Wall clock time and date at job start Tue Mar 31 2020 18:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99802 * 2 1 4 4 H 1.48502 * 109.46781 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47024 * 299.99410 * 3 2 1 6 6 H 1.48494 * 109.47429 * 59.99758 * 3 2 1 7 7 C 1.37878 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00085 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99270 * 0.02562 * 7 2 1 10 10 O 1.42891 * 110.64678 * 56.85714 * 9 7 2 11 11 C 1.55160 * 110.71594 * 180.02562 * 9 7 2 12 12 C 1.54911 * 101.58346 * 154.04375 * 11 9 7 13 13 N 1.47428 * 104.82735 * 322.98303 * 12 11 9 14 14 C 1.34780 * 125.64588 * 204.09414 * 13 12 11 15 15 O 1.21565 * 119.99620 * 180.02562 * 14 13 12 16 16 C 1.47702 * 120.00285 * 0.02562 * 14 13 12 17 17 N 1.28973 * 124.86566 * 359.97438 * 16 14 13 18 18 C 1.33314 * 118.24272 * 180.02562 * 17 16 14 19 19 C 1.41607 * 128.75365 * 179.97438 * 18 17 16 20 20 C 1.35795 * 120.59433 * 180.02562 * 19 18 17 21 21 C 1.39499 * 120.80831 * 359.64258 * 20 19 18 22 22 O 1.35867 * 120.02450 * 180.33608 * 21 20 19 23 23 C 1.38015 * 119.94934 * 0.67013 * 21 20 19 24 24 C 1.39428 * 119.98804 * 359.38783 * 23 21 20 25 25 S 1.75863 * 124.87119 * 179.97438 * 16 14 13 26 26 C 1.47022 * 108.70298 * 24.36187 * 13 12 11 27 27 H 0.97004 * 120.00139 * 0.02562 * 1 2 3 28 28 H 0.96707 * 114.00110 * 303.14201 * 10 9 7 29 29 H 1.09000 * 111.01044 * 35.96272 * 11 9 7 30 30 H 1.09007 * 111.00052 * 272.11179 * 11 9 7 31 31 H 1.09004 * 110.36593 * 204.15146 * 12 11 9 32 32 H 1.08997 * 110.46097 * 81.86731 * 12 11 9 33 33 H 1.07997 * 119.70540 * 0.04671 * 19 18 17 34 34 H 1.07998 * 119.59830 * 179.97438 * 20 19 18 35 35 H 0.96704 * 114.00041 * 270.33293 * 22 21 20 36 36 H 1.08002 * 120.00949 * 179.67021 * 23 21 20 37 37 H 1.08996 * 109.88309 * 118.12616 * 26 13 12 38 38 H 1.09004 * 109.87915 * 239.29164 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.3664 -2.5701 -1.1194 11 6 2.2334 -3.7001 0.0018 12 6 1.3737 -4.8045 0.6659 13 7 0.5895 -4.1025 1.6982 14 6 0.0637 -4.6661 2.8039 15 8 -0.5684 -3.9877 3.5900 16 6 0.2556 -6.1080 3.0603 17 7 0.9069 -6.9133 2.2918 18 6 0.9978 -8.1937 2.6518 19 6 1.6504 -9.2581 1.9837 20 6 1.6382 -10.5121 2.5048 21 6 0.9902 -10.7782 3.7111 22 8 0.9937 -12.0375 4.2214 23 6 0.3396 -9.7629 4.3824 24 6 0.3414 -8.4698 3.8610 25 16 -0.3714 -6.9729 4.4574 26 6 0.4704 -2.6871 1.3186 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2682 -1.8419 -1.1662 29 1 3.1179 -3.4809 0.6000 30 1 2.5105 -3.9792 -1.0148 31 1 2.0132 -5.5594 1.1233 32 1 0.7106 -5.2636 -0.0673 33 1 2.1628 -9.0710 1.0517 34 1 2.1408 -11.3121 1.9816 35 1 0.2529 -12.5839 3.9253 36 1 -0.1670 -9.9690 5.3137 37 1 -0.5784 -2.4300 1.1704 38 1 0.9024 -2.0572 2.0962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601215399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:16 Heat of formation + Delta-G solvation = -53.055485 kcal Electronic energy + Delta-G solvation = -25681.573005 eV Core-core repulsion = 21809.331205 eV Total energy + Delta-G solvation = -3872.241800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80728 -39.59152 -38.46666 -37.29350 -35.68555 -34.33618 -32.19655 -31.53264 -30.41541 -29.33760 -27.81782 -26.10756 -24.84390 -23.64559 -22.72679 -21.79866 -19.81618 -19.44130 -18.90438 -18.22875 -17.24930 -17.03100 -16.29236 -15.73891 -15.70002 -15.38664 -15.12199 -14.80320 -14.44960 -14.22756 -14.16213 -13.35395 -13.20804 -13.10682 -12.95793 -12.89967 -12.22182 -11.88206 -11.76246 -11.62678 -11.47511 -11.11357 -10.84720 -10.81653 -10.63700 -10.50501 -10.46306 -10.29817 -10.13304 -9.56886 -9.32577 -8.83282 -8.69764 -8.38650 -8.36469 -8.01678 -6.32927 -4.41422 -0.17750 0.77140 0.90289 1.47121 1.70732 3.04383 3.17759 3.25195 3.27857 3.31226 3.44202 3.73539 3.85411 4.24158 4.29216 4.62688 4.78026 4.90727 4.95429 5.08878 5.40811 5.48471 5.60368 5.75230 5.82646 5.88234 5.89112 6.06270 6.12383 6.32198 6.49230 6.74475 6.79801 6.83838 7.13548 7.18874 7.26935 7.32881 7.70154 7.91864 7.99720 8.37652 8.62716 9.27820 9.40671 10.74885 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.002777 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.784358 B =10080.233427 C =10696.216535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.120 4.120 12 C 0.101 3.899 13 N -0.575 5.575 14 C 0.588 3.412 15 O -0.534 6.534 16 C 0.081 3.919 17 N -0.425 5.425 18 C 0.070 3.930 19 C -0.036 4.036 20 C -0.135 4.135 21 C 0.129 3.871 22 O -0.493 6.493 23 C -0.102 4.102 24 C -0.168 4.168 25 S 0.153 5.847 26 C 0.099 3.901 27 H 0.271 0.729 28 H 0.386 0.614 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.394 0.606 36 H 0.138 0.862 37 H 0.071 0.929 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -20.871 5.387 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.158 4.158 12 C -0.021 4.021 13 N -0.306 5.306 14 C 0.370 3.630 15 O -0.411 6.411 16 C -0.204 4.204 17 N -0.142 5.142 18 C -0.053 4.053 19 C -0.057 4.057 20 C -0.157 4.157 21 C 0.080 3.920 22 O -0.304 6.304 23 C -0.126 4.126 24 C -0.288 4.288 25 S 0.411 5.589 26 C -0.022 4.022 27 H 0.081 0.919 28 H 0.238 0.762 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.251 0.749 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.497 -20.114 6.433 21.124 hybrid contribution 0.012 0.558 -0.463 0.726 sum 0.509 -19.556 5.970 20.453 Atomic orbital electron populations 1.69575 1.06036 1.27969 1.49976 1.25090 0.95068 0.99868 0.93303 0.86325 0.80068 0.82604 0.77788 1.19551 1.20709 1.20734 1.21567 0.93809 0.89974 1.52042 0.91309 1.19501 0.85854 0.92348 0.81463 1.86087 1.51414 1.53394 1.48607 1.22815 0.97671 0.94872 1.00460 1.22615 0.94226 0.95514 0.89756 1.48612 1.49569 1.12638 1.19813 1.16511 0.81272 0.82920 0.82264 1.90838 1.42159 1.61570 1.46562 1.27501 0.99224 0.99055 0.94572 1.66157 1.15677 1.02031 1.30288 1.19188 1.01848 0.90568 0.93718 1.20437 0.96314 0.89518 0.99420 1.20962 1.01683 0.97507 0.95544 1.18249 0.96774 0.84900 0.92069 1.84824 1.52166 1.21447 1.71953 1.20489 1.01082 0.89756 1.01224 1.24050 1.05293 0.99325 1.00169 1.85185 1.53017 0.96527 1.24207 1.23290 1.02221 0.76599 1.00094 0.91891 0.76186 0.90547 0.90326 0.89560 0.91439 0.83830 0.84020 0.74891 0.84454 0.91118 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.44 10.97 55.43 0.61 -22.83 16 2 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 3 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -13.76 8.12 -34.44 -0.28 -14.04 16 8 H 0.07 1.74 7.76 -52.49 -0.41 1.34 16 9 C 0.25 5.95 0.86 -89.93 -0.08 5.87 16 10 O -0.58 -14.62 13.07 -35.23 -0.46 -15.08 16 11 C -0.12 -2.41 6.23 -24.58 -0.15 -2.56 16 12 C 0.10 1.88 6.10 -2.53 -0.02 1.87 16 13 N -0.58 -12.08 3.33 -171.67 -0.57 -12.65 16 14 C 0.59 12.01 7.85 -12.39 -0.10 11.92 16 15 O -0.53 -12.19 17.23 5.31 0.09 -12.10 16 16 C 0.08 1.37 7.29 -14.89 -0.11 1.26 16 17 N -0.43 -6.65 7.43 -8.56 -0.06 -6.71 16 18 C 0.07 0.93 6.93 -85.15 -0.59 0.34 16 19 C -0.04 -0.36 10.05 -39.17 -0.39 -0.76 16 20 C -0.14 -1.10 9.87 -39.99 -0.39 -1.50 16 21 C 0.13 1.10 6.70 -39.19 -0.26 0.84 16 22 O -0.49 -3.34 13.50 -19.32 -0.26 -3.60 16 23 C -0.10 -1.00 10.00 -39.22 -0.39 -1.39 16 24 C -0.17 -2.08 6.55 -38.35 -0.25 -2.33 16 25 S 0.15 2.12 23.17 -107.50 -2.49 -0.37 16 26 C 0.10 2.36 5.54 -3.06 -0.02 2.35 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.39 9.92 6.98 45.56 0.32 10.24 16 29 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.09 1.45 6.16 -51.93 -0.32 1.14 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.39 0.70 9.06 45.56 0.41 1.11 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.07 1.82 8.07 -51.93 -0.42 1.40 16 38 H 0.07 1.85 7.82 -51.93 -0.41 1.44 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -30.30 339.60 -8.66 -38.97 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -2.49 Total: 10.52 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.13 Total: 3.57 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.03 Total: -42.19 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.63 Total: -30.78 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.49 Total: -0.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.30 -8.66 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601215399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.089 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds