Wall clock time and date at job start Tue Mar 31 2020 17:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47162 * 246.01078 * 3 2 1 5 5 C 1.36930 * 120.00132 * 273.33693 * 4 3 2 6 6 H 1.08001 * 120.00493 * 187.23981 * 5 4 3 7 7 C 1.38813 * 119.99898 * 7.23869 * 5 4 3 8 8 N 1.31617 * 120.00384 * 25.59188 * 7 5 4 9 9 Si 1.86806 * 120.00181 * 205.59189 * 7 5 4 10 10 H 1.48503 * 109.47018 * 59.99959 * 9 7 5 11 11 H 1.48492 * 109.47551 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47225 * 300.00572 * 9 7 5 13 13 S 1.65596 * 119.99848 * 93.33761 * 4 3 2 14 14 O 1.42105 * 106.40462 * 156.46142 * 13 4 3 15 15 O 1.42098 * 106.40383 * 23.54160 * 13 4 3 16 16 C 1.76204 * 107.21841 * 270.00015 * 13 4 3 17 17 C 1.38337 * 119.93767 * 270.02264 * 16 13 4 18 18 C 1.38300 * 120.23155 * 179.97438 * 17 16 13 19 19 C 1.38044 * 120.11812 * 0.02562 * 18 17 16 20 20 C 1.39280 * 119.88465 * 359.97438 * 19 18 17 21 21 C 1.48461 * 120.11975 * 180.02562 * 20 19 18 22 22 N 1.34050 * 126.67290 * 179.68620 * 21 20 19 23 23 N 1.28988 * 107.26528 * 179.83741 * 22 21 20 24 24 N 1.28730 * 108.94396 * 0.43544 * 23 22 21 25 25 H 0.97001 * 125.34250 * 179.74604 * 24 23 22 26 26 N 1.28867 * 109.31922 * 359.72107 * 24 23 22 27 27 C 1.38002 * 119.94025 * 90.00028 * 16 13 4 28 28 H 1.09002 * 109.47289 * 126.01434 * 3 2 1 29 29 H 1.09003 * 109.47452 * 6.01117 * 3 2 1 30 30 H 0.97001 * 120.00515 * 179.97438 * 8 7 5 31 31 H 1.07989 * 119.88458 * 0.02562 * 17 16 13 32 32 H 1.07996 * 119.94005 * 180.02562 * 18 17 16 33 33 H 1.08002 * 120.05938 * 180.27481 * 19 18 17 34 34 H 1.08006 * 120.06282 * 0.02562 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0960 0.5624 1.2619 5 6 3.2586 1.9159 1.3914 6 1 3.7270 2.3214 2.2760 7 6 2.8213 2.7668 0.3856 8 7 1.8460 2.3928 -0.4152 9 14 3.6171 4.4429 0.1685 10 1 5.0653 4.2707 -0.1116 11 1 2.9748 5.1525 -0.9668 12 1 3.4444 5.2375 1.4110 13 16 3.4512 -0.4394 2.5317 14 8 4.3757 0.2632 3.3509 15 8 3.7237 -1.7164 1.9713 16 6 1.9789 -0.6175 3.4832 17 6 1.7145 0.2625 4.5174 18 6 0.5605 0.1287 5.2678 19 6 -0.3337 -0.8851 4.9884 20 6 -0.0725 -1.7739 3.9483 21 6 -1.0309 -2.8658 3.6429 22 7 -0.9147 -3.7854 2.6746 23 7 -1.9508 -4.5504 2.7469 24 7 -2.7054 -4.1424 3.7067 25 1 -3.5487 -4.5446 3.9672 26 7 -2.1644 -3.1160 4.2675 27 6 1.0914 -1.6342 3.1952 28 1 2.9710 0.6051 -0.8312 29 1 2.9718 -1.0212 -0.1076 30 1 1.5402 2.9875 -1.1178 31 1 2.4113 1.0573 4.7390 32 1 0.3586 0.8186 6.0738 33 1 -1.2368 -0.9861 5.5721 34 1 1.2987 -2.3208 2.3876 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737692818.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:07 Heat of formation + Delta-G solvation = 126.642668 kcal Electronic energy + Delta-G solvation = -26212.791965 eV Core-core repulsion = 22277.094869 eV Total energy + Delta-G solvation = -3935.697095 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.40134 -38.80634 -36.76450 -36.04954 -34.62658 -34.46670 -34.35785 -33.51724 -31.82133 -30.84450 -30.33708 -27.55765 -24.76855 -24.37514 -24.18776 -22.42640 -21.58175 -19.24821 -18.69580 -18.15143 -17.45299 -17.09438 -16.73497 -16.21140 -15.54048 -15.17031 -14.72015 -14.64828 -14.36574 -13.95892 -13.50892 -13.38213 -13.09227 -12.82657 -12.40120 -12.30986 -11.94436 -11.74734 -11.54208 -11.45708 -11.33028 -11.20308 -11.09460 -11.07139 -10.93252 -10.89117 -10.84755 -10.68550 -10.34156 -10.17741 -10.02048 -9.67285 -8.93270 -8.54991 -8.48174 -6.83965 -4.16188 0.81411 1.20244 1.36690 1.57151 2.24167 2.45992 3.02395 3.09289 3.15066 3.61789 3.75287 3.90752 3.93762 4.14042 4.26503 4.46267 4.54098 4.88822 5.07337 5.19440 5.26105 5.31834 5.41157 5.49899 5.66583 5.82653 5.96244 6.07177 6.19301 6.34802 6.45264 6.49399 6.55050 6.59803 6.83054 7.09297 7.11067 7.97343 8.18858 8.37600 8.79388 8.87442 10.14850 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.004403 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.924093 B = 6357.225971 C = 6769.923944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.240 3.760 3 C 0.224 3.776 4 N -0.795 5.795 5 C -0.246 4.246 6 H 0.129 0.871 7 C 0.032 3.968 8 N -0.832 5.832 9 Si 0.938 3.062 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.267 1.267 13 S 2.535 3.465 14 O -0.974 6.974 15 O -0.988 6.988 16 C -0.664 4.664 17 C -0.001 4.001 18 C -0.149 4.149 19 C -0.049 4.049 20 C -0.050 4.050 21 C 0.232 3.768 22 N -0.262 5.262 23 N -0.052 5.052 24 N -0.233 5.233 25 H 0.473 0.527 26 N -0.302 5.302 27 C 0.017 3.983 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.283 0.717 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 -4.324 5.758 8.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.080 4.080 3 C 0.094 3.906 4 N -0.618 5.618 5 C -0.394 4.394 6 H 0.146 0.854 7 C -0.181 4.181 8 N -0.471 5.471 9 Si 0.762 3.238 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.192 1.192 13 S 2.633 3.367 14 O -0.964 6.964 15 O -0.978 6.978 16 C -0.741 4.741 17 C -0.021 4.021 18 C -0.167 4.167 19 C -0.069 4.069 20 C -0.054 4.054 21 C -0.047 4.047 22 N -0.135 5.135 23 N -0.047 5.047 24 N -0.078 5.078 25 H 0.327 0.673 26 N -0.153 5.153 27 C -0.004 4.004 28 H 0.150 0.850 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.624 -5.477 5.628 9.659 hybrid contribution -0.994 1.098 0.576 1.589 sum -6.618 -4.379 6.204 10.073 Atomic orbital electron populations 1.80874 1.13690 1.12575 1.08113 1.29464 0.95591 0.89856 0.93055 1.19020 0.81283 1.00121 0.90155 1.55426 1.71669 1.16909 1.17795 1.20188 1.30905 0.80873 1.07398 0.85359 1.25617 0.94799 1.00571 0.97082 1.69945 1.20807 1.38192 1.18144 0.85786 0.79812 0.79591 0.78597 1.18867 1.20617 1.19226 1.11371 0.78155 0.74052 0.73149 1.93378 1.61620 1.72946 1.68445 1.93384 1.85437 1.41665 1.77294 1.32524 1.26444 1.02420 1.12729 1.21083 0.95234 0.95216 0.90594 1.21171 0.95200 0.98924 1.01418 1.21205 0.98503 0.92735 0.94489 1.17311 0.93708 0.94196 1.00206 1.23707 0.92220 0.97315 0.91508 1.76156 1.14281 1.03848 1.19198 1.78901 0.98678 1.19936 1.07182 1.47673 1.20585 1.18846 1.20712 0.67348 1.74878 1.10752 1.05798 1.23909 1.20849 0.89864 0.94157 0.95545 0.84972 0.87811 0.90561 0.84200 0.85126 0.85232 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.28 18.54 42.15 0.78 -10.50 16 2 C 0.24 5.30 13.29 -20.76 -0.28 5.02 16 3 C 0.22 4.44 5.45 -6.83 -0.04 4.41 16 4 N -0.80 -16.89 2.88 -62.77 -0.18 -17.07 16 5 C -0.25 -5.35 9.47 -15.06 -0.14 -5.49 16 6 H 0.13 2.72 7.22 -52.49 -0.38 2.34 16 7 C 0.03 0.67 4.91 -17.43 -0.09 0.59 16 8 N -0.83 -18.47 8.99 55.49 0.50 -17.97 16 9 Si 0.94 16.91 29.62 -169.99 -5.04 11.87 16 10 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 11 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 12 H -0.27 -4.84 7.11 56.52 0.40 -4.43 16 13 S 2.54 53.98 5.65 -107.50 -0.61 53.37 16 14 O -0.97 -22.23 16.05 -57.17 -0.92 -23.15 16 15 O -0.99 -22.07 15.84 -57.17 -0.91 -22.98 16 16 C -0.66 -13.25 5.97 -39.63 -0.24 -13.48 16 17 C 0.00 -0.03 9.52 -39.52 -0.38 -0.40 16 18 C -0.15 -2.28 10.03 -39.63 -0.40 -2.68 16 19 C -0.05 -0.77 9.70 -39.27 -0.38 -1.15 16 20 C -0.05 -0.91 5.88 -104.89 -0.62 -1.52 16 21 C 0.23 3.99 7.94 -156.30 -1.24 2.75 16 22 N -0.26 -4.66 12.23 32.16 0.39 -4.27 16 23 N -0.05 -0.75 13.47 60.35 0.81 0.06 16 24 N -0.23 -2.61 7.90 60.35 0.48 -2.14 16 25 H 0.47 2.66 8.96 -340.37 -3.05 -0.39 16 26 N -0.30 -4.28 12.08 32.17 0.39 -3.89 16 27 C 0.02 0.34 9.17 -39.26 -0.36 -0.02 16 28 H 0.13 2.52 6.47 -51.93 -0.34 2.18 16 29 H 0.10 1.82 6.95 -51.93 -0.36 1.46 16 30 H 0.28 6.06 8.31 -40.82 -0.34 5.72 16 31 H 0.14 2.33 7.61 -52.49 -0.40 1.93 16 32 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.13 1.70 7.88 -52.49 -0.41 1.29 16 34 H 0.14 2.85 7.44 -52.48 -0.39 2.46 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -30.66 324.81 -8.44 -39.10 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.89 Total: 4.66 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -4.15 Total: -11.98 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 3.17 Total: -55.78 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -1.82 Total: -46.13 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.04 Total: 11.87 kcal Atomic # 16 Polarization: 53.98 SS G_CDS: -0.61 Total: 53.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.66 -8.44 -39.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737692818.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.739 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds