024 3.976 19 C -0.541 4.541 20 H 0.070 0.930 21 C 0.001 3.999 22 N -0.931 5.931 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.267 1.267 27 H 0.150 0.850 28 H 0.156 0.844 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.174 0.826 32 H 0.193 0.807 33 H 0.450 0.550 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.013 0.987 37 H 0.007 0.993 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 20.585 9.837 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.036 4.036 3 C -0.036 4.036 4 C -0.101 4.101 5 C -0.128 4.128 6 C -0.120 4.120 7 C -0.089 4.089 8 C -0.036 4.036 9 C -0.042 4.042 10 C -0.214 4.214 11 C 0.340 3.660 12 O -0.388 6.388 13 N -0.800 5.800 14 S 2.702 3.298 15 O -0.965 6.965 16 O -0.960 6.960 17 C -0.714 4.714 18 C -0.015 4.015 19 C -0.580 4.580 20 H 0.088 0.912 21 C -0.198 4.198 22 N -0.570 5.570 23 Si 0.795 3.205 24 H -0.188 1.188 25 H -0.206 1.206 26 H -0.192 1.192 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.191 0.809 32 H 0.210 0.790 33 H 0.291 0.709 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.032 0.968 37 H 0.026 0.974 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.381 20.095 10.108 23.674 hybrid contribution -0.193 -1.120 -0.375 1.197 sum -7.574 18.975 9.732 22.630 Atomic orbital electron populations 1.81269 1.12844 1.09832 1.09186 1.25781 0.92628 0.92649 0.92553 1.16064 0.83400 1.05545 0.98612 1.21310 0.94773 0.96992 0.97030 1.21456 0.93525 0.98439 0.99427 1.21555 1.01462 0.95457 0.93549 1.21215 0.92254 0.98033 0.97359 1.19061 0.93552 0.97441 0.93532 1.22817 0.95161 0.95123 0.91106 1.23286 1.00377 0.98573 0.99144 1.19225 0.79913 0.86401 0.80473 1.91098 1.56009 1.45949 1.45730 1.54799 1.60723 1.46646 1.17851 1.05232 0.75122 0.76374 0.73070 1.93562 1.84005 1.85712 1.33246 1.93544 1.53742 1.85218 1.63467 1.30256 1.13606 1.15276 1.12244 1.18802 0.94342 0.91952 0.96362 1.21424 0.99676 0.90936 1.45988 0.91161 1.26049 0.96068 1.03231 0.94437 1.70076 1.14177 1.26430 1.46344 0.85408 0.78477 0.77465 0.79175 1.18763 1.20566 1.19166 0.83272 0.82660 0.84224 0.85621 0.80925 0.79007 0.70947 0.84784 0.83688 0.96825 0.97445 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.61 18.54 19.00 0.35 -11.26 16 2 C 0.28 6.03 14.43 88.33 1.27 7.31 16 3 C -0.03 -0.64 5.77 -21.06 -0.12 -0.76 16 4 C -0.08 -1.38 9.75 22.51 0.22 -1.16 16 5 C -0.11 -1.83 10.02 22.30 0.22 -1.61 16 6 C -0.10 -1.96 10.02 22.28 0.22 -1.74 16 7 C -0.07 -1.45 6.72 22.55 0.15 -1.30 16 8 C -0.03 -0.63 4.38 -19.93 -0.09 -0.72 16 9 C -0.02 -0.31 8.87 23.81 0.21 -0.09 16 10 C -0.19 -2.40 9.95 23.65 0.24 -2.17 16 11 C 0.55 12.11 6.72 86.40 0.58 12.69 16 12 O -0.51 -15.32 10.45 12.08 0.13 -15.19 16 13 N -1.03 -22.03 5.60 -176.53 -0.99 -23.02 16 14 S 2.60 89.73 5.11 -56.49 -0.29 89.44 16 15 O -0.97 -37.22 18.08 -127.65 -2.31 -39.53 16 16 O -0.97 -40.14 17.04 -120.72 -2.06 -42.20 16 17 C -0.58 -22.78 5.82 71.98 0.42 -22.36 16 18 C 0.02 1.29 4.98 29.85 0.15 1.44 16 19 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 20 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 21 C 0.00 0.06 5.46 84.65 0.46 0.52 16 22 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 23 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 28 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 29 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 30 H 0.13 2.52 7.44 -2.91 -0.02 2.50 16 31 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.19 0.59 8.06 -2.91 -0.02 0.56 16 33 H 0.45 5.36 8.77 -96.74 -0.85 4.51 16 34 H 0.13 5.18 7.19 -2.39 -0.02 5.16 16 35 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 36 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -83.12 355.12 1.59 -81.53 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.26 Total: 10.99 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 4.17 Total: -40.28 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -0.35 Total: -90.61 kcal Atomic # 8 Polarization: -92.68 SS G_CDS: -4.24 Total: -96.92 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 89.73 SS G_CDS: -0.29 Total: 89.44 kcal Total: -83.12 1.59 -81.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588386090.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.874 kcal (2) G-P(sol) polarization free energy of solvation -83.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds