Wall clock time and date at job start Tue Mar 31 2020 18:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99521 * 2 1 4 4 H 1.48505 * 109.47098 * 269.99863 * 3 2 1 5 5 H 1.48500 * 109.47583 * 30.00148 * 3 2 1 6 6 H 1.48503 * 109.47035 * 150.00126 * 3 2 1 7 7 C 1.38942 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00251 * 179.97438 * 7 2 1 9 9 N 1.37104 * 120.00306 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00348 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99794 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00047 * 180.02562 * 10 9 7 13 13 O 1.45192 * 109.47099 * 180.02562 * 12 10 9 14 14 C 1.34730 * 116.99996 * 180.02562 * 13 12 10 15 15 O 1.21458 * 119.99767 * 359.97438 * 14 13 12 16 16 C 1.47775 * 119.99765 * 180.02562 * 14 13 12 17 17 C 1.38866 * 121.36800 * 354.34310 * 16 14 13 18 18 C 1.39916 * 119.43436 * 179.97438 * 17 16 14 19 19 O 1.35609 * 118.80118 * 180.02562 * 18 17 16 20 20 N 1.31238 * 122.40026 * 359.96435 * 18 17 16 21 21 C 1.33570 * 122.36616 * 0.08417 * 20 18 17 22 22 C 1.40664 * 121.07743 * 179.91439 * 21 20 18 23 23 C 1.36073 * 119.75832 * 179.97438 * 22 21 20 24 24 C 1.39536 * 121.05566 * 359.97438 * 23 22 21 25 25 F 1.35102 * 119.62507 * 180.02562 * 24 23 22 26 26 C 1.36554 * 120.74862 * 0.02562 * 24 23 22 27 27 C 1.39881 * 119.57000 * 359.97438 * 26 24 23 28 28 H 0.96991 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99308 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47151 * 59.99707 * 12 10 9 31 31 H 1.09005 * 109.46884 * 300.00083 * 12 10 9 32 32 H 1.08000 * 120.28350 * 0.02562 * 17 16 14 33 33 H 0.96698 * 114.00124 * 90.00176 * 19 18 17 34 34 H 1.08002 * 120.12223 * 359.95683 * 22 21 20 35 35 H 1.07995 * 119.47404 * 180.02562 * 23 22 21 36 36 H 1.07993 * 120.21627 * 179.69976 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3236 -2.3907 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2441 -4.8630 0.0000 13 8 2.1876 -5.9665 0.0007 14 6 1.6728 -7.2115 -0.0003 15 8 0.4687 -7.3707 -0.0012 16 6 2.5731 -8.3833 0.0010 17 6 3.9493 -8.2377 -0.1138 18 6 4.7640 -9.3751 -0.1075 19 8 6.1063 -9.2180 -0.2198 20 7 4.2767 -10.5885 0.0043 21 6 2.9672 -10.8255 0.1186 22 6 2.4742 -12.1377 0.2351 23 6 1.1348 -12.3482 0.3506 24 6 0.2362 -11.2807 0.3561 25 9 -1.0878 -11.5229 0.4728 26 6 0.6799 -9.9941 0.2449 27 6 2.0510 -9.7446 0.1247 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6177 -4.9205 -0.8903 31 1 0.6170 -4.9209 0.8897 32 1 4.3871 -7.2547 -0.2063 33 1 6.5630 -9.1193 0.6269 34 1 3.1562 -12.9752 0.2327 35 1 0.7613 -13.3575 0.4402 36 1 -0.0236 -9.1746 0.2453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738817779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:31 Heat of formation + Delta-G solvation = -136.223919 kcal Electronic energy + Delta-G solvation = -26893.605131 eV Core-core repulsion = 22451.543701 eV Total energy + Delta-G solvation = -4442.061430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.084 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.23072 -41.44631 -40.22376 -38.63463 -38.21986 -36.39411 -36.01235 -34.08560 -33.85888 -31.46524 -30.91806 -29.77555 -28.58794 -25.72299 -24.61987 -23.90056 -23.44162 -21.41335 -19.71149 -19.64235 -18.66751 -18.23895 -18.00680 -17.68509 -16.90208 -16.57762 -16.38502 -16.01234 -15.93292 -15.64030 -15.44423 -14.81508 -14.54616 -14.30989 -14.08457 -13.97949 -13.86158 -13.58331 -13.15466 -12.95116 -12.50841 -12.18930 -12.14889 -11.85344 -11.67462 -11.56014 -11.18812 -10.93149 -10.88145 -10.62677 -10.48760 -10.35692 -9.87273 -9.67079 -9.21827 -8.62397 -8.61218 -8.15371 -6.56147 -3.98580 -0.50410 0.20489 1.08590 2.05330 2.25981 2.52035 3.05829 3.08900 3.20067 3.25542 3.50418 3.65077 3.71825 3.91257 3.99966 4.15226 4.21680 4.39131 4.61270 4.68292 4.82786 5.01643 5.07439 5.08100 5.08858 5.38434 5.49820 5.56543 5.56631 5.67819 5.69105 5.83851 5.96523 6.25735 6.44249 7.04823 7.36726 7.42032 7.51200 7.86845 8.40406 9.00355 9.31523 9.80535 10.60889 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.002468 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.835716 B =11341.503937 C =12877.587306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.550 5.550 10 C 0.437 3.563 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.314 6.314 14 C 0.511 3.489 15 O -0.494 6.494 16 C -0.050 4.050 17 C -0.100 4.100 18 C 0.341 3.659 19 O -0.476 6.476 20 N -0.471 5.471 21 C 0.133 3.867 22 C -0.059 4.059 23 C -0.131 4.131 24 C 0.109 3.891 25 F -0.132 7.132 26 C -0.137 4.137 27 C -0.048 4.048 28 H 0.275 0.725 29 H 0.395 0.605 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.408 0.592 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 -22.482 1.911 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.433 4.433 8 H 0.125 0.875 9 N -0.187 5.187 10 C 0.221 3.779 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.228 6.228 14 C 0.354 3.646 15 O -0.384 6.384 16 C -0.059 4.059 17 C -0.121 4.121 18 C 0.146 3.854 19 O -0.283 6.283 20 N -0.191 5.191 21 C 0.012 3.988 22 C -0.078 4.078 23 C -0.151 4.151 24 C 0.089 3.911 25 F -0.111 7.111 26 C -0.156 4.156 27 C -0.050 4.050 28 H 0.085 0.915 29 H 0.229 0.771 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.189 0.811 33 H 0.267 0.733 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.412 -23.090 1.337 23.379 hybrid contribution -1.001 1.580 0.432 1.920 sum 2.411 -21.511 1.769 21.717 Atomic orbital electron populations 1.69608 1.06028 1.28617 1.49354 1.25325 0.95695 0.99934 0.96736 0.85790 0.79237 0.80331 0.78558 1.20201 1.20769 1.19236 1.19727 0.93499 0.81665 1.48361 0.87541 1.41698 1.09413 1.04059 1.63510 1.19229 0.88326 0.83955 0.86368 1.90565 1.13316 1.86708 1.55452 1.22885 0.90711 0.84076 1.03959 1.86584 1.40196 1.13515 1.82536 1.20728 0.86673 0.83649 0.73501 1.90703 1.15806 1.86235 1.45662 1.20272 0.92604 0.90259 1.02792 1.22879 0.92494 1.01699 0.95073 1.19055 0.85382 0.86869 0.94084 1.84792 1.14352 1.93844 1.35328 1.66954 1.15080 1.24795 1.12261 1.18368 0.86824 0.93283 1.00307 1.20654 0.94674 0.94942 0.97532 1.20975 0.92881 0.99406 1.01837 1.17496 0.78069 0.93650 1.01860 1.91542 1.31270 1.95140 1.93104 1.21696 0.96005 0.97577 1.00333 1.19190 0.93936 0.91282 1.00585 0.91534 0.77109 0.89066 0.89083 0.81062 0.73307 0.83093 0.83571 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.50 13.05 55.50 0.72 -22.77 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.23 29.55 -169.99 -5.02 15.21 16 4 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.38 5.29 -10.96 -0.06 -13.44 16 10 C 0.44 10.00 7.86 -10.99 -0.09 9.92 16 11 O -0.58 -15.23 16.08 -14.11 -0.23 -15.46 16 12 C 0.06 1.08 5.95 36.01 0.21 1.29 16 13 O -0.31 -5.39 9.14 -47.25 -0.43 -5.82 16 14 C 0.51 7.68 7.90 34.63 0.27 7.95 16 15 O -0.49 -7.84 13.50 -19.23 -0.26 -8.10 16 16 C -0.05 -0.65 6.08 -102.52 -0.62 -1.27 16 17 C -0.10 -1.15 9.62 -38.72 -0.37 -1.52 16 18 C 0.34 3.70 7.69 -17.18 -0.13 3.57 16 19 O -0.48 -4.28 13.53 -18.52 -0.25 -4.53 16 20 N -0.47 -5.40 10.28 -11.13 -0.11 -5.51 16 21 C 0.13 1.47 6.62 -84.88 -0.56 0.91 16 22 C -0.06 -0.50 9.99 -39.44 -0.39 -0.89 16 23 C -0.13 -1.03 9.92 -39.88 -0.40 -1.42 16 24 C 0.11 1.12 7.25 -39.71 -0.29 0.83 16 25 F -0.13 -1.44 17.25 2.25 0.04 -1.40 16 26 C -0.14 -1.63 9.27 -39.57 -0.37 -2.00 16 27 C -0.05 -0.58 5.90 -104.72 -0.62 -1.19 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 29 H 0.40 9.11 7.90 -40.82 -0.32 8.78 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.17 1.93 7.72 -52.49 -0.41 1.52 16 33 H 0.41 1.55 9.06 45.56 0.41 1.96 16 34 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.18 2.30 5.16 -52.49 -0.27 2.03 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -32.66 335.90 -5.92 -38.58 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -1.79 Total: 9.72 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -3.59 Total: 8.46 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.55 Total: -41.72 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -1.17 Total: -33.91 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.66 -5.92 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738817779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.647 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds