Wall clock time and date at job start Tue Mar 31 2020 17:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47162 * 246.01078 * 3 2 1 5 5 C 1.36930 * 120.00132 * 273.33693 * 4 3 2 6 6 H 1.08001 * 120.00493 * 187.23981 * 5 4 3 7 7 C 1.38813 * 119.99898 * 7.23869 * 5 4 3 8 8 N 1.31617 * 120.00384 * 25.59188 * 7 5 4 9 9 Si 1.86806 * 120.00181 * 205.59189 * 7 5 4 10 10 H 1.48503 * 109.47018 * 59.99959 * 9 7 5 11 11 H 1.48492 * 109.47551 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47225 * 300.00572 * 9 7 5 13 13 S 1.65596 * 119.99848 * 93.33761 * 4 3 2 14 14 O 1.42105 * 106.40462 * 156.46142 * 13 4 3 15 15 O 1.42098 * 106.40383 * 23.54160 * 13 4 3 16 16 C 1.76204 * 107.21841 * 270.00015 * 13 4 3 17 17 C 1.38337 * 119.93767 * 270.02264 * 16 13 4 18 18 C 1.38300 * 120.23155 * 179.97438 * 17 16 13 19 19 C 1.38044 * 120.11812 * 0.02562 * 18 17 16 20 20 C 1.39280 * 119.88465 * 359.97438 * 19 18 17 21 21 C 1.48461 * 120.11975 * 180.02562 * 20 19 18 22 22 N 1.34050 * 126.67290 * 179.68620 * 21 20 19 23 23 N 1.28988 * 107.26528 * 179.83741 * 22 21 20 24 24 N 1.28730 * 108.94396 * 0.43544 * 23 22 21 25 25 H 0.97001 * 125.34250 * 179.74604 * 24 23 22 26 26 N 1.28867 * 109.31922 * 359.72107 * 24 23 22 27 27 C 1.38002 * 119.94025 * 90.00028 * 16 13 4 28 28 H 1.09002 * 109.47289 * 126.01434 * 3 2 1 29 29 H 1.09003 * 109.47452 * 6.01117 * 3 2 1 30 30 H 0.97001 * 120.00515 * 179.97438 * 8 7 5 31 31 H 1.07989 * 119.88458 * 0.02562 * 17 16 13 32 32 H 1.07996 * 119.94005 * 180.02562 * 18 17 16 33 33 H 1.08002 * 120.05938 * 180.27481 * 19 18 17 34 34 H 1.08006 * 120.06282 * 0.02562 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0960 0.5624 1.2619 5 6 3.2586 1.9159 1.3914 6 1 3.7270 2.3214 2.2760 7 6 2.8213 2.7668 0.3856 8 7 1.8460 2.3928 -0.4152 9 14 3.6171 4.4429 0.1685 10 1 5.0653 4.2707 -0.1116 11 1 2.9748 5.1525 -0.9668 12 1 3.4444 5.2375 1.4110 13 16 3.4512 -0.4394 2.5317 14 8 4.3757 0.2632 3.3509 15 8 3.7237 -1.7164 1.9713 16 6 1.9789 -0.6175 3.4832 17 6 1.7145 0.2625 4.5174 18 6 0.5605 0.1287 5.2678 19 6 -0.3337 -0.8851 4.9884 20 6 -0.0725 -1.7739 3.9483 21 6 -1.0309 -2.8658 3.6429 22 7 -0.9147 -3.7854 2.6746 23 7 -1.9508 -4.5504 2.7469 24 7 -2.7054 -4.1424 3.7067 25 1 -3.5487 -4.5446 3.9672 26 7 -2.1644 -3.1160 4.2675 27 6 1.0914 -1.6342 3.1952 28 1 2.9710 0.6051 -0.8312 29 1 2.9718 -1.0212 -0.1076 30 1 1.5402 2.9875 -1.1178 31 1 2.4113 1.0573 4.7390 32 1 0.3586 0.8186 6.0738 33 1 -1.2368 -0.9861 5.5721 34 1 1.2987 -2.3208 2.3876 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737692818.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:05 Heat of formation + Delta-G solvation = 104.952416 kcal Electronic energy + Delta-G solvation = -26213.732525 eV Core-core repulsion = 22277.094869 eV Total energy + Delta-G solvation = -3936.637655 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -45.56415 -40.14692 -38.42787 -37.81483 -36.40761 -36.22952 -35.54633 -34.73385 -33.46200 -32.20617 -31.62957 -29.20259 -25.96676 -25.83286 -25.64606 -23.79378 -22.87939 -20.48000 -20.23913 -19.77505 -18.95291 -18.39088 -18.24030 -17.82593 -16.93293 -16.69375 -16.27258 -16.08763 -15.84231 -15.29908 -15.07223 -14.76452 -14.64008 -14.24731 -14.04120 -13.55398 -13.49382 -13.23278 -13.19027 -13.16109 -12.79837 -12.72603 -12.52795 -12.52085 -12.43993 -12.31212 -12.18998 -12.12482 -11.99966 -11.80779 -11.61445 -11.24720 -10.32257 -10.15691 -9.81618 -8.44624 -5.84934 -0.46466 -0.23306 0.02676 0.11647 1.15797 1.33637 1.57863 1.64839 1.73138 1.96837 2.34270 2.42124 2.51483 2.55245 2.80711 2.91419 3.05436 3.22009 3.63646 3.70514 3.88157 3.97464 4.00488 4.25070 4.35315 4.42884 4.51699 4.64799 4.83745 4.86959 5.11945 5.19805 5.23346 5.25115 5.46511 5.54728 5.78560 6.32758 6.75043 7.00940 7.12779 7.15412 8.54325 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.004403 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.924093 B = 6357.225971 C = 6769.923944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.253 3.747 3 C 0.222 3.778 4 N -0.805 5.805 5 C -0.271 4.271 6 H 0.128 0.872 7 C 0.007 3.993 8 N -0.859 5.859 9 Si 0.993 3.007 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.266 1.266 13 S 2.557 3.443 14 O -0.992 6.992 15 O -1.004 7.004 16 C -0.684 4.684 17 C -0.017 4.017 18 C -0.136 4.136 19 C -0.041 4.041 20 C -0.060 4.060 21 C 0.212 3.788 22 N -0.301 5.301 23 N -0.054 5.054 24 N -0.196 5.196 25 H 0.496 0.504 26 N -0.287 5.287 27 C -0.004 4.004 28 H 0.141 0.859 29 H 0.124 0.876 30 H 0.282 0.718 31 H 0.148 0.852 32 H 0.175 0.825 33 H 0.162 0.838 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 -3.944 7.376 10.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.065 4.065 3 C 0.093 3.907 4 N -0.628 5.628 5 C -0.417 4.417 6 H 0.146 0.854 7 C -0.203 4.203 8 N -0.498 5.498 9 Si 0.816 3.184 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.191 1.191 13 S 2.657 3.343 14 O -0.982 6.982 15 O -0.994 6.994 16 C -0.764 4.764 17 C -0.037 4.037 18 C -0.154 4.154 19 C -0.061 4.061 20 C -0.064 4.064 21 C -0.068 4.068 22 N -0.172 5.172 23 N -0.049 5.049 24 N -0.047 5.047 25 H 0.356 0.644 26 N -0.140 5.140 27 C -0.025 4.025 28 H 0.159 0.841 29 H 0.142 0.858 30 H 0.093 0.907 31 H 0.165 0.835 32 H 0.192 0.808 33 H 0.180 0.820 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.788 -5.098 7.218 11.143 hybrid contribution -0.779 0.813 0.231 1.150 sum -7.567 -4.285 7.449 11.450 Atomic orbital electron populations 1.80851 1.14754 1.13939 1.09315 1.29874 0.95982 0.88711 0.91954 1.19246 0.80053 1.01339 0.90074 1.55219 1.72506 1.16845 1.18230 1.20323 1.32258 0.81085 1.08009 0.85444 1.26219 0.94650 1.02963 0.96420 1.70005 1.21846 1.39178 1.18803 0.84958 0.79059 0.76201 0.78196 1.18393 1.20874 1.19109 1.10047 0.77855 0.73394 0.73029 1.93352 1.62529 1.73345 1.68938 1.93360 1.85893 1.42316 1.77819 1.32138 1.25939 1.04051 1.14278 1.21350 0.96717 0.95082 0.90581 1.21630 0.93488 0.98917 1.01335 1.21621 0.99400 0.91595 0.93475 1.17513 0.93313 0.95012 1.00529 1.23660 0.93176 0.97712 0.92279 1.76144 1.15815 1.04883 1.20401 1.78836 0.98532 1.19649 1.07871 1.47750 1.20653 1.17377 1.18953 0.64417 1.74816 1.09668 1.06128 1.23360 1.20761 0.91188 0.94394 0.96162 0.84146 0.85838 0.90695 0.83463 0.80801 0.82049 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.64 18.54 20.00 0.37 -24.27 16 2 C 0.25 11.38 13.29 89.44 1.19 12.57 16 3 C 0.22 8.94 5.45 84.57 0.46 9.40 16 4 N -0.80 -34.55 2.88 -352.51 -1.02 -35.57 16 5 C -0.27 -11.84 9.47 84.03 0.80 -11.04 16 6 H 0.13 5.44 7.22 -2.91 -0.02 5.42 16 7 C 0.01 0.30 4.91 84.86 0.42 0.71 16 8 N -0.86 -38.33 8.99 21.65 0.19 -38.14 16 9 Si 0.99 34.22 29.62 68.60 2.03 36.25 16 10 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 11 H -0.28 -9.79 7.11 99.48 0.71 -9.09 16 12 H -0.27 -9.06 7.11 99.48 0.71 -8.36 16 13 S 2.56 110.16 5.65 -56.49 -0.32 109.84 16 14 O -0.99 -45.50 16.05 -128.00 -2.05 -47.56 16 15 O -1.00 -45.65 15.84 -128.00 -2.03 -47.68 16 16 C -0.68 -27.32 5.97 22.24 0.13 -27.19 16 17 C -0.02 -0.60 9.52 22.31 0.21 -0.39 16 18 C -0.14 -3.75 10.03 22.24 0.22 -3.52 16 19 C -0.04 -1.17 9.70 22.47 0.22 -0.95 16 20 C -0.06 -2.10 5.88 -20.04 -0.12 -2.21 16 21 C 0.21 7.04 7.94 137.38 1.09 8.13 16 22 N -0.30 -10.60 12.23 -52.18 -0.64 -11.24 16 23 N -0.05 -1.50 13.47 37.02 0.50 -1.00 16 24 N -0.20 -3.91 7.90 37.02 0.29 -3.62 16 25 H 0.50 4.01 8.96 -347.54 -3.12 0.90 16 26 N -0.29 -7.43 12.08 -52.13 -0.63 -8.06 16 27 C 0.00 -0.14 9.17 22.48 0.21 0.06 16 28 H 0.14 5.41 6.47 -2.39 -0.02 5.40 16 29 H 0.12 4.40 6.95 -2.39 -0.02 4.38 16 30 H 0.28 12.16 8.31 -92.71 -0.77 11.38 16 31 H 0.15 4.75 7.61 -2.92 -0.02 4.73 16 32 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.16 3.55 7.88 -2.91 -0.02 3.52 16 34 H 0.13 5.27 7.44 -2.91 -0.02 5.25 16 Total: -1.00 -66.29 324.81 -0.38 -66.67 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -1.91 Total: 18.80 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 4.83 Total: -14.43 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -0.93 Total: -121.89 kcal Atomic # 8 Polarization: -91.15 SS G_CDS: -4.08 Total: -95.24 kcal Atomic # 14 Polarization: 34.22 SS G_CDS: 2.03 Total: 36.25 kcal Atomic # 16 Polarization: 110.16 SS G_CDS: -0.32 Total: 109.84 kcal Total: -66.29 -0.38 -66.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737692818.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.620 kcal (2) G-P(sol) polarization free energy of solvation -66.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds