Wall clock time and date at job start Tue Mar 31 2020 18:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86800 * 120.00257 * 2 1 4 4 H 1.48501 * 109.46995 * 270.00035 * 3 2 1 5 5 H 1.48505 * 109.46983 * 29.99698 * 3 2 1 6 6 H 1.48497 * 109.47674 * 150.00092 * 3 2 1 7 7 C 1.38656 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99785 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00387 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00169 * 185.05493 * 9 7 2 11 11 C 1.38881 * 120.06690 * 354.46224 * 10 9 7 12 12 C 1.38099 * 119.92892 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06803 * 0.02562 * 12 11 10 14 14 C 1.50709 * 119.93056 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46866 * 90.00207 * 14 13 12 16 16 O 1.21279 * 120.00147 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99781 * 179.97438 * 15 14 13 18 18 C 1.46501 * 119.99875 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.46956 * 180.02562 * 18 17 15 20 20 C 1.33375 * 122.72053 * 95.00364 * 19 18 17 21 21 S 1.76171 * 108.05900 * 180.02562 * 20 19 18 22 22 C 1.70968 * 90.34163 * 359.97438 * 21 20 19 23 23 O 1.35545 * 124.93997 * 180.02562 * 22 21 20 24 24 N 1.29504 * 110.11679 * 359.97438 * 22 21 20 25 25 C 1.38302 * 120.14140 * 0.25801 * 13 12 11 26 26 C 1.38100 * 120.06730 * 359.44294 * 25 13 12 27 27 H 0.96997 * 119.99937 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.03731 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.96688 * 180.02562 * 12 11 10 30 30 H 1.08999 * 109.47057 * 330.00322 * 14 13 12 31 31 H 1.09003 * 109.46875 * 210.00451 * 14 13 12 32 32 H 0.96997 * 119.99777 * 0.02562 * 17 15 14 33 33 H 1.08999 * 109.46966 * 60.00345 * 18 17 15 34 34 H 1.08991 * 109.47376 * 300.00053 * 18 17 15 35 35 H 1.08002 * 125.96916 * 0.04549 * 20 19 18 36 36 H 0.96701 * 114.00289 * 269.97295 * 23 22 21 37 37 H 1.08001 * 119.96724 * 179.70766 * 25 13 12 38 38 H 1.07997 * 120.03906 * 180.27133 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9735 -2.4056 -0.1072 11 6 3.2235 -3.5744 -0.0952 12 6 3.8535 -4.7985 -0.2038 13 6 5.2298 -4.8612 -0.3239 14 6 5.9142 -6.1987 -0.4417 15 6 6.0217 -6.5816 -1.8953 16 8 5.5861 -5.8411 -2.7513 17 7 6.6030 -7.7465 -2.2440 18 6 6.7071 -8.1190 -3.6570 19 6 7.3916 -9.4564 -3.7748 20 6 6.7193 -10.6047 -3.8664 21 16 7.8906 -11.9153 -3.9849 22 6 9.1744 -10.7893 -3.9003 23 8 10.4911 -11.1090 -3.9374 24 7 8.7057 -9.5865 -3.7967 25 6 5.9800 -3.6993 -0.3303 26 6 5.3554 -2.4719 -0.2282 27 1 -0.4850 0.8400 -0.0004 28 1 2.1487 -3.5260 -0.0010 29 1 3.2708 -5.7077 -0.1950 30 1 5.3334 -6.9521 0.0905 31 1 6.9121 -6.1357 -0.0077 32 1 6.9518 -8.3385 -1.5594 33 1 7.2872 -7.3654 -4.1896 34 1 5.7091 -8.1826 -4.0905 35 1 5.6447 -10.7123 -3.8681 36 1 10.8802 -11.2753 -3.0679 37 1 7.0550 -3.7518 -0.4195 38 1 5.9413 -1.5647 -0.2376 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760172848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:26 Heat of formation + Delta-G solvation = -21.155150 kcal Electronic energy + Delta-G solvation = -24100.759647 eV Core-core repulsion = 20229.901150 eV Total energy + Delta-G solvation = -3870.858497 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76641 -39.73140 -38.88904 -38.00189 -36.64401 -34.69593 -32.48836 -31.73555 -30.65818 -30.18478 -27.87456 -26.39173 -24.98264 -24.35637 -22.05403 -21.11808 -20.75437 -20.08732 -19.78234 -18.00059 -17.84398 -17.26703 -16.99209 -16.45278 -16.27404 -15.46268 -14.92086 -14.74886 -14.52819 -14.16611 -14.06742 -13.88462 -13.71861 -13.48625 -13.34158 -13.22330 -12.63528 -12.42960 -12.29972 -12.16518 -11.93073 -11.58877 -11.26163 -10.90185 -10.72063 -10.63199 -10.19941 -10.11606 -10.04604 -9.90645 -9.33859 -9.33795 -9.22287 -8.81710 -8.18490 -7.25910 -6.37463 -4.03657 -0.01760 0.49968 1.04494 1.89266 2.20964 2.23622 2.74031 2.97059 3.24930 3.28873 3.33101 3.44043 4.13590 4.27781 4.50028 4.54361 4.68931 4.89600 4.94735 5.12899 5.15499 5.24373 5.33140 5.35929 5.54132 5.63790 5.70172 5.80632 6.18217 6.22302 6.38144 6.49230 6.61690 6.84587 7.06149 7.07300 7.27087 7.35453 7.39511 7.66778 7.85082 8.08579 8.27215 8.98077 9.61100 10.70265 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.035016 B = 0.001773 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.434510 B =15792.989075 C =16082.411765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.162 4.162 14 C -0.080 4.080 15 C 0.511 3.489 16 O -0.517 6.517 17 N -0.735 5.735 18 C 0.196 3.804 19 C 0.066 3.934 20 C -0.232 4.232 21 S 0.136 5.864 22 C 0.225 3.775 23 O -0.436 6.436 24 N -0.475 5.475 25 C -0.062 4.062 26 C -0.191 4.191 27 H 0.279 0.721 28 H 0.133 0.867 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.399 0.601 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.187 0.813 36 H 0.407 0.593 37 H 0.110 0.890 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.394 -26.647 -3.752 32.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.110 3.890 11 C -0.239 4.239 12 C -0.076 4.076 13 C -0.163 4.163 14 C -0.120 4.120 15 C 0.298 3.702 16 O -0.391 6.391 17 N -0.390 5.390 18 C 0.070 3.930 19 C -0.066 4.066 20 C -0.372 4.372 21 S 0.385 5.615 22 C -0.093 4.093 23 O -0.243 6.243 24 N -0.200 5.200 25 C -0.080 4.080 26 C -0.210 4.210 27 H 0.089 0.911 28 H 0.150 0.850 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.232 0.768 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.205 0.795 36 H 0.265 0.735 37 H 0.128 0.872 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.316 -26.338 -5.032 31.919 hybrid contribution 0.145 0.967 0.715 1.211 sum 17.461 -25.371 -4.317 31.100 Atomic orbital electron populations 1.69645 1.05550 1.28419 1.48250 1.24466 0.95036 0.98818 0.95744 0.86178 0.80299 0.81428 0.78969 1.19890 1.20837 1.18376 1.20772 0.76924 0.96618 1.52052 0.87632 1.83570 1.22597 1.25809 1.80358 1.19125 0.91712 0.85480 0.92698 1.21222 1.01033 0.91807 1.09800 1.20560 0.93234 0.96723 0.97118 1.18695 0.93563 0.92532 1.11506 1.20417 1.02341 0.97045 0.92172 1.21042 0.76929 0.80023 0.92222 1.90766 1.46044 1.50288 1.52007 1.46035 1.62962 1.22631 1.07333 1.19693 0.99602 0.89614 0.84087 1.19904 0.86981 0.96576 1.03141 1.26932 1.05202 0.94087 1.10966 1.84349 0.98117 1.11521 1.67559 1.24412 0.90358 0.90028 1.04476 1.84887 1.16378 1.88099 1.34949 1.66345 1.14154 1.22736 1.16812 1.20411 0.98179 0.91374 0.98019 1.20153 0.91956 0.97750 1.11156 0.91109 0.84966 0.87520 0.88822 0.88836 0.76763 0.89585 0.89401 0.79538 0.73471 0.87175 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.96 55.48 0.77 -25.06 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 22.14 28.62 -169.99 -4.86 17.28 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.39 -11.18 9.95 30.89 0.31 -10.88 16 8 H 0.11 3.10 5.44 -52.48 -0.29 2.82 16 9 O -0.22 -5.93 8.59 0.05 0.00 -5.93 16 10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.22 -4.90 9.17 -39.39 -0.36 -5.26 16 12 C -0.06 -1.08 9.69 -39.61 -0.38 -1.47 16 13 C -0.16 -2.72 4.38 -104.57 -0.46 -3.18 16 14 C -0.08 -0.94 5.83 -29.03 -0.17 -1.11 16 15 C 0.51 6.74 7.82 -10.99 -0.09 6.66 16 16 O -0.52 -9.45 16.03 5.56 0.09 -9.36 16 17 N -0.73 -6.98 5.55 -61.48 -0.34 -7.32 16 18 C 0.20 1.86 6.11 -5.19 -0.03 1.83 16 19 C 0.07 0.54 6.11 -84.19 -0.51 0.03 16 20 C -0.23 -1.38 11.09 29.03 0.32 -1.06 16 21 S 0.14 0.71 23.22 -107.50 -2.50 -1.79 16 22 C 0.23 1.66 8.64 51.78 0.45 2.10 16 23 O -0.44 -2.53 13.64 -18.33 -0.25 -2.78 16 24 N -0.47 -4.50 10.58 -12.15 -0.13 -4.63 16 25 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 26 C -0.19 -3.96 9.99 -39.39 -0.39 -4.35 16 27 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.13 3.08 5.64 -52.49 -0.30 2.79 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.40 2.74 8.46 -40.82 -0.35 2.40 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.41 0.20 9.06 45.56 0.41 0.61 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -36.27 353.65 -6.97 -43.24 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -3.02 Total: 3.87 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -2.06 Total: -12.85 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.31 Total: -37.00 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.16 Total: -18.07 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.86 Total: 17.28 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.50 Total: -1.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.27 -6.97 -43.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760172848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.084 kcal (2) G-P(sol) polarization free energy of solvation -36.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds