Wall clock time and date at job start Tue Mar 31 2020 18:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31326 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48500 * 109.47080 * 239.99449 * 3 2 1 5 5 H 1.48500 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47054 * 120.00131 * 3 2 1 7 7 C 1.39113 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99677 * 185.53587 * 7 2 1 9 9 N 1.36783 * 119.99735 * 5.53447 * 7 2 1 10 10 C 1.46500 * 120.00210 * 32.89706 * 9 7 2 11 11 C 1.50702 * 109.46966 * 263.02343 * 10 9 7 12 12 O 1.20831 * 120.00090 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00297 * 179.97438 * 11 10 9 14 14 C 1.34775 * 119.99593 * 212.88917 * 9 7 2 15 15 O 1.21550 * 119.99685 * 184.85202 * 14 9 7 16 16 C 1.48181 * 120.00361 * 4.85730 * 14 9 7 17 17 C 1.41959 * 126.85391 * 175.70354 * 16 14 9 18 18 C 1.36713 * 103.81587 * 180.11255 * 17 16 14 19 19 C 1.47805 * 126.80761 * 179.97438 * 18 17 16 20 20 C 1.39572 * 120.16180 * 309.43696 * 19 18 17 21 21 C 1.37926 * 119.88218 * 180.25252 * 20 19 18 22 22 C 1.38397 * 120.20057 * 0.02562 * 21 20 19 23 23 C 1.38270 * 120.32091 * 0.02562 * 22 21 20 24 24 C 1.38245 * 120.11996 * 359.97438 * 23 22 21 25 25 F 1.35092 * 120.10590 * 180.02562 * 24 23 22 26 26 O 1.34482 * 106.38542 * 359.66718 * 18 17 16 27 27 N 1.20881 * 111.74814 * 0.22590 * 26 18 17 28 28 H 0.97002 * 120.00019 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47193 * 23.02430 * 10 9 7 30 30 H 1.08994 * 109.47130 * 143.02572 * 10 9 7 31 31 H 0.96702 * 117.00087 * 180.02562 * 13 11 10 32 32 H 1.07997 * 128.09199 * 0.02562 * 17 16 14 33 33 H 1.08007 * 120.05887 * 0.27598 * 20 19 18 34 34 H 1.07999 * 119.89831 * 180.02562 * 21 20 19 35 35 H 1.08001 * 119.84075 * 180.02562 * 22 21 20 36 36 H 1.08001 * 119.94125 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 3.1010 1.6964 -1.2124 5 1 1.2821 2.7465 0.0006 6 1 3.1010 1.6965 1.2126 7 6 2.0088 -1.2048 0.0005 8 1 3.0850 -1.2068 0.0908 9 7 1.3296 -2.3866 -0.1132 10 6 0.1031 -2.4527 -0.9116 11 6 -1.0937 -2.3158 -0.0060 12 8 -0.9380 -2.1767 1.1842 13 8 -2.3326 -2.3472 -0.5216 14 6 1.7890 -3.4903 0.5092 15 8 1.2364 -4.5592 0.3374 16 6 2.9676 -3.4007 1.4029 17 6 3.5190 -4.4440 2.1919 18 6 4.5773 -3.8516 2.8229 19 6 5.5107 -4.4895 3.7751 20 6 5.0178 -5.2133 4.8619 21 6 5.8940 -5.8018 5.7498 22 6 7.2600 -5.6762 5.5665 23 6 7.7574 -4.9602 4.4933 24 6 6.8912 -4.3649 3.5952 25 9 7.3775 -3.6658 2.5465 26 8 4.6050 -2.5752 2.4002 27 7 3.7124 -2.3427 1.6189 28 1 -0.4850 0.8401 0.0004 29 1 0.1008 -1.6434 -1.6417 30 1 0.0584 -3.4102 -1.4303 31 1 -3.0688 -2.2551 0.0987 32 1 3.1808 -5.4662 2.2754 33 1 3.9522 -5.3127 5.0071 34 1 5.5128 -6.3623 6.5906 35 1 7.9408 -6.1398 6.2651 36 1 8.8245 -4.8657 4.3564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:11 Heat of formation + Delta-G solvation = -56.891587 kcal Electronic energy + Delta-G solvation = -28235.122855 eV Core-core repulsion = 23796.501533 eV Total energy + Delta-G solvation = -4438.621322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.97288 -44.31465 -39.33823 -39.08578 -38.04317 -35.24675 -34.54151 -33.55292 -32.84837 -31.67672 -30.84731 -29.44610 -28.03071 -25.18197 -23.82985 -23.64115 -22.64603 -21.78459 -20.69590 -19.35012 -18.45791 -17.48022 -17.19626 -16.96171 -16.41264 -16.35870 -16.21257 -15.68214 -15.58424 -15.28482 -14.61447 -14.47099 -14.38407 -14.25916 -13.68135 -13.38658 -13.34767 -13.17296 -12.83490 -12.57196 -12.16674 -11.91296 -11.63097 -11.52984 -11.37417 -11.23870 -11.02737 -10.49904 -10.33443 -10.22946 -9.83851 -9.65725 -9.49323 -9.14423 -9.09133 -9.01070 -8.53031 -7.93503 -6.57746 -4.17046 0.63192 0.94896 1.88227 2.26753 3.14149 3.16819 3.18302 3.22003 3.49736 3.67452 3.76565 4.00514 4.10303 4.27553 4.45467 4.51539 4.59363 4.79737 4.92290 4.94941 5.05849 5.13633 5.50649 5.56742 5.68269 5.79310 5.88814 5.97057 6.04529 6.12030 6.21430 6.41107 6.49228 6.58112 6.61030 7.38543 7.49515 7.63768 8.24325 8.68136 8.92040 9.16089 9.24102 9.58966 10.49595 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.003612 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.176839 B = 7749.055837 C = 8883.701732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.045 3.955 3 Si 0.933 3.067 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.329 4.329 8 H 0.120 0.880 9 N -0.403 5.403 10 C 0.158 3.842 11 C 0.500 3.500 12 O -0.503 6.503 13 O -0.536 6.536 14 C 0.535 3.465 15 O -0.592 6.592 16 C 0.011 3.989 17 C -0.158 4.158 18 C -0.034 4.034 19 C -0.041 4.041 20 C -0.063 4.063 21 C -0.130 4.130 22 C -0.084 4.084 23 C -0.156 4.156 24 C 0.124 3.876 25 F -0.127 7.127 26 O 0.115 5.885 27 N -0.296 5.296 28 H 0.276 0.724 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.391 0.609 32 H 0.175 0.825 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.963 -8.036 7.726 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.161 4.161 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.458 4.458 8 H 0.137 0.863 9 N -0.121 5.121 10 C 0.033 3.967 11 C 0.340 3.660 12 O -0.387 6.387 13 O -0.347 6.347 14 C 0.324 3.676 15 O -0.478 6.478 16 C -0.147 4.147 17 C -0.180 4.180 18 C -0.096 4.096 19 C -0.044 4.044 20 C -0.081 4.081 21 C -0.148 4.148 22 C -0.102 4.102 23 C -0.175 4.175 24 C 0.104 3.896 25 F -0.105 7.105 26 O 0.040 5.960 27 N 0.003 4.997 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.247 0.753 32 H 0.193 0.807 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.838 -7.122 7.131 14.084 hybrid contribution -0.330 0.551 0.514 0.822 sum 9.508 -6.571 7.646 13.858 Atomic orbital electron populations 1.69571 1.06378 1.28473 1.45822 1.25506 0.95371 1.00431 0.94835 0.85874 0.78977 0.79709 0.79534 1.19476 1.20824 1.19224 1.20101 0.93075 0.81814 1.50823 0.86311 1.43130 1.20211 1.08865 1.39878 1.20397 0.81116 1.03045 0.92185 1.23375 0.83017 0.70896 0.88731 1.90567 1.85667 1.44571 1.17923 1.84500 1.17299 1.86704 1.46246 1.16933 0.83918 0.85090 0.81681 1.90635 1.61553 1.28985 1.66596 1.23264 0.99464 0.89327 1.02598 1.22529 0.95489 1.01415 0.98561 1.22036 0.99328 0.86378 1.01891 1.17685 0.89327 1.01438 0.95909 1.21196 1.01056 0.94560 0.91300 1.21136 0.93078 1.00733 0.99899 1.21133 0.95683 0.96886 0.96481 1.21096 1.00220 1.00548 0.95592 1.17813 0.90963 0.94461 0.86372 1.91555 1.88108 1.76221 1.54655 1.85047 1.40446 1.26076 1.44416 1.74647 0.98604 1.21628 1.04836 0.91375 0.86281 0.89563 0.75257 0.80749 0.84162 0.84688 0.84745 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.77 8.71 55.50 0.48 -22.29 16 2 C 0.05 1.17 5.16 -17.44 -0.09 1.08 16 3 Si 0.93 20.43 29.56 -169.99 -5.02 15.40 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.33 -8.69 8.25 -15.02 -0.12 -8.82 16 8 H 0.12 3.12 5.60 -52.49 -0.29 2.83 16 9 N -0.40 -10.57 2.15 -117.06 -0.25 -10.82 16 10 C 0.16 3.78 5.17 -5.19 -0.03 3.75 16 11 C 0.50 12.20 6.35 36.01 0.23 12.43 16 12 O -0.50 -14.10 16.12 -18.75 -0.30 -14.40 16 13 O -0.54 -10.67 13.42 -39.26 -0.53 -11.20 16 14 C 0.53 13.96 7.39 -12.18 -0.09 13.87 16 15 O -0.59 -15.94 16.62 5.32 0.09 -15.85 16 16 C 0.01 0.26 6.90 -82.64 -0.57 -0.31 16 17 C -0.16 -3.00 10.89 -38.71 -0.42 -3.42 16 18 C -0.03 -0.58 6.51 -36.22 -0.24 -0.82 16 19 C -0.04 -0.56 5.82 -104.91 -0.61 -1.17 16 20 C -0.06 -0.66 9.73 -39.20 -0.38 -1.04 16 21 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 22 C -0.08 -0.62 10.04 -39.51 -0.40 -1.01 16 23 C -0.16 -1.43 10.01 -39.57 -0.40 -1.83 16 24 C 0.12 1.57 7.29 -39.01 -0.28 1.28 16 25 F -0.13 -1.86 16.82 2.25 0.04 -1.83 16 26 O 0.11 2.32 11.20 16.00 0.18 2.50 16 27 N -0.30 -6.87 8.85 33.35 0.29 -6.57 16 28 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.12 2.78 7.03 -51.93 -0.36 2.41 16 30 H 0.09 1.90 7.57 -51.93 -0.39 1.51 16 31 H 0.39 6.06 9.10 45.56 0.41 6.48 16 32 H 0.18 2.89 8.06 -52.49 -0.42 2.46 16 33 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -34.13 332.19 -5.70 -39.83 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -1.89 Total: 7.67 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: -3.80 Total: 12.55 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.53 Total: -39.68 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.56 Total: -38.95 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.13 -5.70 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.063 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds