Wall clock time and date at job start Tue Mar 31 2020 18:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86800 * 120.00257 * 2 1 4 4 H 1.48501 * 109.46995 * 270.00035 * 3 2 1 5 5 H 1.48505 * 109.46983 * 29.99698 * 3 2 1 6 6 H 1.48497 * 109.47674 * 150.00092 * 3 2 1 7 7 C 1.38656 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99785 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00387 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00169 * 185.05493 * 9 7 2 11 11 C 1.38881 * 120.06690 * 354.46224 * 10 9 7 12 12 C 1.38099 * 119.92892 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06803 * 0.02562 * 12 11 10 14 14 C 1.50709 * 119.93056 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46866 * 90.00207 * 14 13 12 16 16 O 1.21279 * 120.00147 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99781 * 179.97438 * 15 14 13 18 18 C 1.46501 * 119.99875 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.46956 * 180.02562 * 18 17 15 20 20 C 1.33375 * 122.72053 * 95.00364 * 19 18 17 21 21 S 1.76171 * 108.05900 * 180.02562 * 20 19 18 22 22 C 1.70968 * 90.34163 * 359.97438 * 21 20 19 23 23 O 1.35545 * 124.93997 * 180.02562 * 22 21 20 24 24 N 1.29504 * 110.11679 * 359.97438 * 22 21 20 25 25 C 1.38302 * 120.14140 * 0.25801 * 13 12 11 26 26 C 1.38100 * 120.06730 * 359.44294 * 25 13 12 27 27 H 0.96997 * 119.99937 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.03731 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.96688 * 180.02562 * 12 11 10 30 30 H 1.08999 * 109.47057 * 330.00322 * 14 13 12 31 31 H 1.09003 * 109.46875 * 210.00451 * 14 13 12 32 32 H 0.96997 * 119.99777 * 0.02562 * 17 15 14 33 33 H 1.08999 * 109.46966 * 60.00345 * 18 17 15 34 34 H 1.08991 * 109.47376 * 300.00053 * 18 17 15 35 35 H 1.08002 * 125.96916 * 0.04549 * 20 19 18 36 36 H 0.96701 * 114.00289 * 269.97295 * 23 22 21 37 37 H 1.08001 * 119.96724 * 179.70766 * 25 13 12 38 38 H 1.07997 * 120.03906 * 180.27133 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9735 -2.4056 -0.1072 11 6 3.2235 -3.5744 -0.0952 12 6 3.8535 -4.7985 -0.2038 13 6 5.2298 -4.8612 -0.3239 14 6 5.9142 -6.1987 -0.4417 15 6 6.0217 -6.5816 -1.8953 16 8 5.5861 -5.8411 -2.7513 17 7 6.6030 -7.7465 -2.2440 18 6 6.7071 -8.1190 -3.6570 19 6 7.3916 -9.4564 -3.7748 20 6 6.7193 -10.6047 -3.8664 21 16 7.8906 -11.9153 -3.9849 22 6 9.1744 -10.7893 -3.9003 23 8 10.4911 -11.1090 -3.9374 24 7 8.7057 -9.5865 -3.7967 25 6 5.9800 -3.6993 -0.3303 26 6 5.3554 -2.4719 -0.2282 27 1 -0.4850 0.8400 -0.0004 28 1 2.1487 -3.5260 -0.0010 29 1 3.2708 -5.7077 -0.1950 30 1 5.3334 -6.9521 0.0905 31 1 6.9121 -6.1357 -0.0077 32 1 6.9518 -8.3385 -1.5594 33 1 7.2872 -7.3654 -4.1896 34 1 5.7091 -8.1826 -4.0905 35 1 5.6447 -10.7123 -3.8681 36 1 10.8802 -11.2753 -3.0679 37 1 7.0550 -3.7518 -0.4195 38 1 5.9413 -1.5647 -0.2376 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760172848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:26 Heat of formation + Delta-G solvation = -51.805155 kcal Electronic energy + Delta-G solvation = -24102.088731 eV Core-core repulsion = 20229.901150 eV Total energy + Delta-G solvation = -3872.187581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39875 -40.98798 -40.31650 -38.53754 -38.22367 -35.61354 -34.51201 -33.08092 -31.79611 -31.37908 -28.92911 -27.67028 -26.53723 -25.09978 -23.69416 -22.49787 -21.42964 -21.10280 -20.27390 -19.80636 -19.10552 -18.55066 -17.88422 -17.27573 -16.92674 -16.75543 -16.36511 -15.95524 -15.71157 -15.58489 -15.35767 -15.13140 -14.86666 -14.58509 -14.39588 -14.24027 -14.14275 -14.05951 -13.88080 -13.03846 -12.79326 -12.72723 -12.52848 -12.44553 -12.39726 -12.28900 -11.92287 -11.26644 -11.02211 -10.85807 -10.69169 -10.51042 -10.11873 -9.86015 -9.77093 -8.96633 -8.49841 -6.22059 -0.46986 0.06713 0.57164 0.60320 0.63471 1.30278 1.34192 1.37017 1.51463 1.73612 2.28211 2.40793 2.56895 2.81137 3.07542 3.20174 3.63159 3.85963 3.99813 4.05996 4.15840 4.20902 4.28518 4.48967 4.57347 4.60265 4.67320 4.71829 4.83690 4.89015 5.00313 5.27319 5.38080 5.39807 5.58289 5.75567 5.81179 5.92384 6.26167 6.27160 6.57656 6.61779 6.84528 7.33426 7.59689 8.61890 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.035016 B = 0.001773 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.434510 B =15792.989075 C =16082.411765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.117 3.883 11 C -0.238 4.238 12 C -0.063 4.063 13 C -0.137 4.137 14 C -0.078 4.078 15 C 0.514 3.486 16 O -0.578 6.578 17 N -0.713 5.713 18 C 0.199 3.801 19 C 0.049 3.951 20 C -0.225 4.225 21 S 0.191 5.809 22 C 0.211 3.789 23 O -0.448 6.448 24 N -0.512 5.512 25 C -0.061 4.061 26 C -0.195 4.195 27 H 0.285 0.715 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.415 0.585 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.209 0.791 36 H 0.427 0.573 37 H 0.151 0.849 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.200 -29.650 -3.456 36.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.098 0.902 9 O -0.155 6.155 10 C 0.068 3.932 11 C -0.258 4.258 12 C -0.081 4.081 13 C -0.138 4.138 14 C -0.117 4.117 15 C 0.301 3.699 16 O -0.456 6.456 17 N -0.367 5.367 18 C 0.073 3.927 19 C -0.083 4.083 20 C -0.366 4.366 21 S 0.441 5.559 22 C -0.106 4.106 23 O -0.259 6.259 24 N -0.240 5.240 25 C -0.078 4.078 26 C -0.214 4.214 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.252 0.748 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.226 0.774 36 H 0.289 0.711 37 H 0.169 0.831 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 20.187 -29.441 -4.700 36.005 hybrid contribution -0.487 1.443 0.568 1.625 sum 19.700 -27.998 -4.132 34.483 Atomic orbital electron populations 1.69727 1.06835 1.29556 1.50296 1.25294 0.95940 1.02168 0.95599 0.85206 0.78819 0.77408 0.79181 1.19339 1.18908 1.18714 1.20714 0.78151 0.96115 1.52561 0.90244 1.83509 1.21226 1.27504 1.83240 1.19687 0.93249 0.85133 0.95117 1.21263 1.00092 0.93333 1.11076 1.20927 0.94679 0.96195 0.96316 1.19304 0.92883 0.95083 1.06548 1.20546 1.04528 0.94696 0.91919 1.21171 0.76314 0.80237 0.92131 1.90770 1.48971 1.52316 1.53572 1.45820 1.61228 1.21621 1.08040 1.19586 0.99547 0.90024 0.83572 1.19625 0.86928 0.96375 1.05336 1.27229 1.06520 0.93884 1.08933 1.84200 0.96105 1.09591 1.66029 1.24595 0.91247 0.90358 1.04368 1.84840 1.16064 1.88018 1.36929 1.66280 1.14945 1.24383 1.18343 1.20948 1.00339 0.90345 0.96215 1.20498 0.90625 0.99797 1.10448 0.90584 0.87507 0.84609 0.85161 0.84987 0.74808 0.91953 0.89137 0.77424 0.71083 0.83107 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.63 13.96 21.61 0.30 -56.33 16 2 C 0.01 0.49 5.49 84.83 0.47 0.95 16 3 Si 0.97 47.10 28.62 68.60 1.96 49.06 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.40 -24.50 9.95 67.92 0.68 -23.82 16 8 H 0.08 5.10 5.44 -2.91 -0.02 5.09 16 9 O -0.25 -14.11 8.59 -22.75 -0.20 -14.31 16 10 C 0.12 5.81 6.65 22.58 0.15 5.96 16 11 C -0.24 -11.09 9.17 22.39 0.21 -10.88 16 12 C -0.06 -2.28 9.69 22.25 0.22 -2.06 16 13 C -0.14 -4.18 4.38 -19.83 -0.09 -4.27 16 14 C -0.08 -1.44 5.83 29.10 0.17 -1.27 16 15 C 0.51 11.90 7.82 87.66 0.69 12.59 16 16 O -0.58 -20.26 16.03 -3.03 -0.05 -20.31 16 17 N -0.71 -11.33 5.55 -466.80 -2.59 -13.92 16 18 C 0.20 3.48 6.11 85.63 0.52 4.00 16 19 C 0.05 0.70 6.11 41.42 0.25 0.95 16 20 C -0.23 -2.01 11.09 66.72 0.74 -1.27 16 21 S 0.19 1.41 23.22 -56.49 -1.31 0.09 16 22 C 0.21 2.67 8.64 130.59 1.13 3.79 16 23 O -0.45 -4.35 13.64 -88.50 -1.21 -5.56 16 24 N -0.51 -8.85 10.58 -306.66 -3.24 -12.09 16 25 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 26 C -0.19 -7.97 9.99 22.39 0.22 -7.75 16 27 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 28 H 0.11 5.43 5.64 -2.91 -0.02 5.41 16 29 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 30 H 0.13 1.60 8.08 -2.39 -0.02 1.58 16 31 H 0.13 1.58 8.08 -2.39 -0.02 1.57 16 32 H 0.42 4.00 8.46 -92.71 -0.78 3.21 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.21 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.43 -0.47 9.06 -74.06 -0.67 -1.14 16 37 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 38 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -85.09 353.65 -1.08 -86.17 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -0.31 Total: 12.03 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 5.56 Total: -24.84 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -5.53 Total: -82.34 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -1.45 Total: -40.18 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.96 Total: 49.06 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.31 Total: 0.09 kcal Total: -85.09 -1.08 -86.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760172848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.360 kcal (2) G-P(sol) polarization free energy of solvation -85.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds