Wall clock time and date at job start Tue Mar 31 2020 17:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35420 * 119.57749 * 2 1 4 4 C 1.41902 * 117.83631 * 179.97438 * 3 2 1 5 5 O 1.22106 * 121.40715 * 179.97438 * 4 3 2 6 6 C 1.47199 * 117.18624 * 0.02562 * 4 3 2 7 7 C 1.47456 * 120.63143 * 179.97438 * 6 4 3 8 8 O 1.21532 * 119.99716 * 0.02562 * 7 6 4 9 9 O 1.34754 * 119.99550 * 179.97438 * 7 6 4 10 10 C 1.34837 * 116.99573 * 180.02562 * 9 7 6 11 11 H 1.07994 * 120.00344 * 359.97438 * 10 9 7 12 12 C 1.38833 * 120.00020 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99837 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00386 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47608 * 89.99498 * 14 12 10 16 16 H 1.48502 * 109.47356 * 210.00026 * 14 12 10 17 17 H 1.48505 * 109.47014 * 329.99648 * 14 12 10 18 18 N 1.31728 * 118.73768 * 359.97438 * 6 4 3 19 19 N 1.28193 * 122.07980 * 0.02562 * 18 6 4 20 20 C 1.39882 * 118.34300 * 179.97438 * 19 18 6 21 21 C 1.38950 * 120.06693 * 46.12200 * 20 19 18 22 22 C 1.38079 * 119.94964 * 179.78833 * 21 20 19 23 23 C 1.38294 * 120.08717 * 0.46985 * 22 21 20 24 24 C 1.38391 * 120.13732 * 359.78142 * 23 22 21 25 25 Cl 1.73602 * 119.97622 * 179.97438 * 24 23 22 26 26 C 1.38232 * 120.04844 * 359.97438 * 24 23 22 27 27 H 1.08997 * 109.47299 * 94.29684 * 1 2 3 28 28 H 1.08995 * 109.47298 * 214.30244 * 1 2 3 29 29 H 1.09006 * 109.47084 * 334.30008 * 1 2 3 30 30 H 1.08002 * 121.08086 * 0.25218 * 3 2 1 31 31 H 0.96996 * 119.99850 * 180.02562 * 13 12 10 32 32 H 1.08002 * 120.02801 * 0.02562 * 21 20 19 33 33 H 1.08000 * 119.95887 * 180.21235 * 22 21 20 34 34 H 1.08003 * 119.93173 * 179.76788 * 23 22 21 35 35 H 1.08001 * 120.04567 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1754 1.1777 0.0000 4 6 3.5938 1.1346 0.0006 5 8 4.2615 2.1570 0.0001 6 6 4.2262 -0.1946 0.0005 7 6 5.6947 -0.3279 0.0005 8 8 6.3950 0.6654 0.0010 9 8 6.2602 -1.5511 0.0010 10 6 7.6076 -1.6025 0.0015 11 1 8.1829 -0.6886 0.0011 12 6 8.2553 -2.8304 0.0015 13 7 7.5553 -3.9426 0.0015 14 14 10.1219 -2.9018 0.0029 15 1 10.6156 -2.9212 1.4033 16 1 10.5708 -4.1320 -0.6973 17 1 10.6634 -1.7088 -0.6963 18 7 3.4553 -1.2628 0.0005 19 7 2.1761 -1.1792 0.0000 20 6 1.4332 -2.3644 -0.0006 21 6 1.7694 -3.3972 0.8662 22 6 1.0317 -4.5644 0.8666 23 6 -0.0352 -4.7106 -0.0011 24 6 -0.3700 -3.6864 -0.8695 25 17 -1.7096 -3.8747 -1.9574 26 6 0.3616 -2.5135 -0.8712 27 1 -0.3634 -0.0770 -1.0247 28 1 -0.3633 -0.8489 0.5791 29 1 -0.3633 0.9261 0.4457 30 1 1.6462 2.1192 0.0041 31 1 8.0079 -4.8005 0.0018 32 1 2.6047 -3.2856 1.5416 33 1 1.2907 -5.3658 1.5426 34 1 -0.6082 -5.6261 -0.0012 35 1 0.1005 -1.7144 -1.5492 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745224780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:46 Heat of formation + Delta-G solvation = -31.217501 kcal Electronic energy + Delta-G solvation = -25475.172946 eV Core-core repulsion = 21466.001311 eV Total energy + Delta-G solvation = -4009.171634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.54706 -41.15927 -40.29851 -39.29691 -37.51889 -37.23535 -36.02002 -34.51758 -34.31624 -32.11296 -30.91330 -29.52943 -27.96858 -26.75534 -24.63183 -24.00930 -23.39300 -22.63820 -20.22644 -19.96377 -19.76669 -18.12344 -17.91050 -17.60141 -17.24877 -16.94200 -16.69661 -16.23954 -16.05162 -15.95410 -15.29711 -15.14228 -15.00915 -14.62414 -14.50987 -14.32544 -14.06846 -13.69797 -13.54471 -13.27503 -13.01148 -12.80599 -12.60398 -12.52365 -12.43087 -12.21829 -12.09807 -11.97673 -11.53330 -11.38373 -10.75387 -10.58150 -10.40758 -9.96679 -9.32394 -8.61915 -6.38728 -0.76621 -0.50118 -0.02609 0.12966 0.65894 1.09646 1.29680 1.31815 1.49200 1.58021 1.93978 2.26488 2.32384 2.41357 2.93536 3.07657 3.11393 3.22492 3.61037 3.74969 3.82985 3.91084 4.11631 4.19326 4.31967 4.42130 4.53003 4.65897 4.70951 4.86794 4.92996 4.95326 5.04328 5.09498 5.17669 5.30725 5.58591 5.72610 6.37294 6.51965 6.59302 6.80526 7.62376 8.57867 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.003705 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.230305 B = 7554.803697 C = 9453.322976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.146 3.854 3 C -0.260 4.260 4 C 0.371 3.629 5 O -0.515 6.515 6 C -0.038 4.038 7 C 0.451 3.549 8 O -0.555 6.555 9 O -0.215 6.215 10 C -0.424 4.424 11 H 0.082 0.918 12 C 0.003 3.997 13 N -0.886 5.886 14 Si 1.021 2.979 15 H -0.256 1.256 16 H -0.253 1.253 17 H -0.266 1.266 18 N -0.155 5.155 19 N -0.256 5.256 20 C 0.101 3.899 21 C -0.100 4.100 22 C -0.083 4.083 23 C -0.084 4.084 24 C -0.025 4.025 25 Cl -0.045 7.045 26 C -0.099 4.099 27 H 0.122 0.878 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.205 0.795 31 H 0.283 0.717 32 H 0.122 0.878 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.447 -5.520 0.108 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.037 3.963 3 C -0.285 4.285 4 C 0.258 3.742 5 O -0.396 6.396 6 C -0.210 4.210 7 C 0.297 3.703 8 O -0.450 6.450 9 O -0.121 6.121 10 C -0.500 4.500 11 H 0.100 0.900 12 C -0.199 4.199 13 N -0.522 5.522 14 Si 0.839 3.161 15 H -0.181 1.181 16 H -0.176 1.176 17 H -0.190 1.190 18 N 0.014 4.986 19 N -0.050 5.050 20 C 0.012 3.988 21 C -0.120 4.120 22 C -0.102 4.102 23 C -0.102 4.102 24 C -0.053 4.053 25 Cl -0.016 7.016 26 C -0.120 4.120 27 H 0.140 0.860 28 H 0.117 0.883 29 H 0.146 0.854 30 H 0.222 0.778 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.187 0.813 34 H 0.190 0.810 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.925 -5.918 0.008 26.592 hybrid contribution 1.365 0.972 -0.065 1.676 sum -24.561 -4.946 -0.057 25.054 Atomic orbital electron populations 1.21671 0.82248 1.07680 1.06592 1.22261 0.98910 0.83911 0.91205 1.22585 0.91715 1.00202 1.13951 1.19382 0.91463 0.86494 0.76863 1.90804 1.68417 1.36118 1.44255 1.24163 0.91348 0.93034 1.12453 1.20268 0.87324 0.82870 0.79821 1.90686 1.63140 1.39541 1.51601 1.83995 1.24257 1.28596 1.75216 1.21633 0.78058 0.95387 1.54935 0.90025 1.26629 1.06510 0.92594 0.94137 1.70065 1.38938 0.98485 1.44750 0.84597 0.72621 0.79079 0.79818 1.18079 1.17637 1.18983 1.71653 0.92293 1.30075 1.04618 1.42122 1.00505 1.06924 1.55406 1.17629 0.94739 0.85513 1.00902 1.21400 0.99664 0.93569 0.97409 1.21348 0.93437 0.96499 0.98882 1.21623 0.96723 0.98995 0.92876 1.20638 0.93257 0.95118 0.96266 1.98410 1.43473 1.97401 1.62315 1.21137 0.94359 0.99001 0.97487 0.85959 0.88318 0.85450 0.77835 0.90703 0.86030 0.81270 0.81047 0.81722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.19 71.24 0.58 -0.50 16 2 C 0.15 3.23 6.50 41.33 0.27 3.50 16 3 C -0.26 -7.25 9.72 22.53 0.22 -7.03 16 4 C 0.37 16.28 6.99 25.53 0.18 16.46 16 5 O -0.51 -27.01 16.43 13.45 0.22 -26.79 16 6 C -0.04 -1.86 7.04 43.95 0.31 -1.55 16 7 C 0.45 27.43 7.89 70.25 0.55 27.99 16 8 O -0.55 -36.80 14.82 26.21 0.39 -36.41 16 9 O -0.21 -13.94 9.58 11.30 0.11 -13.83 16 10 C -0.42 -27.47 9.65 67.96 0.66 -26.82 16 11 H 0.08 5.40 6.86 -2.91 -0.02 5.38 16 12 C 0.00 0.20 5.50 84.90 0.47 0.67 16 13 N -0.89 -52.80 13.67 21.64 0.30 -52.50 16 14 Si 1.02 44.50 29.55 68.60 2.03 46.53 16 15 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 16 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 N -0.16 -6.46 10.26 -44.54 -0.46 -6.92 16 19 N -0.26 -7.45 3.40 -175.81 -0.60 -8.05 16 20 C 0.10 2.27 5.11 38.18 0.20 2.46 16 21 C -0.10 -2.24 9.60 22.40 0.21 -2.03 16 22 C -0.08 -1.21 10.04 22.25 0.22 -0.98 16 23 C -0.08 -0.94 9.83 22.32 0.22 -0.72 16 24 C -0.03 -0.33 6.32 22.30 0.14 -0.18 16 25 Cl -0.05 -0.50 28.95 -2.72 -0.08 -0.58 16 26 C -0.10 -1.52 7.32 22.42 0.16 -1.36 16 27 H 0.12 0.51 6.69 -2.39 -0.02 0.50 16 28 H 0.10 0.74 6.36 -2.39 -0.02 0.72 16 29 H 0.13 0.48 8.04 -2.38 -0.02 0.47 16 30 H 0.20 3.99 8.06 -2.91 -0.02 3.97 16 31 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.12 3.31 8.01 -2.91 -0.02 3.29 16 33 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 35 H 0.17 1.84 5.87 -2.91 -0.02 1.82 16 Total: -1.00 -93.01 331.98 7.47 -85.54 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.17 Total: 3.11 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 4.39 Total: 9.90 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -0.76 Total: -67.47 kcal Atomic # 8 Polarization: -77.75 SS G_CDS: 0.72 Total: -77.03 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -93.01 7.47 -85.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745224780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.319 kcal (2) G-P(sol) polarization free energy of solvation -93.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds