Wall clock time and date at job start Tue Mar 31 2020 18:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99540 * 2 1 4 4 C 1.50692 * 109.47063 * 274.99724 * 3 2 1 5 5 H 1.08003 * 120.00048 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99900 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99439 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00046 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47208 * 90.00061 * 8 6 4 10 10 H 1.48502 * 109.47247 * 210.00382 * 8 6 4 11 11 H 1.48508 * 109.46971 * 330.00173 * 8 6 4 12 12 S 1.65596 * 120.00140 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40170 * 156.46193 * 12 2 1 14 14 O 1.42097 * 106.40616 * 23.53678 * 12 2 1 15 15 N 1.65608 * 107.21450 * 270.00029 * 12 2 1 16 16 C 1.46501 * 120.00079 * 65.00239 * 15 12 2 17 17 C 1.50695 * 109.47096 * 164.99965 * 16 15 12 18 18 N 1.28640 * 124.72224 * 89.99640 * 17 16 15 19 19 C 1.33560 * 115.76823 * 179.97438 * 18 17 16 20 20 C 1.47263 * 123.14373 * 180.02562 * 19 18 17 21 21 N 1.34779 * 120.00229 * 359.97308 * 20 19 18 22 22 O 1.21638 * 120.00365 * 179.97438 * 20 19 18 23 23 C 1.35208 * 113.71740 * 0.02562 * 19 18 17 24 24 S 1.70772 * 124.71877 * 269.69690 * 17 16 15 25 25 H 1.08999 * 109.47596 * 269.99433 * 1 2 3 26 26 H 1.09002 * 109.47465 * 30.00249 * 1 2 3 27 27 H 1.09005 * 109.47295 * 149.99954 * 1 2 3 28 28 H 1.09000 * 109.46914 * 35.00078 * 3 2 1 29 29 H 1.09002 * 109.46223 * 154.99964 * 3 2 1 30 30 H 0.97007 * 119.99652 * 179.97438 * 7 6 4 31 31 H 0.97002 * 119.99894 * 244.99728 * 15 12 2 32 32 H 1.09002 * 109.46709 * 284.99775 * 16 15 12 33 33 H 1.09001 * 109.47081 * 44.99820 * 16 15 12 34 34 H 0.97001 * 119.99638 * 0.02562 * 21 20 19 35 35 H 0.96997 * 120.00809 * 179.97438 * 21 20 19 36 36 H 1.07999 * 125.58292 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1938 -2.2331 6 6 3.0005 2.9505 -1.6664 7 7 3.5040 3.6465 -0.6706 8 14 3.1784 3.5668 -3.4207 9 1 2.0180 4.4280 -3.7629 10 1 4.4320 4.3532 -3.5445 11 1 3.2265 2.4091 -4.3496 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1564 -0.5449 14 8 1.4114 -2.4063 -0.5454 15 7 2.5381 -1.8592 1.5811 16 6 1.3946 -2.1788 2.4393 17 6 1.8801 -2.8757 3.6841 18 7 2.2180 -2.2799 4.7730 19 6 2.6225 -3.0738 5.7679 20 6 3.0452 -2.5644 7.0834 21 7 3.0356 -1.2390 7.3276 22 8 3.4029 -3.3399 7.9496 23 6 2.6077 -4.3890 5.4544 24 16 2.0514 -4.5669 3.8479 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6500 2.0043 0.5895 29 1 3.1857 1.1177 0.4343 30 1 3.9681 4.4799 -0.8472 31 1 3.4388 -1.8967 1.9392 32 1 0.8793 -1.2588 2.7154 33 1 0.7080 -2.8324 1.9013 34 1 2.7500 -0.6206 6.6370 35 1 3.3137 -0.9034 8.1942 36 1 2.8952 -5.1952 6.1130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594860673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:02 Heat of formation + Delta-G solvation = -66.492129 kcal Electronic energy + Delta-G solvation = -24027.872666 eV Core-core repulsion = 20186.951818 eV Total energy + Delta-G solvation = -3840.920848 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.060 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77295 -38.83333 -36.75820 -35.61477 -35.40204 -35.27775 -33.90358 -32.46977 -30.99808 -27.83434 -27.41288 -25.48185 -25.10283 -22.35802 -21.95625 -20.14511 -19.31391 -18.89294 -17.76475 -17.43280 -16.86072 -16.57849 -16.23511 -16.17150 -15.52764 -15.36850 -14.95500 -14.44792 -14.35064 -14.08399 -13.53222 -13.43755 -13.31723 -13.15797 -12.37657 -12.28759 -12.19768 -11.75368 -11.69305 -11.50817 -11.21640 -11.11570 -10.74659 -10.63217 -10.56177 -10.29113 -10.08060 -10.05666 -10.00493 -9.81464 -9.56229 -9.34576 -8.47565 -8.14048 -6.09406 -4.13577 0.08383 0.81511 1.07278 1.24862 1.59247 3.02167 3.17742 3.29695 3.36439 3.40490 3.44179 3.62493 4.00764 4.38222 4.42424 4.79974 4.84693 4.89676 4.98883 5.24548 5.26772 5.47367 5.54467 5.71134 5.92467 6.22340 6.42496 6.50158 6.85697 6.91931 7.17815 7.19855 7.35236 7.54553 7.87771 7.91079 8.16557 8.88796 9.51871 10.99149 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.017845 B = 0.003075 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.732054 B = 9103.220522 C =10086.928783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.994 5.994 3 C 0.257 3.743 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.781 3.219 13 O -0.956 6.956 14 O -0.995 6.995 15 N -1.131 6.131 16 C 0.201 3.799 17 C 0.015 3.985 18 N -0.427 5.427 19 C 0.000 4.000 20 C 0.603 3.397 21 N -0.835 5.835 22 O -0.542 6.542 23 C -0.225 4.225 24 S 0.249 5.751 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.416 0.584 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.413 0.587 35 H 0.406 0.594 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 -13.394 12.942 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.837 5.837 3 C 0.135 3.865 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.789 3.211 13 O -0.940 6.940 14 O -0.978 6.978 15 N -0.890 5.890 16 C 0.071 3.929 17 C -0.266 4.266 18 N -0.144 5.144 19 C -0.136 4.136 20 C 0.385 3.615 21 N -0.398 5.398 22 O -0.419 6.419 23 C -0.368 4.368 24 S 0.506 5.494 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.249 0.751 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.244 0.756 35 H 0.237 0.763 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.622 -14.577 11.941 19.664 hybrid contribution 0.748 1.571 0.580 1.834 sum -4.874 -13.006 12.520 18.700 Atomic orbital electron populations 1.21413 0.80063 1.03743 1.00272 1.57590 1.14362 1.23284 1.88458 1.19074 0.91047 0.78618 0.97723 1.21489 1.36217 1.06381 0.92918 0.92131 1.24934 0.95065 0.96514 0.97507 1.69918 1.37206 1.15318 1.30958 0.86508 0.77539 0.78849 0.84631 1.20608 1.21060 1.19684 1.02021 0.73539 0.73019 0.72566 1.93664 1.40565 1.84751 1.75032 1.93530 1.67550 1.60225 1.76493 1.56432 1.14137 1.86434 1.31985 1.19687 0.88387 0.99935 0.84907 1.27043 1.05389 0.95648 0.98474 1.66910 1.11498 1.36915 0.99027 1.20334 1.07795 0.89643 0.95818 1.17025 0.76728 0.82819 0.84903 1.43633 1.69144 1.07323 1.19699 1.90862 1.48541 1.56808 1.45714 1.26760 1.06099 1.01561 1.02384 1.83146 1.54649 1.07066 1.04568 0.94212 0.90197 0.91442 0.94586 0.94376 0.92664 0.75088 0.88369 0.88137 0.75627 0.76280 0.79152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.68 59.85 0.64 2.05 16 2 N -0.99 -19.06 3.23 -123.05 -0.40 -19.45 16 3 C 0.26 6.17 5.08 -5.19 -0.03 6.14 16 4 C -0.53 -14.50 9.38 -34.44 -0.32 -14.82 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -25.63 13.29 55.43 0.74 -24.90 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 S 2.78 50.37 6.10 -107.50 -0.66 49.71 16 13 O -0.96 -21.65 17.11 -57.17 -0.98 -22.63 16 14 O -0.99 -18.52 16.21 -57.17 -0.93 -19.45 16 15 N -1.13 -15.03 6.05 -11.66 -0.07 -15.10 16 16 C 0.20 2.13 6.82 -5.20 -0.04 2.09 16 17 C 0.02 0.15 6.74 -13.62 -0.09 0.06 16 18 N -0.43 -4.72 10.12 -8.51 -0.09 -4.80 16 19 C 0.00 0.00 6.70 -84.53 -0.57 -0.56 16 20 C 0.60 6.93 8.07 -12.59 -0.10 6.83 16 21 N -0.84 -7.03 8.87 30.40 0.27 -6.76 16 22 O -0.54 -7.70 17.55 5.24 0.09 -7.61 16 23 C -0.23 -2.07 10.62 29.65 0.31 -1.75 16 24 S 0.25 1.99 22.92 -107.50 -2.46 -0.47 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 27 H 0.07 0.96 7.02 -51.93 -0.36 0.60 16 28 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 29 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.42 5.15 8.64 -34.48 -0.30 4.86 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 0.91 7.75 -51.93 -0.40 0.51 16 34 H 0.41 3.16 8.35 -40.82 -0.34 2.81 16 35 H 0.41 2.64 8.93 -40.82 -0.36 2.27 16 36 H 0.19 1.48 8.03 -52.49 -0.42 1.05 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -35.64 346.75 -8.38 -44.02 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.82 Total: 4.10 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.29 Total: 1.66 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: 0.45 Total: -71.01 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -1.81 Total: -49.68 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 52.36 SS G_CDS: -3.12 Total: 49.24 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.64 -8.38 -44.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594860673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.470 kcal (2) G-P(sol) polarization free energy of solvation -35.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds