Wall clock time and date at job start Tue Mar 31 2020 18:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99617 * 2 1 4 4 H 1.48506 * 109.46774 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46934 * 299.99475 * 3 2 1 6 6 H 1.48496 * 109.47176 * 59.99965 * 3 2 1 7 7 C 1.37873 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00297 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99669 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46969 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00073 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00038 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00051 * 180.02562 * 11 10 9 14 14 N 1.46501 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.40032 * 120.00049 * 179.97438 * 14 13 11 16 16 C 1.38711 * 120.07961 * 359.97438 * 15 14 13 17 17 C 1.38220 * 119.99379 * 180.02562 * 16 15 14 18 18 C 1.38357 * 120.14601 * 359.97438 * 17 16 15 19 19 Cl 1.73610 * 119.92116 * 180.02562 * 18 17 16 20 20 C 1.38375 * 120.15655 * 359.76453 * 18 17 16 21 21 C 1.38505 * 120.00068 * 0.51008 * 20 18 17 22 22 O 1.36011 * 120.06974 * 179.74415 * 21 20 18 23 23 C 1.42903 * 117.00244 * 359.72606 * 22 21 20 24 24 F 1.39904 * 109.46926 * 59.99665 * 23 22 21 25 25 F 1.39901 * 109.46899 * 300.00209 * 23 22 21 26 26 H 0.97005 * 120.00336 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47449 * 60.00027 * 9 7 2 28 28 H 1.08996 * 109.47528 * 299.99862 * 9 7 2 29 29 H 0.97000 * 120.00076 * 0.02562 * 10 9 7 30 30 H 1.08993 * 109.47604 * 59.99509 * 13 11 10 31 31 H 1.09007 * 109.46678 * 299.99303 * 13 11 10 32 32 H 0.97006 * 119.99628 * 359.97438 * 14 13 11 33 33 H 1.08000 * 119.99941 * 0.04509 * 16 15 14 34 34 H 1.08001 * 119.92835 * 179.97438 * 17 16 15 35 35 H 1.07993 * 119.99747 * 180.25468 * 20 18 17 36 36 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0287 0.0006 14 7 2.0007 -7.2975 0.0005 15 6 2.7009 -8.5102 0.0004 16 6 4.0880 -8.5120 -0.0001 17 6 4.7774 -9.7101 -0.0007 18 6 4.0869 -10.9090 -0.0003 19 17 4.9587 -12.4104 -0.0003 20 6 2.7032 -10.9143 0.0057 21 6 2.0060 -9.7175 0.0005 22 8 0.6459 -9.7211 0.0011 23 6 0.0005 -10.9961 0.0011 24 9 0.3788 -11.7103 1.1430 25 9 0.3778 -11.7097 -1.1415 26 1 -0.4851 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8902 29 1 3.1568 -3.4354 0.0009 30 1 3.3592 -5.9711 0.8909 31 1 3.3604 -5.9708 -0.8890 32 1 1.0307 -7.2975 0.0004 33 1 4.6293 -7.5775 0.0003 34 1 5.8574 -9.7103 -0.0015 35 1 2.1669 -11.8517 0.0102 36 1 -1.0805 -10.8561 0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762533878.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:58 Heat of formation + Delta-G solvation = -163.759918 kcal Electronic energy + Delta-G solvation = -25376.409783 eV Core-core repulsion = 20943.094243 eV Total energy + Delta-G solvation = -4433.315540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.62893 -47.61426 -40.48935 -39.11193 -37.86254 -36.69069 -35.17072 -34.30287 -32.47448 -30.73361 -30.13640 -27.86342 -26.40583 -26.05833 -23.13386 -22.56970 -21.91601 -20.00331 -19.37204 -18.69128 -18.18834 -17.70030 -16.89279 -16.44035 -16.19210 -15.53331 -15.52986 -15.20647 -14.93319 -14.91547 -14.49843 -14.29170 -14.14368 -13.95675 -13.61477 -13.37054 -13.33448 -13.03325 -12.94448 -12.64276 -12.25408 -12.05734 -11.93032 -11.58920 -11.47740 -11.07330 -11.03629 -10.97771 -10.40817 -10.05652 -9.48950 -9.35241 -9.01436 -8.84873 -8.07498 -7.46467 -6.25072 -4.32690 0.97714 1.10301 2.00565 2.26349 3.08063 3.08375 3.18461 3.19234 3.26148 3.28755 3.38522 3.96325 4.02945 4.28706 4.35012 4.47361 4.74291 4.83309 5.03852 5.11496 5.16310 5.26120 5.32797 5.35925 5.52304 5.81932 6.02875 6.19631 6.45987 7.02786 7.17519 7.23057 7.38794 7.54273 7.63619 7.86366 8.42282 8.63151 8.87748 9.34108 10.85060 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.002212 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.484092 B =12653.534169 C =13859.918638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.249 3.751 10 N -0.705 5.705 11 C 0.493 3.507 12 O -0.551 6.551 13 C 0.100 3.900 14 N -0.720 5.720 15 C 0.227 3.773 16 C -0.167 4.167 17 C -0.076 4.076 18 C -0.066 4.066 19 Cl -0.076 7.076 20 C -0.132 4.132 21 C 0.038 3.962 22 O -0.315 6.315 23 C 0.413 3.587 24 F -0.199 7.199 25 F -0.199 7.199 26 H 0.266 0.734 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.394 0.606 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.419 0.581 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.113 -23.348 0.008 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.129 3.871 10 N -0.353 5.353 11 C 0.277 3.723 12 O -0.430 6.430 13 C -0.028 4.028 14 N -0.352 5.352 15 C 0.121 3.879 16 C -0.191 4.191 17 C -0.095 4.095 18 C -0.095 4.095 19 Cl -0.048 7.048 20 C -0.152 4.152 21 C -0.009 4.009 22 O -0.233 6.233 23 C 0.322 3.678 24 F -0.181 7.181 25 F -0.181 7.181 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.226 0.774 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.258 0.742 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.131 -23.138 0.008 23.937 hybrid contribution 0.644 0.568 0.001 0.859 sum 6.774 -22.570 0.009 23.565 Atomic orbital electron populations 1.69979 1.06141 1.27347 1.48718 1.24960 0.94933 0.99553 0.94576 0.86340 0.79815 0.82826 0.77814 1.19582 1.20754 1.20748 1.21234 0.93337 0.90303 1.53467 0.91721 1.19174 0.88231 0.81787 0.97944 1.46416 1.11490 1.05804 1.71585 1.20274 0.89346 0.84636 0.78086 1.90671 1.16649 1.84494 1.51208 1.21194 0.94818 0.83473 1.03304 1.44446 1.09750 1.00798 1.80194 1.17211 0.90971 0.83689 0.96025 1.20492 0.90744 0.98866 1.08980 1.20776 1.00316 0.89865 0.98586 1.20221 0.91256 0.87131 1.10916 1.98348 1.76295 1.32793 1.97319 1.21074 0.93681 0.97054 1.03394 1.17993 0.81183 0.92718 1.09043 1.86611 1.17952 1.29404 1.89351 1.23370 0.97438 0.75188 0.71773 1.93099 1.93399 1.79471 1.52147 1.93099 1.93426 1.79494 1.52085 0.92402 0.95333 0.95324 0.77351 0.89267 0.89265 0.74156 0.83937 0.84578 0.84101 0.80122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.36 13.29 55.43 0.74 -24.62 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.55 -14.15 9.28 -34.44 -0.32 -14.47 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.26 5.43 -5.19 -0.03 6.23 16 10 N -0.70 -13.48 5.55 -61.47 -0.34 -13.82 16 11 C 0.49 8.83 7.90 -10.99 -0.09 8.74 16 12 O -0.55 -12.15 15.67 5.55 0.09 -12.07 16 13 C 0.10 1.24 5.40 -5.20 -0.03 1.22 16 14 N -0.72 -9.56 5.71 -59.66 -0.34 -9.90 16 15 C 0.23 2.75 6.67 -83.54 -0.56 2.20 16 16 C -0.17 -1.68 9.31 -39.41 -0.37 -2.05 16 17 C -0.08 -0.73 9.82 -39.54 -0.39 -1.12 16 18 C -0.07 -0.72 6.32 -39.49 -0.25 -0.97 16 19 Cl -0.08 -0.76 28.95 -51.86 -1.50 -2.26 16 20 C -0.13 -1.52 8.04 -39.43 -0.32 -1.84 16 21 C 0.04 0.46 6.50 -39.09 -0.25 0.21 16 22 O -0.32 -3.59 9.68 -19.78 -0.19 -3.78 16 23 C 0.41 3.40 5.98 101.05 0.60 4.01 16 24 F -0.20 -1.90 15.57 2.25 0.04 -1.87 16 25 F -0.20 -1.90 15.60 2.25 0.04 -1.87 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.39 6.22 8.32 -40.82 -0.34 5.88 16 30 H 0.09 0.91 7.95 -51.93 -0.41 0.49 16 31 H 0.09 0.91 7.95 -51.93 -0.41 0.50 16 32 H 0.42 6.30 6.80 -40.82 -0.28 6.03 16 33 H 0.14 1.12 6.74 -52.49 -0.35 0.77 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.14 1.57 5.09 -52.49 -0.27 1.30 16 36 H 0.18 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -32.01 338.21 -6.78 -38.79 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.29 Total: 7.33 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.09 Total: 3.77 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.05 Total: -48.34 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.10 Total: -15.84 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.07 Total: -3.73 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.01 -6.78 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762533878.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.970 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds