Wall clock time and date at job start Tue Mar 31 2020 18:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99802 * 2 1 4 4 H 1.48502 * 109.46781 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47024 * 299.99410 * 3 2 1 6 6 H 1.48494 * 109.47429 * 59.99758 * 3 2 1 7 7 C 1.37878 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00085 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99270 * 0.02562 * 7 2 1 10 10 O 1.42891 * 110.64678 * 56.85714 * 9 7 2 11 11 C 1.55160 * 110.71594 * 180.02562 * 9 7 2 12 12 C 1.54911 * 101.58346 * 154.04375 * 11 9 7 13 13 N 1.47428 * 104.82735 * 322.98303 * 12 11 9 14 14 C 1.34780 * 125.64588 * 204.09414 * 13 12 11 15 15 O 1.21565 * 119.99620 * 180.02562 * 14 13 12 16 16 C 1.47702 * 120.00285 * 0.02562 * 14 13 12 17 17 N 1.28973 * 124.86566 * 359.97438 * 16 14 13 18 18 C 1.33314 * 118.24272 * 180.02562 * 17 16 14 19 19 C 1.41607 * 128.75365 * 179.97438 * 18 17 16 20 20 C 1.35795 * 120.59433 * 180.02562 * 19 18 17 21 21 C 1.39499 * 120.80831 * 359.64258 * 20 19 18 22 22 O 1.35867 * 120.02450 * 180.33608 * 21 20 19 23 23 C 1.38015 * 119.94934 * 0.67013 * 21 20 19 24 24 C 1.39428 * 119.98804 * 359.38783 * 23 21 20 25 25 S 1.75863 * 124.87119 * 179.97438 * 16 14 13 26 26 C 1.47022 * 108.70298 * 24.36187 * 13 12 11 27 27 H 0.97004 * 120.00139 * 0.02562 * 1 2 3 28 28 H 0.96707 * 114.00110 * 303.14201 * 10 9 7 29 29 H 1.09000 * 111.01044 * 35.96272 * 11 9 7 30 30 H 1.09007 * 111.00052 * 272.11179 * 11 9 7 31 31 H 1.09004 * 110.36593 * 204.15146 * 12 11 9 32 32 H 1.08997 * 110.46097 * 81.86731 * 12 11 9 33 33 H 1.07997 * 119.70540 * 0.04671 * 19 18 17 34 34 H 1.07998 * 119.59830 * 179.97438 * 20 19 18 35 35 H 0.96704 * 114.00041 * 270.33293 * 22 21 20 36 36 H 1.08002 * 120.00949 * 179.67021 * 23 21 20 37 37 H 1.08996 * 109.88309 * 118.12616 * 26 13 12 38 38 H 1.09004 * 109.87915 * 239.29164 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.3664 -2.5701 -1.1194 11 6 2.2334 -3.7001 0.0018 12 6 1.3737 -4.8045 0.6659 13 7 0.5895 -4.1025 1.6982 14 6 0.0637 -4.6661 2.8039 15 8 -0.5684 -3.9877 3.5900 16 6 0.2556 -6.1080 3.0603 17 7 0.9069 -6.9133 2.2918 18 6 0.9978 -8.1937 2.6518 19 6 1.6504 -9.2581 1.9837 20 6 1.6382 -10.5121 2.5048 21 6 0.9902 -10.7782 3.7111 22 8 0.9937 -12.0375 4.2214 23 6 0.3396 -9.7629 4.3824 24 6 0.3414 -8.4698 3.8610 25 16 -0.3714 -6.9729 4.4574 26 6 0.4704 -2.6871 1.3186 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2682 -1.8419 -1.1662 29 1 3.1179 -3.4809 0.6000 30 1 2.5105 -3.9792 -1.0148 31 1 2.0132 -5.5594 1.1233 32 1 0.7106 -5.2636 -0.0673 33 1 2.1628 -9.0710 1.0517 34 1 2.1408 -11.3121 1.9816 35 1 0.2529 -12.5839 3.9253 36 1 -0.1670 -9.9690 5.3137 37 1 -0.5784 -2.4300 1.1704 38 1 0.9024 -2.0572 2.0962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601215399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:15 Heat of formation + Delta-G solvation = -76.386436 kcal Electronic energy + Delta-G solvation = -25682.584711 eV Core-core repulsion = 21809.331205 eV Total energy + Delta-G solvation = -3873.253506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81432 -41.01880 -39.39253 -38.98391 -36.57289 -36.08515 -34.18563 -32.31391 -32.02209 -30.51053 -29.51552 -27.56482 -26.32649 -24.71487 -24.00623 -22.86948 -21.53158 -20.76320 -19.84288 -19.30118 -19.05764 -18.36998 -17.39030 -17.13164 -16.97469 -16.68681 -16.55792 -16.13650 -15.76927 -15.58835 -15.00498 -14.82913 -14.79792 -14.73240 -14.08082 -13.99961 -13.81099 -13.49356 -13.38238 -12.90301 -12.68615 -12.56451 -12.53760 -12.32985 -12.26375 -12.11703 -11.79340 -11.49304 -11.34990 -11.24088 -10.84433 -10.60928 -10.33016 -9.88363 -9.61022 -9.26180 -8.28537 -6.44336 -1.20794 -0.16501 0.01648 0.45559 0.69883 1.40606 1.44111 1.54858 1.76852 1.82598 2.37001 2.46248 2.61813 2.97783 3.11664 3.37078 3.61369 3.80086 4.00263 4.06531 4.15527 4.19515 4.28626 4.40356 4.60563 4.71817 4.74680 4.84963 4.95175 5.03170 5.09816 5.17353 5.19422 5.32030 5.43885 5.47080 5.73088 6.00770 6.17807 6.35427 6.62811 6.77989 6.79307 7.27653 7.37280 8.78111 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.002777 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.784358 B =10080.233427 C =10696.216535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.283 1.283 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.236 3.764 10 O -0.589 6.589 11 C -0.113 4.113 12 C 0.114 3.886 13 N -0.585 5.585 14 C 0.589 3.411 15 O -0.571 6.571 16 C 0.034 3.966 17 N -0.418 5.418 18 C 0.033 3.967 19 C -0.032 4.032 20 C -0.126 4.126 21 C 0.159 3.841 22 O -0.496 6.496 23 C -0.117 4.117 24 C -0.162 4.162 25 S 0.161 5.839 26 C 0.116 3.884 27 H 0.272 0.728 28 H 0.379 0.621 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.421 0.579 36 H 0.155 0.845 37 H 0.040 0.960 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 -24.510 5.371 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.175 4.175 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.195 3.805 10 O -0.398 6.398 11 C -0.151 4.151 12 C -0.008 4.008 13 N -0.316 5.316 14 C 0.373 3.627 15 O -0.451 6.451 16 C -0.248 4.248 17 N -0.136 5.136 18 C -0.090 4.090 19 C -0.053 4.053 20 C -0.146 4.146 21 C 0.109 3.891 22 O -0.311 6.311 23 C -0.140 4.140 24 C -0.282 4.282 25 S 0.418 5.582 26 C -0.007 4.007 27 H 0.082 0.918 28 H 0.230 0.770 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.179 0.821 34 H 0.194 0.806 35 H 0.283 0.717 36 H 0.173 0.827 37 H 0.058 0.942 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.058 -23.789 6.400 24.721 hybrid contribution -0.462 1.315 -0.391 1.448 sum 1.596 -22.474 6.009 23.318 Atomic orbital electron populations 1.69674 1.07115 1.28604 1.50291 1.25828 0.95831 1.02860 0.92993 0.85384 0.79111 0.78844 0.77574 1.18899 1.20252 1.20929 1.21855 0.94036 0.91093 1.52309 0.91243 1.19698 0.86276 0.93643 0.80862 1.86074 1.51466 1.53049 1.49189 1.22813 0.97157 0.93472 1.01666 1.22618 0.93914 0.95120 0.89131 1.48609 1.50520 1.11610 1.20849 1.16944 0.79968 0.84524 0.81222 1.90788 1.43535 1.63180 1.47589 1.26557 1.03392 0.97486 0.97387 1.66008 1.14302 1.03134 1.30109 1.19528 1.04098 0.90258 0.95066 1.20745 0.95477 0.89196 0.99859 1.21339 1.00635 0.97502 0.95170 1.18352 0.94222 0.85390 0.91136 1.84765 1.53641 1.20612 1.72039 1.20748 1.02081 0.88897 1.02323 1.24181 1.04677 0.99489 0.99865 1.84992 1.53089 0.97281 1.22846 1.22815 1.00001 0.78360 0.99558 0.91846 0.76988 0.89768 0.88900 0.87393 0.91387 0.82092 0.80570 0.71705 0.82743 0.94168 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.63 10.97 21.45 0.24 -49.39 16 2 C 0.03 1.33 5.28 84.66 0.45 1.78 16 3 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.55 -29.09 8.12 25.60 0.21 -28.89 16 8 H 0.07 3.54 7.76 -2.91 -0.02 3.52 16 9 C 0.24 11.59 0.86 -10.35 -0.01 11.58 16 10 O -0.59 -30.30 13.07 -148.98 -1.95 -32.24 16 11 C -0.11 -4.51 6.23 31.99 0.20 -4.32 16 12 C 0.11 4.23 6.10 86.86 0.53 4.76 16 13 N -0.59 -25.62 3.33 -815.32 -2.71 -28.34 16 14 C 0.59 25.29 7.85 86.74 0.68 25.98 16 15 O -0.57 -27.79 17.23 -3.92 -0.07 -27.86 16 16 C 0.03 1.18 7.29 87.62 0.64 1.81 16 17 N -0.42 -12.85 7.43 -180.98 -1.35 -14.20 16 18 C 0.03 0.82 6.93 40.26 0.28 1.10 16 19 C -0.03 -0.52 10.05 22.53 0.23 -0.30 16 20 C -0.13 -1.42 9.87 22.01 0.22 -1.20 16 21 C 0.16 1.96 6.70 22.52 0.15 2.11 16 22 O -0.50 -4.06 13.50 -92.06 -1.24 -5.30 16 23 C -0.12 -1.89 10.00 22.50 0.23 -1.67 16 24 C -0.16 -3.72 6.55 23.07 0.15 -3.57 16 25 S 0.16 4.48 23.17 -56.49 -1.31 3.17 16 26 C 0.12 5.83 5.54 86.73 0.48 6.31 16 27 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.38 20.36 6.98 -74.05 -0.52 19.85 16 29 H 0.08 3.20 8.03 -2.39 -0.02 3.18 16 30 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 31 H 0.11 3.55 6.16 -2.39 -0.01 3.54 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 35 H 0.42 -0.86 9.06 -74.05 -0.67 -1.53 16 36 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.04 2.22 8.07 -2.39 -0.02 2.20 16 38 H 0.05 2.49 7.82 -2.38 -0.02 2.47 16 Total: -1.00 -68.67 339.60 -1.98 -70.65 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.04 Total: 24.04 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 4.43 Total: 15.51 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -3.82 Total: -91.93 kcal Atomic # 8 Polarization: -62.15 SS G_CDS: -3.26 Total: -65.41 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.31 Total: 3.17 kcal Total: -68.67 -1.98 -70.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601215399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.735 kcal (2) G-P(sol) polarization free energy of solvation -68.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds