Wall clock time and date at job start Tue Mar 31 2020 18:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86792 * 119.99890 * 2 1 4 4 H 1.48499 * 109.47314 * 240.00475 * 3 2 1 5 5 H 1.48497 * 109.47481 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47368 * 120.00840 * 3 2 1 7 7 C 1.38798 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00366 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00000 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46977 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00402 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99923 * 180.02562 * 11 10 9 14 14 C 1.47043 * 120.44826 * 359.90701 * 13 11 10 15 15 C 1.53378 * 108.59045 * 235.04530 * 14 13 11 16 16 N 1.46966 * 108.77656 * 310.83501 * 15 14 13 17 17 S 1.65601 * 120.59136 * 235.16232 * 16 15 14 18 18 O 1.42101 * 104.27506 * 206.06705 * 17 16 15 19 19 O 1.42093 * 104.27753 * 333.92675 * 17 16 15 20 20 C 1.81399 * 104.44923 * 89.99859 * 17 16 15 21 21 C 1.52995 * 117.50160 * 253.61939 * 20 17 16 22 22 C 1.52994 * 117.49823 * 184.99619 * 20 17 16 23 23 C 1.46961 * 118.81251 * 55.13672 * 16 15 14 24 24 C 1.46959 * 120.59650 * 179.97438 * 13 11 10 25 25 H 0.96995 * 119.99881 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47035 * 60.00709 * 10 9 7 27 27 H 1.08995 * 109.47392 * 300.00202 * 10 9 7 28 28 H 1.08996 * 109.49194 * 115.39925 * 14 13 11 29 29 H 1.09002 * 109.77433 * 354.85796 * 14 13 11 30 30 H 1.09002 * 109.61172 * 191.00262 * 15 14 13 31 31 H 1.09000 * 109.60946 * 70.66564 * 15 14 13 32 32 H 1.09002 * 115.54862 * 39.33362 * 20 17 16 33 33 H 1.09001 * 117.49658 * 0.02562 * 21 20 17 34 34 H 1.08992 * 117.50067 * 145.02120 * 21 20 17 35 35 H 1.09002 * 117.50249 * 214.97865 * 22 20 17 36 36 H 1.09001 * 117.50355 * 0.02562 * 22 20 17 37 37 H 1.09004 * 109.60782 * 64.51986 * 23 16 15 38 38 H 1.09003 * 109.61006 * 184.86012 * 23 16 15 39 39 H 1.09002 * 109.60504 * 5.04184 * 24 13 11 40 40 H 1.08993 * 109.61643 * 244.52324 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1042 1.6963 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3432 -0.0008 14 6 4.2963 -6.1126 -0.0017 15 6 4.9092 -6.8595 -1.1930 16 7 4.4081 -8.2411 -1.1936 17 16 5.4609 -9.5194 -1.1924 18 8 4.7294 -10.5763 -1.7984 19 8 6.6391 -9.0036 -1.7963 20 6 5.7466 -9.8688 0.5645 21 6 7.0986 -9.4633 1.1547 22 6 6.7818 -10.9403 0.9124 23 6 2.9561 -8.4679 -1.1947 24 6 2.3431 -7.7247 -0.0008 25 1 -0.4850 0.8400 0.0004 26 1 3.1244 -3.7314 0.8895 27 1 3.1245 -3.7314 -0.8904 28 1 4.7251 -6.4900 0.9265 29 1 4.5003 -5.0458 -0.0947 30 1 5.9954 -6.8643 -1.1021 31 1 4.6220 -6.3658 -2.1213 32 1 4.8710 -9.7870 1.2086 33 1 7.8163 -8.9861 0.4874 34 1 7.1128 -9.1144 2.1872 35 1 6.5875 -11.5632 1.7856 36 1 7.2915 -11.4351 0.0856 37 1 2.5272 -8.0877 -2.1219 38 1 2.7525 -9.5352 -1.1080 39 1 1.2569 -7.7198 -0.0914 40 1 2.6332 -8.2192 0.9262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600229302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:58 Heat of formation + Delta-G solvation = -89.808248 kcal Electronic energy + Delta-G solvation = -24671.809442 eV Core-core repulsion = 20933.417874 eV Total energy + Delta-G solvation = -3738.391568 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.085 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.11302 -38.61490 -38.46609 -37.79455 -37.11851 -35.03384 -34.56670 -32.79134 -30.74411 -27.98059 -27.54030 -24.92580 -24.61773 -23.51256 -23.00914 -20.90720 -19.95121 -19.51031 -18.80282 -18.05781 -17.58612 -17.34836 -16.92398 -16.85591 -16.70958 -16.19579 -15.82572 -15.65027 -15.34642 -14.85779 -14.72237 -14.52347 -14.47664 -13.71410 -13.65414 -13.43571 -13.34644 -13.17028 -13.10927 -12.85270 -12.64270 -12.60471 -12.56871 -12.34901 -12.19603 -12.10637 -11.96570 -11.71661 -11.57539 -11.11266 -10.89053 -10.56315 -10.24154 -9.49524 -8.65478 -8.33053 -6.11137 -0.81509 1.25389 1.41867 1.45271 1.50323 1.56936 1.59059 2.10092 2.26645 2.29147 2.80457 3.01301 3.14093 3.25984 3.44148 3.56767 3.73276 3.78582 3.86783 3.95108 4.15549 4.17907 4.21720 4.29230 4.39606 4.47911 4.59635 4.62320 4.68698 4.71930 4.85375 4.86801 4.92624 5.05253 5.07669 5.41062 5.43361 5.50175 6.21027 6.25756 7.08371 7.13795 8.75877 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.002609 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.091205 B =10730.132219 C =11228.306403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.155 6.155 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.606 5.606 14 C 0.087 3.913 15 C 0.105 3.895 16 N -0.996 5.996 17 S 2.641 3.359 18 O -0.988 6.988 19 O -0.978 6.978 20 C -0.680 4.680 21 C -0.120 4.120 22 C -0.134 4.134 23 C 0.110 3.890 24 C 0.097 3.903 25 H 0.270 0.730 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.178 0.822 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.241 -21.626 3.715 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.072 5.928 10 C -0.276 4.276 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.340 5.340 14 C -0.037 4.037 15 C -0.021 4.021 16 N -0.833 5.833 17 S 2.738 3.262 18 O -0.978 6.978 19 O -0.968 6.968 20 C -0.791 4.791 21 C -0.158 4.158 22 C -0.173 4.173 23 C -0.016 4.016 24 C -0.027 4.027 25 H 0.079 0.921 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.195 0.805 33 H 0.135 0.865 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.666 -22.262 2.903 27.960 hybrid contribution 0.871 1.415 0.397 1.708 sum 17.536 -20.847 3.299 27.441 Atomic orbital electron populations 1.70181 1.08019 1.28630 1.48078 1.26125 0.95932 1.03340 0.93793 0.85012 0.77790 0.75708 0.79551 1.18666 1.20657 1.18498 1.23165 0.95377 0.91864 1.58769 0.89702 1.85628 1.10742 0.99362 1.97036 1.23389 1.03411 0.94235 1.06600 1.20155 0.85985 0.86664 0.75035 1.90682 1.17253 1.85709 1.50639 1.47983 1.07215 1.05360 1.73444 1.22484 0.78234 1.02875 1.00107 1.21939 1.00585 0.80499 0.99071 1.57528 1.16595 1.19301 1.89885 1.03830 0.72556 0.72438 0.77374 1.93551 1.72298 1.56869 1.75114 1.93552 1.49523 1.78950 1.74823 1.32375 1.04725 1.18616 1.23397 1.23059 0.90782 0.97571 1.04362 1.23043 0.96319 0.92634 1.05304 1.21839 0.78869 1.02058 0.98807 1.22104 1.00545 0.80656 0.99404 0.92059 0.87004 0.87302 0.87635 0.87513 0.85831 0.91017 0.80474 0.86504 0.84887 0.84806 0.87490 0.91448 0.86460 0.89453 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.61 13.22 21.65 0.29 -55.33 16 2 C 0.01 0.72 5.49 84.86 0.47 1.18 16 3 Si 1.00 42.79 29.55 68.60 2.03 44.81 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.54 -30.32 9.50 67.95 0.65 -29.68 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.43 20.57 -56.49 -1.16 -9.59 16 10 C -0.13 -4.72 4.49 71.24 0.32 -4.40 16 11 C 0.53 18.88 7.71 87.66 0.68 19.56 16 12 O -0.56 -25.30 15.27 -3.02 -0.05 -25.35 16 13 N -0.61 -14.43 2.95 -817.75 -2.41 -16.84 16 14 C 0.09 1.35 6.51 86.40 0.56 1.91 16 15 C 0.10 1.57 6.48 86.42 0.56 2.13 16 16 N -1.00 -16.01 3.20 -512.15 -1.64 -17.65 16 17 S 2.64 43.43 5.78 -56.49 -0.33 43.11 16 18 O -0.99 -23.17 16.70 -127.65 -2.13 -25.30 16 19 O -0.98 -20.78 16.01 -127.65 -2.04 -22.82 16 20 C -0.68 -5.85 6.59 30.59 0.20 -5.65 16 21 C -0.12 -0.73 10.16 30.59 0.31 -0.42 16 22 C -0.13 -0.91 10.29 30.59 0.31 -0.59 16 23 C 0.11 1.92 6.49 86.43 0.56 2.48 16 24 C 0.10 1.88 6.60 86.43 0.57 2.46 16 25 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.11 3.71 7.91 -2.40 -0.02 3.69 16 27 H 0.11 3.68 7.71 -2.40 -0.02 3.67 16 28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 1.63 5.91 -2.39 -0.01 1.61 16 30 H 0.12 1.36 7.06 -2.39 -0.02 1.34 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.18 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.79 7.68 -2.39 -0.02 0.77 16 34 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.12 1.68 7.06 -2.39 -0.02 1.66 16 39 H 0.09 2.11 6.99 -2.39 -0.02 2.09 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -84.75 356.47 -1.21 -85.95 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.05 Total: 10.03 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 5.19 Total: -11.03 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -3.76 Total: -89.81 kcal Atomic # 8 Polarization: -69.25 SS G_CDS: -4.22 Total: -73.47 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 35.01 SS G_CDS: -1.49 Total: 33.52 kcal Total: -84.75 -1.21 -85.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600229302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.853 kcal (2) G-P(sol) polarization free energy of solvation -84.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds