Wall clock time and date at job start Tue Mar 31 2020 18:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31326 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48500 * 109.47080 * 239.99449 * 3 2 1 5 5 H 1.48500 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47054 * 120.00131 * 3 2 1 7 7 C 1.39113 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99677 * 185.53587 * 7 2 1 9 9 N 1.36783 * 119.99735 * 5.53447 * 7 2 1 10 10 C 1.46500 * 120.00210 * 32.89706 * 9 7 2 11 11 C 1.50702 * 109.46966 * 263.02343 * 10 9 7 12 12 O 1.20831 * 120.00090 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00297 * 179.97438 * 11 10 9 14 14 C 1.34775 * 119.99593 * 212.88917 * 9 7 2 15 15 O 1.21550 * 119.99685 * 184.85202 * 14 9 7 16 16 C 1.48181 * 120.00361 * 4.85730 * 14 9 7 17 17 C 1.41959 * 126.85391 * 175.70354 * 16 14 9 18 18 C 1.36713 * 103.81587 * 180.11255 * 17 16 14 19 19 C 1.47805 * 126.80761 * 179.97438 * 18 17 16 20 20 C 1.39572 * 120.16180 * 309.43696 * 19 18 17 21 21 C 1.37926 * 119.88218 * 180.25252 * 20 19 18 22 22 C 1.38397 * 120.20057 * 0.02562 * 21 20 19 23 23 C 1.38270 * 120.32091 * 0.02562 * 22 21 20 24 24 C 1.38245 * 120.11996 * 359.97438 * 23 22 21 25 25 F 1.35092 * 120.10590 * 180.02562 * 24 23 22 26 26 O 1.34482 * 106.38542 * 359.66718 * 18 17 16 27 27 N 1.20881 * 111.74814 * 0.22590 * 26 18 17 28 28 H 0.97002 * 120.00019 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47193 * 23.02430 * 10 9 7 30 30 H 1.08994 * 109.47130 * 143.02572 * 10 9 7 31 31 H 0.96702 * 117.00087 * 180.02562 * 13 11 10 32 32 H 1.07997 * 128.09199 * 0.02562 * 17 16 14 33 33 H 1.08007 * 120.05887 * 0.27598 * 20 19 18 34 34 H 1.07999 * 119.89831 * 180.02562 * 21 20 19 35 35 H 1.08001 * 119.84075 * 180.02562 * 22 21 20 36 36 H 1.08001 * 119.94125 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 3.1010 1.6964 -1.2124 5 1 1.2821 2.7465 0.0006 6 1 3.1010 1.6965 1.2126 7 6 2.0088 -1.2048 0.0005 8 1 3.0850 -1.2068 0.0908 9 7 1.3296 -2.3866 -0.1132 10 6 0.1031 -2.4527 -0.9116 11 6 -1.0937 -2.3158 -0.0060 12 8 -0.9380 -2.1767 1.1842 13 8 -2.3326 -2.3472 -0.5216 14 6 1.7890 -3.4903 0.5092 15 8 1.2364 -4.5592 0.3374 16 6 2.9676 -3.4007 1.4029 17 6 3.5190 -4.4440 2.1919 18 6 4.5773 -3.8516 2.8229 19 6 5.5107 -4.4895 3.7751 20 6 5.0178 -5.2133 4.8619 21 6 5.8940 -5.8018 5.7498 22 6 7.2600 -5.6762 5.5665 23 6 7.7574 -4.9602 4.4933 24 6 6.8912 -4.3649 3.5952 25 9 7.3775 -3.6658 2.5465 26 8 4.6050 -2.5752 2.4002 27 7 3.7124 -2.3427 1.6189 28 1 -0.4850 0.8401 0.0004 29 1 0.1008 -1.6434 -1.6417 30 1 0.0584 -3.4102 -1.4303 31 1 -3.0688 -2.2551 0.0987 32 1 3.1808 -5.4662 2.2754 33 1 3.9522 -5.3127 5.0071 34 1 5.5128 -6.3623 6.5906 35 1 7.9408 -6.1398 6.2651 36 1 8.8245 -4.8657 4.3564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:10 Heat of formation + Delta-G solvation = -78.821887 kcal Electronic energy + Delta-G solvation = -28236.073824 eV Core-core repulsion = 23796.501533 eV Total energy + Delta-G solvation = -4439.572291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.97797 -45.96263 -41.26721 -39.96883 -39.86762 -37.15617 -36.46830 -35.03841 -34.23613 -33.62854 -31.61757 -30.64206 -29.89760 -27.13898 -25.36779 -24.86214 -23.59535 -23.26231 -22.40665 -21.14789 -19.89668 -18.94114 -18.75272 -18.49083 -18.13181 -17.90741 -17.48905 -17.17870 -16.69068 -16.59359 -16.42491 -16.23473 -16.04597 -15.38349 -15.31771 -14.92007 -14.66519 -14.45350 -14.21992 -13.80203 -13.52986 -13.49854 -13.31100 -13.03721 -12.85266 -12.77225 -12.23876 -12.19013 -12.12457 -12.08514 -11.50345 -11.38832 -11.12006 -11.00628 -10.95170 -9.91640 -9.91347 -9.60055 -8.52871 -6.18902 -0.32232 0.20488 0.31634 0.76302 1.37916 1.42251 1.48766 1.75775 1.90870 2.00228 2.24821 2.45207 2.60786 2.67264 2.99971 3.16827 3.23348 3.53004 3.77398 3.97515 4.08339 4.20367 4.23232 4.34003 4.38536 4.42652 4.57991 4.77892 4.82918 4.90002 5.05313 5.11654 5.31581 5.39546 5.41944 5.55703 5.86147 5.91985 6.25360 6.86089 7.07174 7.28913 7.39326 7.61778 8.53933 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.003612 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.176839 B = 7749.055837 C = 8883.701732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.008 3.992 3 Si 0.993 3.007 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.348 4.348 8 H 0.114 0.886 9 N -0.414 5.414 10 C 0.152 3.848 11 C 0.505 3.495 12 O -0.545 6.545 13 O -0.520 6.520 14 C 0.523 3.477 15 O -0.612 6.612 16 C -0.021 4.021 17 C -0.168 4.168 18 C -0.005 4.005 19 C -0.077 4.077 20 C -0.066 4.066 21 C -0.119 4.119 22 C -0.063 4.063 23 C -0.151 4.151 24 C 0.098 3.902 25 F -0.148 7.148 26 O 0.115 5.885 27 N -0.324 5.324 28 H 0.276 0.724 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.414 0.586 32 H 0.195 0.805 33 H 0.145 0.855 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.674 -9.031 9.833 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.196 4.196 3 Si 0.816 3.184 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.476 4.476 8 H 0.131 0.869 9 N -0.131 5.131 10 C 0.027 3.973 11 C 0.347 3.653 12 O -0.434 6.434 13 O -0.332 6.332 14 C 0.312 3.688 15 O -0.499 6.499 16 C -0.178 4.178 17 C -0.190 4.190 18 C -0.068 4.068 19 C -0.080 4.080 20 C -0.084 4.084 21 C -0.136 4.136 22 C -0.081 4.081 23 C -0.170 4.170 24 C 0.079 3.921 25 F -0.127 7.127 26 O 0.039 5.961 27 N -0.024 5.024 28 H 0.087 0.913 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.273 0.727 32 H 0.212 0.788 33 H 0.163 0.837 34 H 0.189 0.811 35 H 0.195 0.805 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.506 -8.112 9.201 16.819 hybrid contribution -0.790 0.711 0.019 1.063 sum 10.717 -7.401 9.220 15.958 Atomic orbital electron populations 1.69652 1.07280 1.29020 1.46148 1.26275 0.96162 1.02987 0.94176 0.84991 0.77895 0.76117 0.79425 1.18071 1.19916 1.20211 1.20231 0.93164 0.82353 1.51897 0.86850 1.43319 1.20780 1.08909 1.40108 1.20522 0.80767 1.03813 0.92150 1.23374 0.84147 0.69753 0.87990 1.90546 1.86523 1.46748 1.19560 1.84425 1.16659 1.85826 1.46326 1.17355 0.84668 0.84908 0.81828 1.90578 1.62477 1.29438 1.67439 1.23276 0.99646 0.91163 1.03678 1.22707 0.96184 1.01626 0.98470 1.22655 0.98790 0.84656 1.00713 1.17818 0.89141 1.03919 0.97085 1.21395 1.02037 0.94126 0.90868 1.21585 0.93038 0.99347 0.99650 1.21690 0.96161 0.94603 0.95642 1.21452 1.00981 0.99585 0.94948 1.18195 0.91171 0.95726 0.87028 1.91499 1.88297 1.77005 1.55893 1.84975 1.39579 1.27748 1.43817 1.74612 0.99374 1.22291 1.06146 0.91341 0.86007 0.88192 0.72704 0.78801 0.83721 0.81090 0.80459 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.11 8.71 21.69 0.19 -46.92 16 2 C 0.01 0.43 5.16 84.98 0.44 0.86 16 3 Si 0.99 42.34 29.56 68.60 2.03 44.36 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.35 -18.98 8.25 84.13 0.69 -18.29 16 8 H 0.11 6.21 5.60 -2.91 -0.02 6.20 16 9 N -0.41 -22.48 2.15 -642.54 -1.38 -23.86 16 10 C 0.15 7.47 5.17 85.63 0.44 7.91 16 11 C 0.51 25.01 6.35 71.24 0.45 25.46 16 12 O -0.55 -31.31 16.12 21.95 0.35 -30.95 16 13 O -0.52 -20.33 13.42 -51.41 -0.69 -21.03 16 14 C 0.52 28.42 7.39 86.89 0.64 29.06 16 15 O -0.61 -34.10 16.62 -3.87 -0.06 -34.17 16 16 C -0.02 -1.04 6.90 42.81 0.30 -0.74 16 17 C -0.17 -6.57 10.89 22.83 0.25 -6.32 16 18 C -0.01 -0.18 6.51 24.45 0.16 -0.02 16 19 C -0.08 -2.04 5.82 -20.05 -0.12 -2.16 16 20 C -0.07 -1.24 9.73 22.52 0.22 -1.02 16 21 C -0.12 -1.33 10.03 22.23 0.22 -1.11 16 22 C -0.06 -0.60 10.04 22.32 0.22 -0.38 16 23 C -0.15 -2.27 10.01 22.28 0.22 -2.05 16 24 C 0.10 2.38 7.29 22.64 0.16 2.55 16 25 F -0.15 -4.40 16.82 44.97 0.76 -3.64 16 26 O 0.11 4.82 11.20 67.42 0.76 5.57 16 27 N -0.32 -15.69 8.85 -48.97 -0.43 -16.12 16 28 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.12 5.82 7.03 -2.39 -0.02 5.80 16 30 H 0.10 4.52 7.57 -2.39 -0.02 4.51 16 31 H 0.41 12.33 9.10 -74.06 -0.67 11.65 16 32 H 0.19 6.54 8.06 -2.91 -0.02 6.52 16 33 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 36 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -77.78 332.19 6.33 -71.45 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.51 Total: 21.55 kcal Atomic # 6 Polarization: 29.45 SS G_CDS: 4.31 Total: 33.76 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -1.63 Total: -86.90 kcal Atomic # 8 Polarization: -80.93 SS G_CDS: 0.35 Total: -80.57 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.76 Total: -3.64 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -77.78 6.33 -71.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.376 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds