Wall clock time and date at job start Tue Mar 31 2020 17:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86806 * 119.99707 * 2 1 4 4 H 1.48501 * 109.47045 * 269.99724 * 3 2 1 5 5 H 1.48500 * 109.47039 * 29.99718 * 3 2 1 6 6 H 1.48504 * 109.47037 * 149.99760 * 3 2 1 7 7 C 1.38945 * 120.00683 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99447 * 359.97438 * 7 2 1 9 9 N 1.37094 * 120.00487 * 180.02562 * 7 2 1 10 10 C 1.34779 * 120.00038 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00275 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99890 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.47256 * 180.02562 * 12 10 9 14 14 C 1.34861 * 117.00019 * 180.02562 * 13 12 10 15 15 O 1.21573 * 119.99958 * 359.97438 * 14 13 12 16 16 C 1.46803 * 119.99557 * 179.97438 * 14 13 12 17 17 C 1.35900 * 125.13979 * 179.97438 * 16 14 13 18 18 C 1.46212 * 106.08037 * 180.02562 * 17 16 14 19 19 C 1.39720 * 134.19288 * 180.02562 * 18 17 16 20 20 C 1.36613 * 119.71233 * 180.02562 * 19 18 17 21 21 N 1.48015 * 119.77375 * 180.02562 * 20 19 18 22 22 O 1.21803 * 120.00581 * 0.02562 * 21 20 19 23 23 O 1.21801 * 120.00043 * 180.02562 * 21 20 19 24 24 C 1.38838 * 120.44677 * 0.02562 * 20 19 18 25 25 C 1.37796 * 120.74702 * 359.97438 * 24 20 19 26 26 C 1.39027 * 119.85493 * 0.02562 * 25 24 20 27 27 O 1.34714 * 133.22813 * 179.69164 * 26 25 24 28 28 H 0.96994 * 120.00438 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99834 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47233 * 60.00086 * 12 10 9 31 31 H 1.09010 * 109.47257 * 300.00409 * 12 10 9 32 32 H 1.08008 * 126.96007 * 0.03586 * 17 16 14 33 33 H 1.08003 * 120.13868 * 0.02562 * 19 18 17 34 34 H 1.08003 * 119.62745 * 180.02562 * 24 20 19 35 35 H 1.08002 * 120.07355 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0090 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0014 9 7 3.3800 -1.2032 0.0011 10 6 4.0539 -2.3704 0.0021 11 8 3.4475 -3.4208 0.0021 12 6 5.5609 -2.3703 0.0021 13 8 6.0450 -3.7392 0.0027 14 6 7.3820 -3.9158 0.0033 15 8 8.1225 -2.9516 0.0029 16 6 7.9431 -5.2724 0.0046 17 6 9.2690 -5.5704 0.0048 18 6 9.3560 -7.0299 0.0055 19 6 10.4140 -7.9425 0.0064 20 6 10.1517 -9.2833 0.0063 21 7 11.2715 -10.2512 0.0079 22 8 12.4221 -9.8516 0.0097 23 8 11.0424 -11.4475 0.0074 24 6 8.8420 -9.7439 0.0048 25 6 7.7845 -8.8605 0.0039 26 6 8.0264 -7.4914 0.0039 27 8 7.2204 -6.4121 -0.0021 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3631 0.0014 30 1 5.9242 -1.8556 0.8916 31 1 5.9242 -1.8571 -0.8884 32 1 10.0919 -4.8708 0.0046 33 1 11.4347 -7.5895 0.0072 34 1 8.6498 -10.8067 0.0052 35 1 6.7700 -9.2308 0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731241590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:56 Heat of formation + Delta-G solvation = -94.326509 kcal Electronic energy + Delta-G solvation = -26282.418758 eV Core-core repulsion = 21829.801347 eV Total energy + Delta-G solvation = -4452.617411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.077 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.15648 -43.23323 -41.71859 -40.22694 -39.42340 -37.82980 -37.72848 -36.12216 -34.44421 -33.89351 -32.78182 -31.62620 -30.25538 -27.87939 -26.80225 -25.66361 -23.79405 -23.36487 -22.30055 -21.59500 -20.72431 -20.57949 -20.00456 -19.40250 -18.89011 -18.67234 -18.26919 -18.21598 -17.62196 -17.39295 -16.86377 -16.21211 -15.83727 -15.76251 -15.57160 -15.29217 -14.80242 -14.70498 -14.41368 -14.24275 -14.19330 -13.94225 -13.91183 -13.02063 -12.83054 -12.64630 -12.47281 -12.38229 -12.34011 -12.32215 -12.03929 -12.00311 -11.81265 -11.60676 -10.66012 -10.56295 -10.36333 -9.89843 -8.47368 -6.11277 -1.35678 -1.04942 0.11731 0.20041 0.20729 0.70244 1.28807 1.32731 1.33381 1.43604 1.44996 1.73201 1.97534 2.19634 2.57737 2.92107 3.03110 3.06928 3.27907 3.38630 3.46271 3.73388 3.80488 3.92040 4.05776 4.09359 4.27547 4.35840 4.40145 4.56762 4.71698 4.84222 4.88225 5.15318 5.41396 5.45681 5.83029 6.20818 6.41502 6.47580 6.75121 7.23054 7.75088 8.69097 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.037427 B = 0.001892 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.948131 B =14796.454319 C =15529.255769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.963 3.037 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.228 1.228 7 C -0.335 4.335 8 H 0.059 0.941 9 N -0.573 5.573 10 C 0.445 3.555 11 O -0.611 6.611 12 C 0.067 3.933 13 O -0.337 6.337 14 C 0.551 3.449 15 O -0.484 6.484 16 C -0.024 4.024 17 C -0.050 4.050 18 C -0.159 4.159 19 C 0.033 3.967 20 C -0.073 4.073 21 N 0.034 4.966 22 O -0.176 6.176 23 O -0.167 6.167 24 C -0.019 4.019 25 C -0.094 4.094 26 C 0.109 3.891 27 O -0.178 6.178 28 H 0.282 0.718 29 H 0.395 0.605 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.215 0.785 33 H 0.184 0.816 34 H 0.190 0.810 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.746 -11.815 0.037 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.151 1.151 7 C -0.463 4.463 8 H 0.077 0.923 9 N -0.215 5.215 10 C 0.232 3.768 11 O -0.496 6.496 12 C -0.009 4.009 13 O -0.252 6.252 14 C 0.395 3.605 15 O -0.373 6.373 16 C -0.071 4.071 17 C -0.069 4.069 18 C -0.161 4.161 19 C 0.014 3.986 20 C -0.156 4.156 21 N 0.551 4.449 22 O -0.389 6.389 23 O -0.383 6.383 24 C -0.038 4.038 25 C -0.113 4.113 26 C 0.058 3.942 27 O -0.078 6.078 28 H 0.092 0.908 29 H 0.231 0.769 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.231 0.769 33 H 0.201 0.799 34 H 0.207 0.793 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 23.498 -11.620 0.034 26.215 hybrid contribution -0.086 0.797 0.002 0.802 sum 23.412 -10.823 0.036 25.793 Atomic orbital electron populations 1.69783 1.08164 1.29629 1.48884 1.26128 0.96478 1.02769 0.95484 0.85402 0.79666 0.76543 0.80207 1.17887 1.19844 1.15097 1.18989 0.80776 0.95301 1.51263 0.92254 1.41778 1.06066 1.06996 1.66629 1.20178 0.89376 0.84052 0.83152 1.90602 1.70991 1.32713 1.55254 1.22810 0.90703 0.80028 1.07385 1.86701 1.23064 1.32309 1.83088 1.19383 0.80826 0.86878 0.73431 1.90953 1.60544 1.39356 1.46478 1.20614 0.90356 0.83353 1.12817 1.23124 0.95001 0.93286 0.95510 1.19605 0.92650 0.93513 1.10305 1.20271 1.01559 0.88698 0.88075 1.20681 0.87166 0.89099 1.18674 1.43678 1.02319 1.01873 0.97026 1.94558 1.06301 1.83925 1.54151 1.94552 1.90958 0.99102 1.53655 1.21058 0.87412 1.03257 0.92045 1.20297 1.02383 0.85565 1.03033 1.20537 0.88379 0.89484 0.95789 1.84257 1.35974 1.12646 1.74926 0.90796 0.76903 0.85440 0.85357 0.76864 0.79857 0.79274 0.79746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.78 13.96 21.66 0.30 -53.48 16 2 C -0.01 -0.45 5.50 84.92 0.47 0.01 16 3 Si 0.96 36.49 27.74 68.60 1.90 38.39 16 4 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.23 -7.11 6.52 99.48 0.65 -6.46 16 7 C -0.33 -18.89 10.16 84.04 0.85 -18.04 16 8 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 9 N -0.57 -25.77 5.09 -306.99 -1.56 -27.33 16 10 C 0.45 19.68 7.86 87.66 0.69 20.37 16 11 O -0.61 -33.98 16.08 15.73 0.25 -33.73 16 12 C 0.07 2.04 5.96 71.23 0.42 2.47 16 13 O -0.34 -10.96 9.77 -50.57 -0.49 -11.46 16 14 C 0.55 14.15 7.94 70.06 0.56 14.71 16 15 O -0.48 -12.27 16.62 19.60 0.33 -11.94 16 16 C -0.02 -0.51 7.10 23.97 0.17 -0.34 16 17 C -0.05 -0.70 10.81 23.80 0.26 -0.45 16 18 C -0.16 -2.16 6.38 -20.24 -0.13 -2.29 16 19 C 0.03 0.37 9.56 22.25 0.21 0.58 16 20 C -0.07 -0.96 6.81 36.14 0.25 -0.71 16 21 N 0.03 0.61 4.45 -47.03 -0.21 0.40 16 22 O -0.18 -3.46 18.41 18.88 0.35 -3.11 16 23 O -0.17 -3.24 18.42 18.89 0.35 -2.89 16 24 C -0.02 -0.19 9.52 22.31 0.21 0.03 16 25 C -0.09 -1.02 10.07 22.35 0.23 -0.79 16 26 C 0.11 1.78 7.41 23.07 0.17 1.95 16 27 O -0.18 -4.06 10.60 -12.32 -0.13 -4.19 16 28 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.39 14.22 5.76 -92.70 -0.53 13.69 16 30 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.13 3.06 8.14 -2.38 -0.02 3.04 16 32 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.18 1.31 7.57 -2.91 -0.02 1.28 16 34 H 0.19 1.03 7.58 -2.91 -0.02 1.01 16 35 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -79.43 335.94 6.05 -73.38 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.61 Total: 18.46 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 4.36 Total: 17.49 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -1.47 Total: -80.41 kcal Atomic # 8 Polarization: -67.97 SS G_CDS: 0.65 Total: -67.32 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 1.90 Total: 38.39 kcal Total: -79.43 6.05 -73.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.944 kcal (2) G-P(sol) polarization free energy of solvation -79.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds