Wall clock time and date at job start Tue Mar 31 2020 18:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99540 * 2 1 4 4 C 1.50692 * 109.47063 * 274.99724 * 3 2 1 5 5 H 1.08003 * 120.00048 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99900 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99439 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00046 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47208 * 90.00061 * 8 6 4 10 10 H 1.48502 * 109.47247 * 210.00382 * 8 6 4 11 11 H 1.48508 * 109.46971 * 330.00173 * 8 6 4 12 12 S 1.65596 * 120.00140 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40170 * 156.46193 * 12 2 1 14 14 O 1.42097 * 106.40616 * 23.53678 * 12 2 1 15 15 N 1.65608 * 107.21450 * 270.00029 * 12 2 1 16 16 C 1.46501 * 120.00079 * 65.00239 * 15 12 2 17 17 C 1.50695 * 109.47096 * 164.99965 * 16 15 12 18 18 N 1.28640 * 124.72224 * 89.99640 * 17 16 15 19 19 C 1.33560 * 115.76823 * 179.97438 * 18 17 16 20 20 C 1.47263 * 123.14373 * 180.02562 * 19 18 17 21 21 N 1.34779 * 120.00229 * 359.97308 * 20 19 18 22 22 O 1.21638 * 120.00365 * 179.97438 * 20 19 18 23 23 C 1.35208 * 113.71740 * 0.02562 * 19 18 17 24 24 S 1.70772 * 124.71877 * 269.69690 * 17 16 15 25 25 H 1.08999 * 109.47596 * 269.99433 * 1 2 3 26 26 H 1.09002 * 109.47465 * 30.00249 * 1 2 3 27 27 H 1.09005 * 109.47295 * 149.99954 * 1 2 3 28 28 H 1.09000 * 109.46914 * 35.00078 * 3 2 1 29 29 H 1.09002 * 109.46223 * 154.99964 * 3 2 1 30 30 H 0.97007 * 119.99652 * 179.97438 * 7 6 4 31 31 H 0.97002 * 119.99894 * 244.99728 * 15 12 2 32 32 H 1.09002 * 109.46709 * 284.99775 * 16 15 12 33 33 H 1.09001 * 109.47081 * 44.99820 * 16 15 12 34 34 H 0.97001 * 119.99638 * 0.02562 * 21 20 19 35 35 H 0.96997 * 120.00809 * 179.97438 * 21 20 19 36 36 H 1.07999 * 125.58292 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1938 -2.2331 6 6 3.0005 2.9505 -1.6664 7 7 3.5040 3.6465 -0.6706 8 14 3.1784 3.5668 -3.4207 9 1 2.0180 4.4280 -3.7629 10 1 4.4320 4.3532 -3.5445 11 1 3.2265 2.4091 -4.3496 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1564 -0.5449 14 8 1.4114 -2.4063 -0.5454 15 7 2.5381 -1.8592 1.5811 16 6 1.3946 -2.1788 2.4393 17 6 1.8801 -2.8757 3.6841 18 7 2.2180 -2.2799 4.7730 19 6 2.6225 -3.0738 5.7679 20 6 3.0452 -2.5644 7.0834 21 7 3.0356 -1.2390 7.3276 22 8 3.4029 -3.3399 7.9496 23 6 2.6077 -4.3890 5.4544 24 16 2.0514 -4.5669 3.8479 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6500 2.0043 0.5895 29 1 3.1857 1.1177 0.4343 30 1 3.9681 4.4799 -0.8472 31 1 3.4388 -1.8967 1.9392 32 1 0.8793 -1.2588 2.7154 33 1 0.7080 -2.8324 1.9013 34 1 2.7500 -0.6206 6.6370 35 1 3.3137 -0.9034 8.1942 36 1 2.8952 -5.1952 6.1130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594860673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:02 Heat of formation + Delta-G solvation = -98.525626 kcal Electronic energy + Delta-G solvation = -24029.261743 eV Core-core repulsion = 20186.951818 eV Total energy + Delta-G solvation = -3842.309925 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.060 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56322 -39.68597 -38.29101 -37.19089 -36.84460 -36.45733 -34.70549 -34.47473 -31.83380 -29.62869 -28.27473 -26.73288 -26.26927 -24.18522 -22.79380 -20.91794 -20.52006 -19.82257 -18.97665 -18.51995 -18.37469 -18.22909 -17.54330 -17.00916 -16.78807 -16.40324 -16.20492 -15.82620 -15.31486 -15.11863 -14.95979 -14.78554 -14.27851 -14.12569 -14.02296 -13.79130 -13.29907 -13.13498 -13.11211 -13.01648 -12.94556 -12.89596 -12.44122 -12.35356 -11.94493 -11.72479 -11.52943 -11.07289 -10.81915 -10.78449 -10.62148 -10.54840 -10.07743 -9.74884 -8.18396 -6.29748 -0.69800 -0.30539 0.14207 0.52554 0.74536 1.40746 1.43163 1.53343 2.03156 2.23614 2.42350 2.42766 2.65321 2.86238 3.13037 3.47850 3.59793 4.07686 4.10980 4.15370 4.19496 4.46418 4.64295 4.72012 4.81264 4.89587 5.15593 5.24909 5.49004 5.72418 5.72754 5.82465 6.03080 6.12461 6.14015 6.43483 6.79095 7.15325 7.39154 8.88905 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.017845 B = 0.003075 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.732054 B = 9103.220522 C =10086.928783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.001 6.001 3 C 0.272 3.728 4 C -0.549 4.549 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.954 3.046 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.274 1.274 12 S 2.802 3.198 13 O -1.007 7.007 14 O -0.999 6.999 15 N -1.119 6.119 16 C 0.193 3.807 17 C -0.008 4.008 18 N -0.437 5.437 19 C -0.023 4.023 20 C 0.599 3.401 21 N -0.821 5.821 22 O -0.578 6.578 23 C -0.225 4.225 24 S 0.316 5.684 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.030 0.970 29 H 0.016 0.984 30 H 0.267 0.733 31 H 0.421 0.579 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.419 0.581 35 H 0.415 0.585 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 -14.326 12.847 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.843 5.843 3 C 0.149 3.851 4 C -0.588 4.588 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.199 1.199 12 S 2.810 3.190 13 O -0.991 6.991 14 O -0.982 6.982 15 N -0.881 5.881 16 C 0.064 3.936 17 C -0.288 4.288 18 N -0.154 5.154 19 C -0.159 4.159 20 C 0.381 3.619 21 N -0.383 5.383 22 O -0.458 6.458 23 C -0.368 4.368 24 S 0.573 5.427 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.256 0.744 32 H 0.126 0.874 33 H 0.139 0.861 34 H 0.250 0.750 35 H 0.248 0.752 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.753 -15.487 11.832 20.626 hybrid contribution 1.038 1.750 0.673 2.143 sum -5.716 -13.737 12.505 19.436 Atomic orbital electron populations 1.21680 0.77797 1.03862 1.02889 1.57464 1.15908 1.21818 1.89143 1.18596 0.90473 0.80348 0.95722 1.21868 1.36041 1.06553 0.94358 0.92863 1.25727 0.94904 0.96884 1.01264 1.70007 1.37904 1.15748 1.32716 0.85610 0.78024 0.78329 0.80090 1.19103 1.20615 1.19854 1.01158 0.72178 0.72545 0.73156 1.93594 1.43073 1.85400 1.77061 1.93517 1.67413 1.59931 1.77324 1.55953 1.15455 1.85846 1.30853 1.19961 0.87474 1.01216 0.84924 1.26971 1.06442 0.97256 0.98122 1.66865 1.11604 1.37632 0.99294 1.20334 1.09400 0.90399 0.95809 1.17210 0.76426 0.83316 0.84935 1.43556 1.67920 1.06581 1.20279 1.90837 1.50481 1.57693 1.46770 1.27065 1.04844 1.01418 1.03498 1.82925 1.52612 1.04412 1.02733 0.90357 0.91283 0.90138 0.95182 0.96579 0.92456 0.74391 0.87400 0.86138 0.75009 0.75247 0.77985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.40 10.68 127.77 1.36 3.76 16 2 N -1.00 -37.70 3.23 -543.21 -1.75 -39.45 16 3 C 0.27 13.19 5.08 85.63 0.43 13.63 16 4 C -0.55 -30.25 9.38 25.60 0.24 -30.01 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.65 5.46 84.66 0.46 1.11 16 7 N -0.92 -53.34 13.29 21.45 0.28 -53.05 16 8 Si 0.95 43.91 29.54 68.60 2.03 45.93 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 S 2.80 99.23 6.10 -56.49 -0.34 98.89 16 13 O -1.01 -46.11 17.11 -128.00 -2.19 -48.30 16 14 O -1.00 -35.42 16.21 -128.00 -2.07 -37.50 16 15 N -1.12 -28.10 6.05 -190.79 -1.15 -29.25 16 16 C 0.19 3.62 6.82 85.63 0.58 4.20 16 17 C -0.01 -0.14 6.74 88.57 0.60 0.45 16 18 N -0.44 -8.99 10.12 -180.84 -1.83 -10.82 16 19 C -0.02 -0.48 6.70 40.56 0.27 -0.21 16 20 C 0.60 13.44 8.07 86.62 0.70 14.14 16 21 N -0.82 -13.29 8.87 -175.98 -1.56 -14.85 16 22 O -0.58 -16.32 17.55 -4.15 -0.07 -16.40 16 23 C -0.22 -3.72 10.62 67.12 0.71 -3.01 16 24 S 0.32 4.21 22.92 -56.49 -1.29 2.91 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 27 H 0.08 2.11 7.02 -2.38 -0.02 2.10 16 28 H 0.03 1.48 8.11 -2.39 -0.02 1.46 16 29 H 0.02 0.85 7.61 -2.39 -0.02 0.83 16 30 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 31 H 0.42 10.01 8.64 -96.74 -0.84 9.17 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.12 1.79 7.75 -2.39 -0.02 1.77 16 34 H 0.42 6.05 8.35 -92.71 -0.77 5.28 16 35 H 0.41 5.14 8.93 -92.71 -0.83 4.31 16 36 H 0.20 2.77 8.03 -2.91 -0.02 2.75 16 Total: -1.00 -76.70 346.75 -5.86 -82.56 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -1.26 Total: 15.28 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.37 Total: 4.06 kcal Atomic # 7 Polarization: -141.42 SS G_CDS: -6.01 Total: -147.44 kcal Atomic # 8 Polarization: -97.86 SS G_CDS: -4.34 Total: -102.20 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 103.44 SS G_CDS: -1.64 Total: 101.80 kcal Total: -76.70 -5.86 -82.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594860673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.963 kcal (2) G-P(sol) polarization free energy of solvation -76.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds