Wall clock time and date at job start Tue Mar 31 2020 18:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86792 * 119.99890 * 2 1 4 4 H 1.48499 * 109.47314 * 240.00475 * 3 2 1 5 5 H 1.48497 * 109.47481 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47368 * 120.00840 * 3 2 1 7 7 C 1.38798 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00366 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00000 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46977 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00402 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99923 * 180.02562 * 11 10 9 14 14 C 1.47043 * 120.44826 * 359.90701 * 13 11 10 15 15 C 1.53378 * 108.59045 * 235.04530 * 14 13 11 16 16 N 1.46966 * 108.77656 * 310.83501 * 15 14 13 17 17 S 1.65601 * 120.59136 * 235.16232 * 16 15 14 18 18 O 1.42101 * 104.27506 * 206.06705 * 17 16 15 19 19 O 1.42093 * 104.27753 * 333.92675 * 17 16 15 20 20 C 1.81399 * 104.44923 * 89.99859 * 17 16 15 21 21 C 1.52995 * 117.50160 * 253.61939 * 20 17 16 22 22 C 1.52994 * 117.49823 * 184.99619 * 20 17 16 23 23 C 1.46961 * 118.81251 * 55.13672 * 16 15 14 24 24 C 1.46959 * 120.59650 * 179.97438 * 13 11 10 25 25 H 0.96995 * 119.99881 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47035 * 60.00709 * 10 9 7 27 27 H 1.08995 * 109.47392 * 300.00202 * 10 9 7 28 28 H 1.08996 * 109.49194 * 115.39925 * 14 13 11 29 29 H 1.09002 * 109.77433 * 354.85796 * 14 13 11 30 30 H 1.09002 * 109.61172 * 191.00262 * 15 14 13 31 31 H 1.09000 * 109.60946 * 70.66564 * 15 14 13 32 32 H 1.09002 * 115.54862 * 39.33362 * 20 17 16 33 33 H 1.09001 * 117.49658 * 0.02562 * 21 20 17 34 34 H 1.08992 * 117.50067 * 145.02120 * 21 20 17 35 35 H 1.09002 * 117.50249 * 214.97865 * 22 20 17 36 36 H 1.09001 * 117.50355 * 0.02562 * 22 20 17 37 37 H 1.09004 * 109.60782 * 64.51986 * 23 16 15 38 38 H 1.09003 * 109.61006 * 184.86012 * 23 16 15 39 39 H 1.09002 * 109.60504 * 5.04184 * 24 13 11 40 40 H 1.08993 * 109.61643 * 244.52324 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1042 1.6963 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3432 -0.0008 14 6 4.2963 -6.1126 -0.0017 15 6 4.9092 -6.8595 -1.1930 16 7 4.4081 -8.2411 -1.1936 17 16 5.4609 -9.5194 -1.1924 18 8 4.7294 -10.5763 -1.7984 19 8 6.6391 -9.0036 -1.7963 20 6 5.7466 -9.8688 0.5645 21 6 7.0986 -9.4633 1.1547 22 6 6.7818 -10.9403 0.9124 23 6 2.9561 -8.4679 -1.1947 24 6 2.3431 -7.7247 -0.0008 25 1 -0.4850 0.8400 0.0004 26 1 3.1244 -3.7314 0.8895 27 1 3.1245 -3.7314 -0.8904 28 1 4.7251 -6.4900 0.9265 29 1 4.5003 -5.0458 -0.0947 30 1 5.9954 -6.8643 -1.1021 31 1 4.6220 -6.3658 -2.1213 32 1 4.8710 -9.7870 1.2086 33 1 7.8163 -8.9861 0.4874 34 1 7.1128 -9.1144 2.1872 35 1 6.5875 -11.5632 1.7856 36 1 7.2915 -11.4351 0.0856 37 1 2.5272 -8.0877 -2.1219 38 1 2.7525 -9.5352 -1.1080 39 1 1.2569 -7.7198 -0.0914 40 1 2.6332 -8.2192 0.9262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600229302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:59 Heat of formation + Delta-G solvation = -61.944927 kcal Electronic energy + Delta-G solvation = -24670.601197 eV Core-core repulsion = 20933.417874 eV Total energy + Delta-G solvation = -3737.183323 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.085 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95921 -37.78976 -37.52913 -37.26992 -36.31643 -33.98883 -32.45951 -31.92556 -29.38152 -26.92816 -25.51022 -24.15215 -24.02954 -23.17064 -22.08769 -19.92822 -18.90375 -18.24998 -17.61972 -17.20092 -16.57338 -16.44422 -15.88972 -15.67344 -15.48805 -14.90236 -14.83167 -14.60856 -14.05835 -14.01256 -13.72976 -13.37944 -12.95711 -12.82354 -12.57476 -12.55384 -12.26625 -12.22802 -11.99341 -11.79821 -11.66905 -11.65376 -11.61016 -11.27556 -11.07512 -11.06209 -10.99062 -10.79157 -9.84976 -9.76416 -9.44801 -9.08843 -8.51236 -8.27399 -6.54220 -6.24522 -3.95797 -0.13626 2.11876 2.68579 2.85994 2.96264 3.21386 3.23021 3.27056 3.42701 3.52617 3.75233 3.98821 4.17056 4.18443 4.26902 4.30273 4.59587 4.76490 4.89089 4.90326 4.92918 5.04086 5.04731 5.10747 5.15000 5.22381 5.32491 5.36067 5.46903 5.53288 5.60321 5.69945 5.79916 5.83528 6.04495 6.15341 6.48295 7.42882 7.56159 8.31736 8.45969 9.20654 10.82838 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.002609 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.091205 B =10730.132219 C =11228.306403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.536 3.464 12 O -0.514 6.514 13 N -0.619 5.619 14 C 0.093 3.907 15 C 0.106 3.894 16 N -0.995 5.995 17 S 2.637 3.363 18 O -0.950 6.950 19 O -0.950 6.950 20 C -0.689 4.689 21 C -0.124 4.124 22 C -0.129 4.129 23 C 0.106 3.894 24 C 0.099 3.901 25 H 0.269 0.731 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.159 -21.057 2.278 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.324 3.676 12 O -0.388 6.388 13 N -0.356 5.356 14 C -0.032 4.032 15 C -0.020 4.020 16 N -0.832 5.832 17 S 2.729 3.271 18 O -0.941 6.941 19 O -0.941 6.941 20 C -0.797 4.797 21 C -0.162 4.162 22 C -0.167 4.167 23 C -0.020 4.020 24 C -0.026 4.026 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.176 0.824 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.532 -21.660 1.515 25.585 hybrid contribution 1.712 1.426 0.816 2.373 sum 15.244 -20.234 2.331 25.441 Atomic orbital electron populations 1.70005 1.05969 1.27622 1.46674 1.24992 0.95028 0.99043 0.94486 0.86220 0.79237 0.81215 0.78808 1.19903 1.20819 1.19939 1.22809 0.94842 0.91598 1.59197 0.90955 1.85430 1.04854 0.96355 1.96712 1.23563 1.06628 0.95302 1.04758 1.20389 0.86206 0.86202 0.74832 1.90697 1.15145 1.85136 1.47806 1.47998 1.06152 1.05619 1.75801 1.22148 0.80671 1.02196 0.98206 1.21881 0.99404 0.80897 0.99842 1.57615 1.16973 1.19154 1.89494 1.04190 0.73508 0.73292 0.76106 1.93599 1.71634 1.55814 1.73010 1.93592 1.48817 1.78680 1.72986 1.32710 1.03143 1.16963 1.26841 1.22855 0.92186 0.97717 1.03451 1.22757 0.97308 0.92148 1.04514 1.21913 0.78680 1.01368 1.00053 1.21915 1.01459 0.81867 0.97357 0.92091 0.89199 0.89128 0.90988 0.87831 0.87953 0.89909 0.82367 0.86375 0.86879 0.86716 0.87608 0.89945 0.88091 0.87508 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.91 9.50 30.94 0.29 -14.61 16 8 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.92 4.49 36.01 0.16 -2.76 16 11 C 0.54 9.55 7.71 -10.98 -0.08 9.47 16 12 O -0.51 -11.17 15.27 5.56 0.08 -11.09 16 13 N -0.62 -7.92 2.95 -172.40 -0.51 -8.42 16 14 C 0.09 0.87 6.51 -3.55 -0.02 0.85 16 15 C 0.11 0.91 6.48 -3.59 -0.02 0.89 16 16 N -0.99 -8.95 3.20 -113.23 -0.36 -9.31 16 17 S 2.64 23.99 5.78 -107.50 -0.62 23.37 16 18 O -0.95 -11.53 16.70 -57.54 -0.96 -12.49 16 19 O -0.95 -10.76 16.01 -57.54 -0.92 -11.68 16 20 C -0.69 -4.17 6.59 -26.74 -0.18 -4.35 16 21 C -0.12 -0.62 10.16 -26.74 -0.27 -0.89 16 22 C -0.13 -0.65 10.29 -26.74 -0.28 -0.93 16 23 C 0.11 0.98 6.49 -3.58 -0.02 0.96 16 24 C 0.10 1.04 6.60 -3.58 -0.02 1.02 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.09 1.58 7.91 -51.92 -0.41 1.17 16 27 H 0.09 1.59 7.71 -51.92 -0.40 1.19 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.96 5.91 -51.93 -0.31 0.65 16 30 H 0.10 0.71 7.06 -51.93 -0.37 0.35 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.16 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 0.59 7.68 -51.93 -0.40 0.19 16 34 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.79 7.06 -51.93 -0.37 0.42 16 39 H 0.11 1.29 6.99 -51.93 -0.36 0.93 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -37.53 356.47 -10.50 -48.03 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.54 Total: -2.51 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.54 Total: -8.38 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.14 Total: -42.83 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.80 Total: -35.26 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 22.40 SS G_CDS: -2.83 Total: 19.57 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.53 -10.50 -48.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600229302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.915 kcal (2) G-P(sol) polarization free energy of solvation -37.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds