Wall clock time and date at job start Tue Mar 31 2020 18:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29316 * 1 3 3 Si 1.86801 * 120.00304 * 2 1 4 4 H 1.48503 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46819 * 300.00310 * 3 2 1 6 6 H 1.48500 * 109.46934 * 60.00050 * 3 2 1 7 7 C 1.46790 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99502 * 184.90631 * 7 2 1 9 9 N 1.33285 * 120.00030 * 5.18797 * 7 2 1 10 10 C 1.46496 * 120.00085 * 325.63554 * 9 7 2 11 11 C 1.50698 * 109.47114 * 96.66430 * 10 9 7 12 12 O 1.20823 * 119.99985 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99623 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99834 * 145.63497 * 9 7 2 15 15 O 1.21546 * 119.99754 * 174.70998 * 14 9 7 16 16 C 1.47190 * 119.99954 * 354.71048 * 14 9 7 17 17 N 1.31691 * 126.83260 * 4.41093 * 16 14 9 18 18 N 1.28379 * 111.94002 * 179.87144 * 17 16 14 19 19 H 0.97004 * 124.36365 * 180.15169 * 18 17 16 20 20 C 1.37081 * 111.26848 * 0.41068 * 18 17 16 21 21 C 1.39129 * 134.66940 * 179.76309 * 20 18 17 22 22 C 1.37689 * 119.67126 * 179.97438 * 21 20 18 23 23 C 1.38904 * 120.74209 * 0.02562 * 22 21 20 24 24 N 1.48012 * 119.73784 * 179.97438 * 23 22 21 25 25 O 1.31701 * 119.99841 * 0.02562 * 24 23 22 26 26 O 1.31702 * 120.00202 * 180.02562 * 24 23 22 27 27 C 1.36718 * 120.52470 * 359.97388 * 23 22 21 28 28 C 1.39151 * 119.65091 * 0.02562 * 27 23 22 29 29 H 0.97003 * 119.99667 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46880 * 216.66503 * 10 9 7 31 31 H 1.09005 * 109.47101 * 336.66287 * 10 9 7 32 32 H 0.96699 * 116.99673 * 179.97438 * 13 11 10 33 33 H 1.08000 * 120.16778 * 0.02562 * 21 20 18 34 34 H 1.07995 * 119.63172 * 179.97438 * 22 21 20 35 35 H 1.07992 * 120.17089 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2272 1.6177 0.0000 4 1 3.6873 1.3463 -0.0006 5 1 1.8684 2.3964 -1.2125 6 1 1.8685 2.3964 1.2125 7 6 2.0270 -1.2713 -0.0006 8 1 3.1041 -1.2730 0.0794 9 7 1.3646 -2.4231 -0.1055 10 6 0.0394 -2.5641 0.5030 11 6 -1.0206 -2.3154 -0.5389 12 8 -0.7019 -2.0475 -1.6731 13 8 -2.3190 -2.3906 -0.2065 14 6 1.9140 -3.4582 -0.7713 15 8 1.3546 -4.5372 -0.7856 16 6 3.1913 -3.2819 -1.4811 17 7 3.9485 -2.2045 -1.4880 18 7 5.0039 -2.3645 -2.2012 19 1 5.6863 -1.6869 -2.3290 20 6 5.0394 -3.6141 -2.7634 21 6 5.9256 -4.2856 -3.5998 22 6 5.6503 -5.5776 -3.9881 23 6 4.4968 -6.2187 -3.5547 24 7 4.2225 -7.6077 -3.9864 25 8 5.0709 -8.2309 -4.7779 26 8 3.1302 -8.2204 -3.5790 27 6 3.6128 -5.5770 -2.7326 28 6 3.8721 -4.2710 -2.3283 29 1 -0.4850 0.8401 0.0004 30 1 -0.0720 -3.5725 0.9013 31 1 -0.0683 -1.8403 1.3109 32 1 -2.9623 -2.2228 -0.9086 33 1 6.8255 -3.7962 -3.9420 34 1 6.3384 -6.0980 -4.6377 35 1 2.7179 -6.0811 -2.3988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:05 Heat of formation + Delta-G solvation = 16.912907 kcal Electronic energy + Delta-G solvation = -28523.110000 eV Core-core repulsion = 24107.609044 eV Total energy + Delta-G solvation = -4415.500957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.084 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.40648 -39.50984 -39.26631 -38.09839 -37.23375 -35.33239 -34.68841 -34.21325 -32.56169 -32.25071 -30.90453 -30.16297 -28.03458 -26.45259 -24.95003 -23.46987 -23.06869 -22.11407 -20.80595 -19.55371 -18.70546 -18.40176 -17.78304 -17.22510 -17.08522 -16.69369 -15.94453 -15.74985 -15.55488 -15.34025 -14.90513 -14.61886 -14.59995 -14.42626 -13.96334 -13.47488 -13.40000 -13.02923 -12.38989 -12.04272 -11.95987 -11.75973 -11.59193 -11.44362 -11.11705 -11.07111 -10.93498 -10.62950 -10.49155 -10.41058 -10.31101 -10.20077 -9.59828 -9.30380 -9.11925 -9.03045 -8.33631 -8.18178 -6.96818 -4.14564 -0.48738 0.71060 1.26285 1.32777 2.16924 2.76130 2.90191 2.98106 3.02147 3.25831 3.52318 3.64168 3.89912 4.10567 4.20557 4.29723 4.53600 4.64401 4.72453 4.85383 4.89235 5.07254 5.55556 5.66315 5.74111 5.76002 5.88933 6.10553 6.33031 6.37300 6.40767 6.49734 6.86326 6.98098 7.03073 7.38610 7.50932 8.04364 8.14264 8.52743 9.03744 9.14940 9.59165 10.07987 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.004146 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.548748 B = 6752.422831 C = 8347.147147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.056 3.944 3 Si 0.935 3.065 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.349 4.349 8 H 0.129 0.871 9 N -0.374 5.374 10 C 0.146 3.854 11 C 0.501 3.499 12 O -0.510 6.510 13 O -0.533 6.533 14 C 0.508 3.492 15 O -0.599 6.599 16 C 0.081 3.919 17 N -0.195 5.195 18 N -0.423 5.423 19 H 0.445 0.555 20 C 0.108 3.892 21 C -0.120 4.120 22 C -0.040 4.040 23 C -0.044 4.044 24 N -0.004 5.004 25 O -0.195 6.195 26 O -0.180 6.180 27 C 0.053 3.947 28 C -0.127 4.127 29 H 0.286 0.714 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.393 0.607 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 0.739 -1.573 8.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.160 4.160 3 Si 0.760 3.240 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.481 4.481 8 H 0.146 0.854 9 N -0.088 5.088 10 C 0.021 3.979 11 C 0.342 3.658 12 O -0.396 6.396 13 O -0.344 6.344 14 C 0.299 3.701 15 O -0.485 6.485 16 C -0.088 4.088 17 N -0.021 5.021 18 N -0.137 5.137 19 H 0.290 0.710 20 C -0.012 4.012 21 C -0.142 4.142 22 C -0.063 4.063 23 C -0.133 4.133 24 N 0.470 4.530 25 O -0.383 6.383 26 O -0.371 6.371 27 C 0.032 3.968 28 C -0.136 4.136 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.249 0.751 33 H 0.166 0.834 34 H 0.174 0.826 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.127 2.023 -0.952 8.429 hybrid contribution 0.081 0.513 -1.179 1.288 sum 8.208 2.536 -2.131 8.851 Atomic orbital electron populations 1.68625 1.08280 1.30039 1.38554 1.27166 0.94757 1.00800 0.93300 0.85731 0.80512 0.79589 0.78162 1.18236 1.20296 1.20247 1.21112 0.93488 0.81334 1.52207 0.85448 1.42128 1.13666 1.11976 1.41076 1.20630 0.80801 1.02810 0.93627 1.23423 0.81574 0.71492 0.89339 1.90582 1.81989 1.44086 1.22904 1.84502 1.18421 1.84774 1.46673 1.16678 0.84368 0.86138 0.82884 1.90652 1.64582 1.26890 1.66419 1.22984 0.96894 0.87916 1.01019 1.73959 0.95000 1.22999 1.10157 1.43749 1.19855 1.11216 1.38854 0.70976 1.19594 0.96493 0.88248 0.96836 1.19841 1.00215 0.93702 1.00466 1.20599 0.94372 0.93717 0.97569 1.19701 1.01649 0.81869 1.10083 1.50337 1.00964 1.03458 0.98211 1.96222 1.41675 1.68115 1.32332 1.96302 1.12119 1.68736 1.59989 1.20265 0.97202 0.91712 0.87665 1.19248 0.96139 0.94591 1.03665 0.90186 0.89181 0.85708 0.75093 0.83417 0.82624 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -18.96 8.73 56.00 0.49 -18.47 16 2 C 0.06 1.26 5.50 -15.16 -0.08 1.17 16 3 Si 0.94 17.49 29.65 -169.99 -5.04 12.45 16 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.35 -8.04 8.36 -13.47 -0.11 -8.15 16 8 H 0.13 2.84 5.75 -52.48 -0.30 2.54 16 9 N -0.37 -8.82 2.08 -115.85 -0.24 -9.06 16 10 C 0.15 3.20 5.16 -5.20 -0.03 3.17 16 11 C 0.50 11.33 6.32 36.00 0.23 11.55 16 12 O -0.51 -13.30 16.42 -18.75 -0.31 -13.61 16 13 O -0.53 -9.85 13.42 -39.26 -0.53 -10.37 16 14 C 0.51 12.10 7.35 -12.62 -0.09 12.01 16 15 O -0.60 -15.13 16.05 5.33 0.09 -15.04 16 16 C 0.08 1.68 7.03 -80.76 -0.57 1.11 16 17 N -0.20 -3.60 8.88 34.45 0.31 -3.30 16 18 N -0.42 -5.74 6.85 32.34 0.22 -5.52 16 19 H 0.45 4.03 8.96 -190.49 -1.71 2.32 16 20 C 0.11 1.49 7.38 -84.21 -0.62 0.87 16 21 C -0.12 -1.25 10.08 -39.45 -0.40 -1.65 16 22 C -0.04 -0.48 9.54 -39.54 -0.38 -0.86 16 23 C -0.04 -0.68 6.85 -80.25 -0.55 -1.23 16 24 N 0.00 -0.07 4.98 33.81 0.17 0.10 16 25 O -0.19 -3.30 19.12 -31.57 -0.60 -3.91 16 26 O -0.18 -3.42 19.11 -31.57 -0.60 -4.02 16 27 C 0.05 0.92 9.38 -39.79 -0.37 0.55 16 28 C -0.13 -2.27 6.34 -105.05 -0.67 -2.93 16 29 H 0.29 6.20 8.26 -40.82 -0.34 5.87 16 30 H 0.09 1.85 7.56 -51.93 -0.39 1.45 16 31 H 0.13 2.64 6.86 -51.93 -0.36 2.29 16 32 H 0.39 5.59 9.10 45.56 0.41 6.00 16 33 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.16 1.48 7.55 -52.49 -0.40 1.09 16 35 H 0.17 3.16 7.12 -52.49 -0.37 2.79 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -31.85 325.14 -7.46 -39.31 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -2.67 Total: 10.93 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: -3.64 Total: 15.62 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.94 Total: -36.25 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -1.96 Total: -46.96 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.04 Total: 12.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.85 -7.46 -39.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.220 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds