Wall clock time and date at job start Tue Mar 31 2020 17:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86806 * 119.99707 * 2 1 4 4 H 1.48501 * 109.47045 * 269.99724 * 3 2 1 5 5 H 1.48500 * 109.47039 * 29.99718 * 3 2 1 6 6 H 1.48504 * 109.47037 * 149.99760 * 3 2 1 7 7 C 1.38945 * 120.00683 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99447 * 359.97438 * 7 2 1 9 9 N 1.37094 * 120.00487 * 180.02562 * 7 2 1 10 10 C 1.34779 * 120.00038 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00275 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99890 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.47256 * 180.02562 * 12 10 9 14 14 C 1.34861 * 117.00019 * 180.02562 * 13 12 10 15 15 O 1.21573 * 119.99958 * 359.97438 * 14 13 12 16 16 C 1.46803 * 119.99557 * 179.97438 * 14 13 12 17 17 C 1.35900 * 125.13979 * 179.97438 * 16 14 13 18 18 C 1.46212 * 106.08037 * 180.02562 * 17 16 14 19 19 C 1.39720 * 134.19288 * 180.02562 * 18 17 16 20 20 C 1.36613 * 119.71233 * 180.02562 * 19 18 17 21 21 N 1.48015 * 119.77375 * 180.02562 * 20 19 18 22 22 O 1.21803 * 120.00581 * 0.02562 * 21 20 19 23 23 O 1.21801 * 120.00043 * 180.02562 * 21 20 19 24 24 C 1.38838 * 120.44677 * 0.02562 * 20 19 18 25 25 C 1.37796 * 120.74702 * 359.97438 * 24 20 19 26 26 C 1.39027 * 119.85493 * 0.02562 * 25 24 20 27 27 O 1.34714 * 133.22813 * 179.69164 * 26 25 24 28 28 H 0.96994 * 120.00438 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99834 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47233 * 60.00086 * 12 10 9 31 31 H 1.09010 * 109.47257 * 300.00409 * 12 10 9 32 32 H 1.08008 * 126.96007 * 0.03586 * 17 16 14 33 33 H 1.08003 * 120.13868 * 0.02562 * 19 18 17 34 34 H 1.08003 * 119.62745 * 180.02562 * 24 20 19 35 35 H 1.08002 * 120.07355 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0090 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0014 9 7 3.3800 -1.2032 0.0011 10 6 4.0539 -2.3704 0.0021 11 8 3.4475 -3.4208 0.0021 12 6 5.5609 -2.3703 0.0021 13 8 6.0450 -3.7392 0.0027 14 6 7.3820 -3.9158 0.0033 15 8 8.1225 -2.9516 0.0029 16 6 7.9431 -5.2724 0.0046 17 6 9.2690 -5.5704 0.0048 18 6 9.3560 -7.0299 0.0055 19 6 10.4140 -7.9425 0.0064 20 6 10.1517 -9.2833 0.0063 21 7 11.2715 -10.2512 0.0079 22 8 12.4221 -9.8516 0.0097 23 8 11.0424 -11.4475 0.0074 24 6 8.8420 -9.7439 0.0048 25 6 7.7845 -8.8605 0.0039 26 6 8.0264 -7.4914 0.0039 27 8 7.2204 -6.4121 -0.0021 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3631 0.0014 30 1 5.9242 -1.8556 0.8916 31 1 5.9242 -1.8571 -0.8884 32 1 10.0919 -4.8708 0.0046 33 1 11.4347 -7.5895 0.0072 34 1 8.6498 -10.8067 0.0052 35 1 6.7700 -9.2308 0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731241590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:57 Heat of formation + Delta-G solvation = -72.762680 kcal Electronic energy + Delta-G solvation = -26281.483680 eV Core-core repulsion = 21829.801347 eV Total energy + Delta-G solvation = -4451.682333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.077 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.46553 -42.51698 -40.60939 -38.83144 -38.46195 -36.98589 -36.64466 -34.17129 -33.77883 -32.15083 -31.89873 -30.87502 -28.91764 -27.11418 -25.52858 -24.32220 -23.11393 -22.68406 -21.45196 -19.96588 -19.79591 -19.23987 -18.75308 -18.52038 -18.24634 -17.96740 -17.35900 -17.04279 -16.38806 -15.97483 -15.53794 -15.22380 -15.05107 -14.66256 -14.37998 -14.22327 -13.90740 -13.73174 -13.39268 -13.09433 -12.71828 -12.50353 -12.31840 -12.18569 -11.95542 -11.64987 -11.54181 -11.35088 -11.30449 -11.19624 -10.83832 -10.72228 -10.12949 -9.91921 -9.76784 -9.26846 -8.79727 -8.38303 -6.46953 -4.00557 -0.67824 -0.37707 0.80753 0.87205 0.89743 1.50555 2.23954 2.32571 2.55625 2.91534 2.96597 3.06104 3.43218 3.44699 3.59238 3.82814 3.96192 4.02584 4.10714 4.25460 4.46710 4.58831 4.86126 4.88828 4.95220 5.00841 5.08341 5.13701 5.27865 5.36416 5.37790 5.52413 5.87349 5.97729 6.08832 7.19755 7.21164 7.38946 7.91148 8.38126 8.74999 9.20571 9.54554 10.65034 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.037427 B = 0.001892 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.948131 B =14796.454319 C =15529.255769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.123 0.877 9 N -0.576 5.576 10 C 0.445 3.555 11 O -0.555 6.555 12 C 0.057 3.943 13 O -0.307 6.307 14 C 0.545 3.455 15 O -0.477 6.477 16 C 0.015 3.985 17 C -0.090 4.090 18 C -0.151 4.151 19 C 0.019 3.981 20 C -0.063 4.063 21 N 0.032 4.968 22 O -0.160 6.160 23 O -0.154 6.154 24 C -0.034 4.034 25 C -0.094 4.094 26 C 0.119 3.881 27 O -0.151 6.151 28 H 0.276 0.724 29 H 0.374 0.626 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.187 0.813 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.375 -12.971 -0.005 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.140 0.860 9 N -0.216 5.216 10 C 0.229 3.771 11 O -0.437 6.437 12 C -0.020 4.020 13 O -0.221 6.221 14 C 0.387 3.613 15 O -0.367 6.367 16 C -0.033 4.033 17 C -0.109 4.109 18 C -0.153 4.153 19 C 0.000 4.000 20 C -0.146 4.146 21 N 0.552 4.448 22 O -0.375 6.375 23 O -0.371 6.371 24 C -0.053 4.053 25 C -0.113 4.113 26 C 0.068 3.932 27 O -0.050 6.050 28 H 0.087 0.913 29 H 0.207 0.793 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.204 0.796 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 20.070 -12.767 -0.009 23.787 hybrid contribution 0.960 1.388 0.020 1.688 sum 21.030 -11.379 0.011 23.911 Atomic orbital electron populations 1.69609 1.05670 1.27887 1.47921 1.25050 0.95535 0.98116 0.97142 0.86673 0.79838 0.83812 0.79132 1.19347 1.19873 1.19350 1.19422 0.78556 0.96936 1.48898 0.85954 1.42014 1.07677 1.05610 1.66275 1.19075 0.86657 0.85279 0.86055 1.90627 1.68855 1.30645 1.53571 1.22953 0.95734 0.79137 1.04196 1.86723 1.20878 1.32262 1.82188 1.19231 0.82154 0.85839 0.74064 1.90973 1.60955 1.38885 1.45854 1.20815 0.89592 0.84140 1.08796 1.22758 0.95631 0.92806 0.99709 1.19585 0.92809 0.93519 1.09381 1.20116 1.00885 0.89212 0.89774 1.20542 0.87322 0.89142 1.17570 1.43456 1.02044 1.01730 0.97529 1.94564 1.05509 1.83937 1.53532 1.94558 1.90891 0.98454 1.53217 1.20791 0.88274 1.02222 0.93974 1.20026 1.01237 0.86533 1.03522 1.20092 0.88067 0.89120 0.95923 1.84311 1.34841 1.11928 1.73912 0.91281 0.79328 0.88740 0.88734 0.79606 0.81800 0.81376 0.81745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.43 13.96 55.50 0.77 -23.66 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.32 27.74 -169.99 -4.71 13.60 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.03 6.52 56.52 0.37 -4.66 16 7 C -0.31 -8.39 10.16 -14.94 -0.15 -8.54 16 8 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 9 N -0.58 -13.01 5.09 -10.96 -0.06 -13.07 16 10 C 0.44 9.75 7.86 -10.99 -0.09 9.66 16 11 O -0.56 -14.73 16.08 -14.11 -0.23 -14.96 16 12 C 0.06 0.92 5.96 36.00 0.21 1.14 16 13 O -0.31 -5.08 9.77 -48.44 -0.47 -5.56 16 14 C 0.54 7.36 7.94 34.19 0.27 7.63 16 15 O -0.48 -6.65 16.62 -19.32 -0.32 -6.97 16 16 C 0.01 0.17 7.10 -36.96 -0.26 -0.10 16 17 C -0.09 -0.74 10.81 -37.22 -0.40 -1.14 16 18 C -0.15 -1.20 6.38 -105.19 -0.67 -1.87 16 19 C 0.02 0.13 9.56 -39.62 -0.38 -0.25 16 20 C -0.06 -0.48 6.81 -80.31 -0.55 -1.03 16 21 N 0.03 0.31 4.45 33.78 0.15 0.47 16 22 O -0.16 -1.69 18.41 -29.46 -0.54 -2.23 16 23 O -0.15 -1.60 18.42 -29.46 -0.54 -2.14 16 24 C -0.03 -0.20 9.52 -39.52 -0.38 -0.58 16 25 C -0.09 -0.60 10.07 -39.45 -0.40 -1.00 16 26 C 0.12 1.05 7.41 -38.34 -0.28 0.77 16 27 O -0.15 -1.75 10.60 1.96 0.02 -1.72 16 28 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.37 7.24 5.76 -40.82 -0.24 7.00 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.19 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.16 0.84 7.57 -52.48 -0.40 0.44 16 34 H 0.17 0.68 7.58 -52.48 -0.40 0.29 16 35 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -33.57 335.94 -6.31 -39.88 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -2.28 Total: 5.49 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -3.17 Total: 5.81 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.87 Total: -36.26 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -2.09 Total: -33.58 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -4.71 Total: 13.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.57 -6.31 -39.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.883 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds