Wall clock time and date at job start Tue Mar 31 2020 18:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86795 * 120.00262 * 2 1 4 4 H 1.48507 * 109.47064 * 275.00018 * 3 2 1 5 5 H 1.48503 * 109.47145 * 34.99393 * 3 2 1 6 6 H 1.48496 * 109.47467 * 154.99788 * 3 2 1 7 7 C 1.39179 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99702 * 214.60818 * 7 2 1 9 9 N 1.36678 * 120.00097 * 34.61463 * 7 2 1 10 10 C 1.46503 * 119.99865 * 5.45408 * 9 7 2 11 11 C 1.50700 * 109.47418 * 264.81211 * 10 9 7 12 12 O 1.20828 * 119.99809 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00086 * 180.02562 * 11 10 9 14 14 C 1.34770 * 119.99886 * 185.46171 * 9 7 2 15 15 O 1.21609 * 120.00260 * 5.70332 * 14 9 7 16 16 C 1.47679 * 119.99962 * 185.70874 * 14 9 7 17 17 C 1.38979 * 121.37051 * 54.87299 * 16 14 9 18 18 C 1.39817 * 119.43135 * 179.97438 * 17 16 14 19 19 O 1.35614 * 118.79454 * 180.02562 * 18 17 16 20 20 N 1.31295 * 122.41405 * 359.91052 * 18 17 16 21 21 C 1.33598 * 122.37013 * 0.16654 * 20 18 17 22 22 C 1.40650 * 121.07731 * 179.86292 * 21 20 18 23 23 C 1.36086 * 119.75991 * 179.97438 * 22 21 20 24 24 C 1.39506 * 121.05517 * 359.97438 * 23 22 21 25 25 F 1.35098 * 119.63650 * 180.02562 * 24 23 22 26 26 C 1.36579 * 120.73978 * 0.03960 * 24 23 22 27 27 C 1.39853 * 119.57404 * 359.97438 * 26 24 23 28 28 H 0.97003 * 119.99836 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47047 * 24.81851 * 10 9 7 30 30 H 1.08999 * 109.46786 * 144.81593 * 10 9 7 31 31 H 0.96693 * 116.99665 * 180.02562 * 13 11 10 32 32 H 1.08000 * 120.28383 * 0.02562 * 17 16 14 33 33 H 0.96696 * 113.99696 * 89.99476 * 19 18 17 34 34 H 1.08004 * 120.11955 * 359.95490 * 22 21 20 35 35 H 1.08007 * 119.47451 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.21587 * 179.70725 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6176 0.0000 4 1 2.3887 2.1073 -1.3948 5 1 1.5011 2.6199 0.8029 6 1 3.5932 1.4119 0.5917 7 6 2.0086 -1.2054 0.0005 8 1 2.9452 -1.2879 0.5318 9 7 1.5066 -2.2846 -0.6714 10 6 0.2999 -2.1414 -1.4898 11 6 -0.9064 -2.5430 -0.6807 12 8 -0.7720 -2.9106 0.4624 13 8 -2.1301 -2.4923 -1.2300 14 6 2.1216 -3.4804 -0.5809 15 8 3.0604 -3.6254 0.1783 16 6 1.6554 -4.6146 -1.4038 17 6 1.5547 -4.5122 -2.7862 18 6 1.1090 -5.6118 -3.5258 19 8 1.0162 -5.4979 -4.8740 20 7 0.7792 -6.7514 -2.9633 21 6 0.8425 -6.9418 -1.6425 22 6 0.4797 -8.1735 -1.0683 23 6 0.5549 -8.3383 0.2804 24 6 0.9882 -7.3028 1.1089 25 9 1.0523 -7.4979 2.4442 26 6 1.3479 -6.0938 0.5852 27 6 1.2813 -5.8930 -0.7972 28 1 -0.4850 0.8401 -0.0004 29 1 0.1964 -1.1034 -1.8059 30 1 0.3783 -2.7825 -2.3678 31 1 -2.8732 -2.7593 -0.6719 32 1 1.8192 -3.5915 -3.2848 33 1 1.8222 -5.7477 -5.3462 34 1 0.1423 -8.9854 -1.6956 35 1 0.2748 -9.2859 0.7165 36 1 1.6775 -5.2965 1.2349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739079466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:24 Heat of formation + Delta-G solvation = -153.087422 kcal Electronic energy + Delta-G solvation = -29261.744063 eV Core-core repulsion = 24818.951377 eV Total energy + Delta-G solvation = -4442.792686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.084 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.07640 -42.19788 -41.18783 -40.01739 -39.27508 -37.21281 -36.65150 -36.58415 -34.70235 -33.77251 -31.55819 -30.45827 -29.71000 -27.59109 -25.59203 -24.64037 -24.07098 -23.02024 -21.47540 -20.21606 -19.33857 -19.20850 -18.89521 -18.78168 -18.23431 -17.61347 -17.45416 -16.88454 -16.80465 -16.55484 -16.40012 -16.17277 -16.06473 -15.54273 -15.37626 -14.85417 -14.60856 -14.51387 -14.31197 -13.97329 -13.77509 -13.66491 -13.39629 -12.84833 -12.79728 -12.49746 -12.42999 -12.34784 -12.23640 -12.16823 -11.77598 -11.56686 -11.17015 -11.04727 -10.44672 -10.18166 -9.87211 -9.32684 -8.68987 -5.99643 -1.06991 -0.51879 0.49045 1.24971 1.41021 1.45572 1.51562 1.56531 1.64710 2.14524 2.34696 2.40647 2.61975 2.77639 2.89396 3.00495 3.29230 3.36960 3.43417 3.72464 3.89303 3.97436 4.07537 4.20876 4.36445 4.43202 4.52464 4.67315 4.83095 4.86424 4.95780 5.00153 5.19106 5.33987 5.60326 5.75145 5.77265 6.18699 6.51033 6.74748 6.89133 7.06069 7.22022 7.68967 8.38383 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.004924 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.030573 B = 5684.569313 C = 6400.819168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.015 3.985 3 Si 0.991 3.009 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.357 4.357 8 H 0.088 0.912 9 N -0.408 5.408 10 C 0.122 3.878 11 C 0.488 3.512 12 O -0.545 6.545 13 O -0.514 6.514 14 C 0.467 3.533 15 O -0.612 6.612 16 C -0.039 4.039 17 C -0.164 4.164 18 C 0.362 3.638 19 O -0.475 6.475 20 N -0.493 5.493 21 C 0.133 3.867 22 C -0.054 4.054 23 C -0.112 4.112 24 C 0.095 3.905 25 F -0.141 7.141 26 C -0.141 4.141 27 C -0.082 4.082 28 H 0.285 0.715 29 H 0.134 0.866 30 H 0.122 0.878 31 H 0.416 0.584 32 H 0.172 0.828 33 H 0.428 0.572 34 H 0.189 0.811 35 H 0.189 0.811 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 -10.606 -10.222 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.191 4.191 3 Si 0.813 3.187 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.483 4.483 8 H 0.106 0.894 9 N -0.124 5.124 10 C -0.003 4.003 11 C 0.330 3.670 12 O -0.433 6.433 13 O -0.326 6.326 14 C 0.258 3.742 15 O -0.500 6.500 16 C -0.050 4.050 17 C -0.186 4.186 18 C 0.167 3.833 19 O -0.286 6.286 20 N -0.213 5.213 21 C 0.013 3.987 22 C -0.073 4.073 23 C -0.131 4.131 24 C 0.076 3.924 25 F -0.120 7.120 26 C -0.161 4.161 27 C -0.085 4.085 28 H 0.095 0.905 29 H 0.152 0.848 30 H 0.140 0.860 31 H 0.276 0.724 32 H 0.189 0.811 33 H 0.291 0.709 34 H 0.206 0.794 35 H 0.206 0.794 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.390 -11.024 -10.108 15.336 hybrid contribution 0.613 1.682 1.834 2.563 sum -2.777 -9.342 -8.273 12.784 Atomic orbital electron populations 1.70098 1.07558 1.30198 1.41838 1.26111 0.95693 1.02670 0.94659 0.84979 0.78211 0.75941 0.79543 1.17582 1.20356 1.19954 1.19728 1.06114 0.87388 1.35106 0.89440 1.43617 1.20867 1.07590 1.40319 1.21326 0.80448 1.06349 0.92198 1.23905 0.84981 0.71838 0.86266 1.90639 1.86805 1.45393 1.20506 1.84443 1.17270 1.81421 1.49464 1.17959 0.87449 0.82157 0.86637 1.90617 1.33464 1.82780 1.43160 1.21480 0.95885 0.93171 0.94446 1.22594 1.01795 1.02252 0.91944 1.18940 0.91377 0.87143 0.85842 1.84723 1.43744 1.88331 1.11781 1.67072 1.17712 1.24855 1.11694 1.18719 0.98526 0.94097 0.87375 1.21045 0.96839 0.95221 0.94148 1.21236 0.99535 0.99361 0.92996 1.17659 1.02176 0.94780 0.77824 1.91491 1.94108 1.95519 1.30883 1.20841 1.02272 0.97657 0.95285 1.19427 1.01684 0.93709 0.93641 0.90460 0.84833 0.86045 0.72398 0.81108 0.70928 0.79420 0.79386 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.57 10.05 21.70 0.22 -42.35 16 2 C 0.02 0.75 4.65 85.00 0.40 1.14 16 3 Si 0.99 38.92 29.67 68.60 2.04 40.95 16 4 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 5 H -0.28 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.36 -19.49 9.35 84.16 0.79 -18.71 16 8 H 0.09 5.21 7.38 -2.91 -0.02 5.19 16 9 N -0.41 -20.58 2.16 -643.10 -1.39 -21.97 16 10 C 0.12 5.19 5.00 85.63 0.43 5.62 16 11 C 0.49 21.63 6.90 71.24 0.49 22.13 16 12 O -0.54 -28.91 17.07 21.96 0.37 -28.53 16 13 O -0.51 -17.81 13.42 -51.43 -0.69 -18.50 16 14 C 0.47 23.64 6.33 86.74 0.55 24.19 16 15 O -0.61 -35.82 15.63 -4.06 -0.06 -35.88 16 16 C -0.04 -1.57 5.15 -18.49 -0.10 -1.67 16 17 C -0.16 -5.14 7.67 22.83 0.18 -4.96 16 18 C 0.36 9.85 7.68 85.16 0.65 10.50 16 19 O -0.47 -9.41 13.53 -89.25 -1.21 -10.62 16 20 N -0.49 -14.28 10.28 -302.55 -3.11 -17.39 16 21 C 0.13 4.13 6.62 40.31 0.27 4.39 16 22 C -0.05 -1.24 9.99 22.36 0.22 -1.01 16 23 C -0.11 -2.54 9.92 22.07 0.22 -2.32 16 24 C 0.09 3.11 7.25 22.19 0.16 3.27 16 25 F -0.14 -4.74 17.25 44.97 0.78 -3.96 16 26 C -0.14 -5.77 9.31 22.27 0.21 -5.57 16 27 C -0.08 -3.15 5.90 -19.92 -0.12 -3.27 16 28 H 0.29 12.97 8.31 -92.71 -0.77 12.20 16 29 H 0.13 5.70 6.03 -2.39 -0.01 5.69 16 30 H 0.12 4.28 4.58 -2.39 -0.01 4.27 16 31 H 0.42 10.85 9.10 -74.06 -0.67 10.18 16 32 H 0.17 4.58 7.38 -2.91 -0.02 4.56 16 33 H 0.43 3.68 9.06 -74.06 -0.67 3.01 16 34 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.19 2.57 8.06 -2.91 -0.02 2.54 16 36 H 0.11 5.30 6.71 -2.91 -0.02 5.28 16 Total: -1.00 -78.80 326.78 1.16 -77.64 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -0.13 Total: 26.89 kcal Atomic # 6 Polarization: 29.38 SS G_CDS: 4.35 Total: 33.72 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -4.28 Total: -81.70 kcal Atomic # 8 Polarization: -91.95 SS G_CDS: -1.59 Total: -93.53 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.78 Total: -3.96 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.04 Total: 40.95 kcal Total: -78.80 1.16 -77.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.451 kcal (2) G-P(sol) polarization free energy of solvation -78.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds