Wall clock time and date at job start Tue Mar 31 2020 18:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29316 * 1 3 3 Si 1.86801 * 120.00304 * 2 1 4 4 H 1.48503 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46819 * 300.00310 * 3 2 1 6 6 H 1.48500 * 109.46934 * 60.00050 * 3 2 1 7 7 C 1.46790 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99502 * 184.90631 * 7 2 1 9 9 N 1.33285 * 120.00030 * 5.18797 * 7 2 1 10 10 C 1.46496 * 120.00085 * 325.63554 * 9 7 2 11 11 C 1.50698 * 109.47114 * 96.66430 * 10 9 7 12 12 O 1.20823 * 119.99985 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99623 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99834 * 145.63497 * 9 7 2 15 15 O 1.21546 * 119.99754 * 174.70998 * 14 9 7 16 16 C 1.47190 * 119.99954 * 354.71048 * 14 9 7 17 17 N 1.31691 * 126.83260 * 4.41093 * 16 14 9 18 18 N 1.28379 * 111.94002 * 179.87144 * 17 16 14 19 19 H 0.97004 * 124.36365 * 180.15169 * 18 17 16 20 20 C 1.37081 * 111.26848 * 0.41068 * 18 17 16 21 21 C 1.39129 * 134.66940 * 179.76309 * 20 18 17 22 22 C 1.37689 * 119.67126 * 179.97438 * 21 20 18 23 23 C 1.38904 * 120.74209 * 0.02562 * 22 21 20 24 24 N 1.48012 * 119.73784 * 179.97438 * 23 22 21 25 25 O 1.31701 * 119.99841 * 0.02562 * 24 23 22 26 26 O 1.31702 * 120.00202 * 180.02562 * 24 23 22 27 27 C 1.36718 * 120.52470 * 359.97388 * 23 22 21 28 28 C 1.39151 * 119.65091 * 0.02562 * 27 23 22 29 29 H 0.97003 * 119.99667 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46880 * 216.66503 * 10 9 7 31 31 H 1.09005 * 109.47101 * 336.66287 * 10 9 7 32 32 H 0.96699 * 116.99673 * 179.97438 * 13 11 10 33 33 H 1.08000 * 120.16778 * 0.02562 * 21 20 18 34 34 H 1.07995 * 119.63172 * 179.97438 * 22 21 20 35 35 H 1.07992 * 120.17089 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2272 1.6177 0.0000 4 1 3.6873 1.3463 -0.0006 5 1 1.8684 2.3964 -1.2125 6 1 1.8685 2.3964 1.2125 7 6 2.0270 -1.2713 -0.0006 8 1 3.1041 -1.2730 0.0794 9 7 1.3646 -2.4231 -0.1055 10 6 0.0394 -2.5641 0.5030 11 6 -1.0206 -2.3154 -0.5389 12 8 -0.7019 -2.0475 -1.6731 13 8 -2.3190 -2.3906 -0.2065 14 6 1.9140 -3.4582 -0.7713 15 8 1.3546 -4.5372 -0.7856 16 6 3.1913 -3.2819 -1.4811 17 7 3.9485 -2.2045 -1.4880 18 7 5.0039 -2.3645 -2.2012 19 1 5.6863 -1.6869 -2.3290 20 6 5.0394 -3.6141 -2.7634 21 6 5.9256 -4.2856 -3.5998 22 6 5.6503 -5.5776 -3.9881 23 6 4.4968 -6.2187 -3.5547 24 7 4.2225 -7.6077 -3.9864 25 8 5.0709 -8.2309 -4.7779 26 8 3.1302 -8.2204 -3.5790 27 6 3.6128 -5.5770 -2.7326 28 6 3.8721 -4.2710 -2.3283 29 1 -0.4850 0.8401 0.0004 30 1 -0.0720 -3.5725 0.9013 31 1 -0.0683 -1.8403 1.3109 32 1 -2.9623 -2.2228 -0.9086 33 1 6.8255 -3.7962 -3.9420 34 1 6.3384 -6.0980 -4.6377 35 1 2.7179 -6.0811 -2.3988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739087346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:04 Heat of formation + Delta-G solvation = -5.537815 kcal Electronic energy + Delta-G solvation = -28524.083537 eV Core-core repulsion = 24107.609044 eV Total energy + Delta-G solvation = -4416.474493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.084 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.70684 -41.23833 -40.59547 -39.83550 -38.49882 -37.06022 -36.45889 -35.58962 -34.01986 -33.77640 -32.18111 -31.44555 -29.68899 -27.82100 -26.62852 -24.80216 -24.44381 -23.37101 -22.44217 -21.20162 -20.04167 -19.69006 -19.14278 -18.89667 -18.59027 -18.24769 -17.53943 -17.18733 -16.93258 -16.70890 -16.36190 -16.32692 -16.20190 -15.74311 -15.25767 -15.10257 -14.68697 -14.49486 -13.77999 -13.61481 -13.56254 -13.26143 -13.11885 -12.90462 -12.61157 -12.46558 -12.29214 -12.18468 -12.04814 -11.90704 -11.84856 -11.47169 -11.37115 -11.02243 -10.81777 -10.35533 -10.01986 -9.45242 -8.62047 -5.89702 -1.84708 -0.43609 0.01497 0.03952 0.71972 1.42667 1.45927 1.58175 1.64932 1.74124 2.02210 2.15117 2.31867 2.54635 2.69267 3.03002 3.04789 3.30980 3.41855 3.56755 3.76077 3.94262 4.26724 4.36051 4.45738 4.60990 4.63700 4.67851 4.74975 4.81488 4.94721 5.22060 5.23642 5.60915 5.66141 5.89621 5.98047 6.38820 6.71939 6.85334 7.34247 7.43152 7.87118 8.43408 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.004146 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.548748 B = 6752.422831 C = 8347.147147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.018 3.982 3 Si 0.997 3.003 4 H -0.245 1.245 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.375 4.375 8 H 0.132 0.868 9 N -0.384 5.384 10 C 0.142 3.858 11 C 0.505 3.495 12 O -0.551 6.551 13 O -0.520 6.520 14 C 0.492 3.508 15 O -0.632 6.632 16 C 0.039 3.961 17 N -0.191 5.191 18 N -0.396 5.396 19 H 0.469 0.531 20 C 0.121 3.879 21 C -0.077 4.077 22 C -0.034 4.034 23 C -0.039 4.039 24 N -0.005 5.005 25 O -0.142 6.142 26 O -0.261 6.261 27 C 0.029 3.971 28 C -0.153 4.153 29 H 0.287 0.713 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.413 0.587 33 H 0.213 0.787 34 H 0.196 0.804 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.293 2.151 -3.346 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.194 4.194 3 Si 0.819 3.181 4 H -0.168 1.168 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.506 4.506 8 H 0.149 0.851 9 N -0.098 5.098 10 C 0.018 3.982 11 C 0.348 3.652 12 O -0.440 6.440 13 O -0.332 6.332 14 C 0.284 3.716 15 O -0.521 6.521 16 C -0.130 4.130 17 N -0.019 5.019 18 N -0.116 5.116 19 H 0.320 0.680 20 C 0.002 3.998 21 C -0.099 4.099 22 C -0.056 4.056 23 C -0.128 4.128 24 N 0.467 4.533 25 O -0.349 6.349 26 O -0.432 6.432 27 C 0.007 3.993 28 C -0.162 4.162 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.273 0.727 33 H 0.230 0.770 34 H 0.213 0.787 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.203 3.438 -2.598 12.941 hybrid contribution -0.999 -0.017 -0.806 1.284 sum 11.204 3.422 -3.403 12.199 Atomic orbital electron populations 1.68680 1.09398 1.30598 1.39518 1.27962 0.95481 1.03363 0.92637 0.84811 0.80017 0.75557 0.77684 1.16780 1.21307 1.19502 1.21291 0.93816 0.81542 1.53947 0.85120 1.42267 1.13993 1.12222 1.41289 1.20693 0.80871 1.03025 0.93660 1.23508 0.82617 0.70393 0.88685 1.90550 1.82863 1.46191 1.24396 1.84439 1.17381 1.84045 1.47307 1.17213 0.85725 0.85764 0.82875 1.90595 1.65960 1.28001 1.67572 1.22631 0.97097 0.90071 1.03154 1.73759 0.95667 1.22312 1.10184 1.43691 1.18853 1.11867 1.37147 0.68031 1.19818 0.95578 0.87607 0.96820 1.20524 1.00360 0.92300 0.96682 1.21133 0.92946 0.94145 0.97335 1.20009 1.02492 0.80755 1.09565 1.50598 1.00633 1.04171 0.97865 1.96167 1.40532 1.68150 1.30032 1.96343 1.13750 1.69887 1.63242 1.20008 0.97336 0.92221 0.89722 1.19309 0.97804 0.94725 1.04331 0.90136 0.88792 0.85366 0.72742 0.76978 0.78739 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -40.09 8.73 23.26 0.20 -39.89 16 2 C 0.02 0.84 5.50 87.30 0.48 1.32 16 3 Si 1.00 35.44 29.65 68.60 2.03 37.48 16 4 H -0.25 -8.04 7.11 99.48 0.71 -7.33 16 5 H -0.29 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.38 -17.71 8.36 86.71 0.73 -16.99 16 8 H 0.13 5.88 5.75 -2.91 -0.02 5.87 16 9 N -0.38 -19.01 2.08 -638.71 -1.33 -20.34 16 10 C 0.14 6.59 5.16 85.63 0.44 7.03 16 11 C 0.51 23.86 6.32 71.24 0.45 24.31 16 12 O -0.55 -30.05 16.42 21.97 0.36 -29.69 16 13 O -0.52 -19.62 13.42 -51.44 -0.69 -20.31 16 14 C 0.49 24.89 7.35 86.59 0.64 25.53 16 15 O -0.63 -34.61 16.05 -3.86 -0.06 -34.67 16 16 C 0.04 1.66 7.03 43.80 0.31 1.97 16 17 N -0.19 -6.88 8.88 -44.92 -0.40 -7.28 16 18 N -0.40 -9.36 6.85 -51.60 -0.35 -9.72 16 19 H 0.47 6.10 8.96 -220.03 -1.97 4.13 16 20 C 0.12 2.88 7.38 39.17 0.29 3.16 16 21 C -0.08 -1.09 10.08 22.35 0.23 -0.86 16 22 C -0.03 -0.61 9.54 22.30 0.21 -0.40 16 23 C -0.04 -1.15 6.85 36.18 0.25 -0.90 16 24 N 0.00 -0.16 4.98 -46.93 -0.23 -0.40 16 25 O -0.14 -4.38 19.12 3.51 0.07 -4.31 16 26 O -0.26 -10.59 19.11 3.51 0.07 -10.52 16 27 C 0.03 1.05 9.38 22.13 0.21 1.26 16 28 C -0.15 -5.43 6.34 -20.14 -0.13 -5.56 16 29 H 0.29 12.70 8.26 -92.71 -0.77 11.94 16 30 H 0.09 4.15 7.56 -2.39 -0.02 4.13 16 31 H 0.13 5.73 6.86 -2.38 -0.02 5.71 16 32 H 0.41 11.85 9.10 -74.06 -0.67 11.18 16 33 H 0.21 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.20 2.20 7.55 -2.91 -0.02 2.18 16 35 H 0.13 5.67 7.12 -2.91 -0.02 5.65 16 Total: -1.00 -76.58 325.14 2.35 -74.23 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -1.41 Total: 25.56 kcal Atomic # 6 Polarization: 35.77 SS G_CDS: 4.10 Total: 39.87 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -2.11 Total: -77.63 kcal Atomic # 8 Polarization: -99.25 SS G_CDS: -0.26 Total: -99.51 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.48 kcal Total: -76.58 2.35 -74.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.687 kcal (2) G-P(sol) polarization free energy of solvation -76.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds