Wall clock time and date at job start Tue Mar 31 2020 18:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86795 * 120.00262 * 2 1 4 4 H 1.48507 * 109.47064 * 275.00018 * 3 2 1 5 5 H 1.48503 * 109.47145 * 34.99393 * 3 2 1 6 6 H 1.48496 * 109.47467 * 154.99788 * 3 2 1 7 7 C 1.39179 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99702 * 214.60818 * 7 2 1 9 9 N 1.36678 * 120.00097 * 34.61463 * 7 2 1 10 10 C 1.46503 * 119.99865 * 5.45408 * 9 7 2 11 11 C 1.50700 * 109.47418 * 264.81211 * 10 9 7 12 12 O 1.20828 * 119.99809 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00086 * 180.02562 * 11 10 9 14 14 C 1.34770 * 119.99886 * 185.46171 * 9 7 2 15 15 O 1.21609 * 120.00260 * 5.70332 * 14 9 7 16 16 C 1.47679 * 119.99962 * 185.70874 * 14 9 7 17 17 C 1.38979 * 121.37051 * 54.87299 * 16 14 9 18 18 C 1.39817 * 119.43135 * 179.97438 * 17 16 14 19 19 O 1.35614 * 118.79454 * 180.02562 * 18 17 16 20 20 N 1.31295 * 122.41405 * 359.91052 * 18 17 16 21 21 C 1.33598 * 122.37013 * 0.16654 * 20 18 17 22 22 C 1.40650 * 121.07731 * 179.86292 * 21 20 18 23 23 C 1.36086 * 119.75991 * 179.97438 * 22 21 20 24 24 C 1.39506 * 121.05517 * 359.97438 * 23 22 21 25 25 F 1.35098 * 119.63650 * 180.02562 * 24 23 22 26 26 C 1.36579 * 120.73978 * 0.03960 * 24 23 22 27 27 C 1.39853 * 119.57404 * 359.97438 * 26 24 23 28 28 H 0.97003 * 119.99836 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47047 * 24.81851 * 10 9 7 30 30 H 1.08999 * 109.46786 * 144.81593 * 10 9 7 31 31 H 0.96693 * 116.99665 * 180.02562 * 13 11 10 32 32 H 1.08000 * 120.28383 * 0.02562 * 17 16 14 33 33 H 0.96696 * 113.99696 * 89.99476 * 19 18 17 34 34 H 1.08004 * 120.11955 * 359.95490 * 22 21 20 35 35 H 1.08007 * 119.47451 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.21587 * 179.70725 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6176 0.0000 4 1 2.3887 2.1073 -1.3948 5 1 1.5011 2.6199 0.8029 6 1 3.5932 1.4119 0.5917 7 6 2.0086 -1.2054 0.0005 8 1 2.9452 -1.2879 0.5318 9 7 1.5066 -2.2846 -0.6714 10 6 0.2999 -2.1414 -1.4898 11 6 -0.9064 -2.5430 -0.6807 12 8 -0.7720 -2.9106 0.4624 13 8 -2.1301 -2.4923 -1.2300 14 6 2.1216 -3.4804 -0.5809 15 8 3.0604 -3.6254 0.1783 16 6 1.6554 -4.6146 -1.4038 17 6 1.5547 -4.5122 -2.7862 18 6 1.1090 -5.6118 -3.5258 19 8 1.0162 -5.4979 -4.8740 20 7 0.7792 -6.7514 -2.9633 21 6 0.8425 -6.9418 -1.6425 22 6 0.4797 -8.1735 -1.0683 23 6 0.5549 -8.3383 0.2804 24 6 0.9882 -7.3028 1.1089 25 9 1.0523 -7.4979 2.4442 26 6 1.3479 -6.0938 0.5852 27 6 1.2813 -5.8930 -0.7972 28 1 -0.4850 0.8401 -0.0004 29 1 0.1964 -1.1034 -1.8059 30 1 0.3783 -2.7825 -2.3678 31 1 -2.8732 -2.7593 -0.6719 32 1 1.8192 -3.5915 -3.2848 33 1 1.8222 -5.7477 -5.3462 34 1 0.1423 -8.9854 -1.6956 35 1 0.2748 -9.2859 0.7165 36 1 1.6775 -5.2965 1.2349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:25 Heat of formation + Delta-G solvation = -126.183567 kcal Electronic energy + Delta-G solvation = -29260.577424 eV Core-core repulsion = 24818.951377 eV Total energy + Delta-G solvation = -4441.626047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.084 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.73136 -40.81927 -39.54533 -38.33050 -38.10921 -35.50100 -35.45712 -34.80967 -33.21600 -32.05602 -30.25968 -29.18909 -27.98337 -25.87926 -24.15668 -23.36215 -22.66170 -21.35984 -20.05304 -18.83948 -18.04929 -17.60335 -17.31906 -17.19138 -16.74644 -16.19782 -15.88266 -15.48961 -15.31523 -15.18580 -14.82798 -14.66152 -14.35671 -14.18910 -13.88586 -13.46306 -13.24706 -13.08594 -12.90087 -12.48111 -12.10584 -11.94374 -11.83966 -11.68472 -11.28397 -11.23955 -11.02828 -10.67368 -10.60906 -10.53368 -10.21631 -9.88988 -9.67996 -9.24799 -8.80062 -8.63403 -8.33743 -8.00956 -6.88396 -4.06337 0.24213 0.73690 1.82640 2.66373 2.92296 3.09167 3.14735 3.18762 3.31017 3.54798 3.77146 3.95197 4.07366 4.27374 4.31206 4.50795 4.67643 4.79056 4.89091 4.94872 5.11848 5.27198 5.50453 5.61547 5.67442 5.75437 5.98385 6.03210 6.15817 6.18658 6.26460 6.30577 6.46228 6.83568 7.19550 7.28367 7.46317 7.60667 7.91831 8.02680 8.73424 8.76020 8.94118 9.49653 10.18558 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.004924 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.030573 B = 5684.569313 C = 6400.819168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.038 3.962 3 Si 0.926 3.074 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.398 5.398 10 C 0.120 3.880 11 C 0.484 3.516 12 O -0.500 6.500 13 O -0.529 6.529 14 C 0.469 3.531 15 O -0.565 6.565 16 C -0.005 4.005 17 C -0.185 4.185 18 C 0.352 3.648 19 O -0.482 6.482 20 N -0.503 5.503 21 C 0.144 3.856 22 C -0.076 4.076 23 C -0.126 4.126 24 C 0.087 3.913 25 F -0.138 7.138 26 C -0.098 4.098 27 C -0.066 4.066 28 H 0.279 0.721 29 H 0.136 0.864 30 H 0.092 0.908 31 H 0.396 0.604 32 H 0.152 0.848 33 H 0.401 0.599 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 -8.670 -7.329 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.170 4.170 3 Si 0.751 3.249 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.436 4.436 8 H 0.139 0.861 9 N -0.114 5.114 10 C -0.006 4.006 11 C 0.324 3.676 12 O -0.385 6.385 13 O -0.340 6.340 14 C 0.259 3.741 15 O -0.450 6.450 16 C -0.017 4.017 17 C -0.208 4.208 18 C 0.158 3.842 19 O -0.289 6.289 20 N -0.223 5.223 21 C 0.023 3.977 22 C -0.094 4.094 23 C -0.146 4.146 24 C 0.068 3.932 25 F -0.116 7.116 26 C -0.117 4.117 27 C -0.069 4.069 28 H 0.089 0.911 29 H 0.153 0.847 30 H 0.110 0.890 31 H 0.253 0.747 32 H 0.170 0.830 33 H 0.259 0.741 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.824 -9.085 -7.159 11.709 hybrid contribution 0.208 1.275 1.016 1.644 sum -1.616 -7.809 -6.143 10.066 Atomic orbital electron populations 1.70064 1.06701 1.29239 1.41725 1.25409 0.95057 1.00613 0.95967 0.85908 0.80288 0.79989 0.78737 1.19729 1.20779 1.18706 1.19942 1.05956 0.85286 1.32435 0.86116 1.43615 1.19982 1.07733 1.40100 1.21230 0.81598 1.05866 0.91938 1.23776 0.83868 0.72989 0.86949 1.90647 1.86017 1.43248 1.18570 1.84510 1.17772 1.82079 1.49635 1.17345 0.88442 0.81303 0.87013 1.90683 1.31386 1.81653 1.41234 1.21765 0.92811 0.93806 0.93324 1.22358 1.04027 1.00983 0.93401 1.18996 0.92468 0.88030 0.84662 1.84756 1.41977 1.88327 1.13799 1.66925 1.18287 1.24826 1.12238 1.18353 0.98360 0.93609 0.87376 1.20546 0.99331 0.95795 0.93766 1.20845 1.01246 0.99002 0.93508 1.17361 1.03349 0.94858 0.77664 1.91503 1.94201 1.95586 1.30326 1.21095 0.98529 0.97118 0.95007 1.19312 1.00763 0.93222 0.93607 0.91067 0.84675 0.88986 0.74727 0.83012 0.74084 0.83657 0.84061 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.39 10.05 55.51 0.56 -19.83 16 2 C 0.04 0.89 4.65 -17.44 -0.08 0.81 16 3 Si 0.93 18.52 29.67 -169.99 -5.04 13.48 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.31 -7.91 9.35 -15.04 -0.14 -8.05 16 8 H 0.12 3.26 7.38 -52.49 -0.39 2.87 16 9 N -0.40 -9.49 2.16 -117.24 -0.25 -9.74 16 10 C 0.12 2.51 5.00 -5.19 -0.03 2.48 16 11 C 0.48 10.58 6.90 36.01 0.25 10.83 16 12 O -0.50 -12.71 17.07 -18.75 -0.32 -13.03 16 13 O -0.53 -9.48 13.42 -39.26 -0.53 -10.00 16 14 C 0.47 11.08 6.33 -12.41 -0.08 11.00 16 15 O -0.56 -15.05 15.63 5.27 0.08 -14.96 16 16 C -0.01 -0.11 5.15 -102.50 -0.53 -0.63 16 17 C -0.19 -3.03 7.67 -38.72 -0.30 -3.32 16 18 C 0.35 5.35 7.68 -17.19 -0.13 5.22 16 19 O -0.48 -5.82 13.53 -18.54 -0.25 -6.07 16 20 N -0.50 -8.16 10.28 -11.14 -0.11 -8.27 16 21 C 0.14 2.39 6.62 -84.88 -0.56 1.83 16 22 C -0.08 -1.02 9.99 -39.44 -0.39 -1.42 16 23 C -0.13 -1.66 9.92 -39.88 -0.40 -2.05 16 24 C 0.09 1.43 7.25 -39.71 -0.29 1.14 16 25 F -0.14 -2.28 17.25 2.25 0.04 -2.25 16 26 C -0.10 -1.90 9.31 -39.58 -0.37 -2.26 16 27 C -0.07 -1.25 5.90 -104.71 -0.62 -1.87 16 28 H 0.28 6.33 8.31 -40.82 -0.34 5.99 16 29 H 0.14 2.86 6.03 -51.93 -0.31 2.55 16 30 H 0.09 1.65 4.58 -51.93 -0.24 1.41 16 31 H 0.40 5.44 9.10 45.56 0.41 5.85 16 32 H 0.15 2.17 7.38 -52.49 -0.39 1.78 16 33 H 0.40 2.67 9.06 45.56 0.41 3.08 16 34 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.15 3.38 6.71 -52.49 -0.35 3.02 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -33.07 326.78 -5.40 -38.47 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -0.83 Total: 13.58 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: -3.66 Total: 13.70 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.19 Total: -37.85 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.02 Total: -44.06 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.04 Total: 13.48 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.07 -5.40 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.715 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds