Wall clock time and date at job start Tue Mar 31 2020 18:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99617 * 2 1 4 4 H 1.48506 * 109.46774 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46934 * 299.99475 * 3 2 1 6 6 H 1.48496 * 109.47176 * 59.99965 * 3 2 1 7 7 C 1.37873 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00297 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99669 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46969 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00073 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00038 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00051 * 180.02562 * 11 10 9 14 14 N 1.46501 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.40032 * 120.00049 * 179.97438 * 14 13 11 16 16 C 1.38711 * 120.07961 * 359.97438 * 15 14 13 17 17 C 1.38220 * 119.99379 * 180.02562 * 16 15 14 18 18 C 1.38357 * 120.14601 * 359.97438 * 17 16 15 19 19 Cl 1.73610 * 119.92116 * 180.02562 * 18 17 16 20 20 C 1.38375 * 120.15655 * 359.76453 * 18 17 16 21 21 C 1.38505 * 120.00068 * 0.51008 * 20 18 17 22 22 O 1.36011 * 120.06974 * 179.74415 * 21 20 18 23 23 C 1.42903 * 117.00244 * 359.72606 * 22 21 20 24 24 F 1.39904 * 109.46926 * 59.99665 * 23 22 21 25 25 F 1.39901 * 109.46899 * 300.00209 * 23 22 21 26 26 H 0.97005 * 120.00336 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47449 * 60.00027 * 9 7 2 28 28 H 1.08996 * 109.47528 * 299.99862 * 9 7 2 29 29 H 0.97000 * 120.00076 * 0.02562 * 10 9 7 30 30 H 1.08993 * 109.47604 * 59.99509 * 13 11 10 31 31 H 1.09007 * 109.46678 * 299.99303 * 13 11 10 32 32 H 0.97006 * 119.99628 * 359.97438 * 14 13 11 33 33 H 1.08000 * 119.99941 * 0.04509 * 16 15 14 34 34 H 1.08001 * 119.92835 * 179.97438 * 17 16 15 35 35 H 1.07993 * 119.99747 * 180.25468 * 20 18 17 36 36 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0287 0.0006 14 7 2.0007 -7.2975 0.0005 15 6 2.7009 -8.5102 0.0004 16 6 4.0880 -8.5120 -0.0001 17 6 4.7774 -9.7101 -0.0007 18 6 4.0869 -10.9090 -0.0003 19 17 4.9587 -12.4104 -0.0003 20 6 2.7032 -10.9143 0.0057 21 6 2.0060 -9.7175 0.0005 22 8 0.6459 -9.7211 0.0011 23 6 0.0005 -10.9961 0.0011 24 9 0.3788 -11.7103 1.1430 25 9 0.3778 -11.7097 -1.1415 26 1 -0.4851 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8902 29 1 3.1568 -3.4354 0.0009 30 1 3.3592 -5.9711 0.8909 31 1 3.3604 -5.9708 -0.8890 32 1 1.0307 -7.2975 0.0004 33 1 4.6293 -7.5775 0.0003 34 1 5.8574 -9.7103 -0.0015 35 1 2.1669 -11.8517 0.0102 36 1 -1.0805 -10.8561 0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762533878.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:58 Heat of formation + Delta-G solvation = -186.734738 kcal Electronic energy + Delta-G solvation = -25377.406046 eV Core-core repulsion = 20943.094243 eV Total energy + Delta-G solvation = -4434.311803 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.32936 -48.32413 -41.35905 -40.53872 -38.67359 -37.54810 -36.36001 -35.85907 -34.38676 -31.52527 -31.20306 -29.46243 -27.36817 -27.08102 -24.67154 -23.60026 -22.92559 -21.47505 -20.23965 -19.51421 -18.97594 -18.90262 -18.06379 -17.65819 -17.17766 -16.87996 -16.74574 -16.71981 -15.94491 -15.83550 -15.78853 -15.08893 -15.05935 -14.82293 -14.72156 -14.60987 -14.28293 -14.12485 -13.93604 -13.87669 -13.65130 -13.45702 -13.05607 -12.88766 -12.76084 -12.36868 -12.35586 -12.21701 -11.84698 -11.45646 -10.92437 -10.91639 -10.81982 -9.88358 -9.80999 -8.34991 -8.29197 -6.45273 0.17201 0.27269 1.19908 1.45066 1.45372 1.57505 1.58896 1.64691 2.01818 2.38042 2.53413 2.57491 2.71261 3.06598 3.50289 3.67006 3.68132 3.80348 4.01101 4.05776 4.25654 4.33369 4.41437 4.56461 4.71097 5.04500 5.10225 5.23847 5.24065 5.45191 5.46213 5.60171 5.68657 5.84167 6.19220 6.55403 6.66183 6.84391 7.23226 7.41645 8.83043 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.002212 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.484092 B =12653.534169 C =13859.918638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.699 5.699 11 C 0.490 3.510 12 O -0.598 6.598 13 C 0.116 3.884 14 N -0.733 5.733 15 C 0.210 3.790 16 C -0.159 4.159 17 C -0.073 4.073 18 C -0.074 4.074 19 Cl -0.072 7.072 20 C -0.142 4.142 21 C 0.023 3.977 22 O -0.331 6.331 23 C 0.407 3.593 24 F -0.208 7.208 25 F -0.208 7.208 26 H 0.268 0.732 27 H -0.011 1.011 28 H -0.011 1.011 29 H 0.413 0.587 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.407 0.593 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.138 0.862 36 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.061 -23.317 0.009 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.105 0.895 9 C 0.142 3.858 10 N -0.349 5.349 11 C 0.277 3.723 12 O -0.480 6.480 13 C -0.011 4.011 14 N -0.364 5.364 15 C 0.105 3.895 16 C -0.182 4.182 17 C -0.092 4.092 18 C -0.103 4.103 19 Cl -0.043 7.043 20 C -0.162 4.162 21 C -0.024 4.024 22 O -0.249 6.249 23 C 0.317 3.683 24 F -0.190 7.190 25 F -0.190 7.190 26 H 0.077 0.923 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.250 0.750 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.244 0.756 33 H 0.188 0.812 34 H 0.180 0.820 35 H 0.156 0.844 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 9.156 -23.159 0.008 24.903 hybrid contribution -0.300 0.420 0.000 0.516 sum 8.856 -22.738 0.009 24.402 Atomic orbital electron populations 1.70139 1.08280 1.28470 1.50157 1.26052 0.95741 1.03917 0.93980 0.85132 0.79254 0.77450 0.77518 1.17392 1.20696 1.20683 1.21657 0.94457 0.90420 1.52540 0.89460 1.18572 0.88691 0.84226 0.94270 1.46076 1.11574 1.05140 1.72135 1.21261 0.89729 0.85309 0.75978 1.90654 1.19329 1.85197 1.52778 1.21220 0.93042 0.80505 1.06328 1.44451 1.09264 1.01380 1.81341 1.17449 0.91831 0.83101 0.97138 1.20838 0.89866 1.00170 1.07296 1.21082 1.01590 0.89119 0.97438 1.20445 0.91209 0.87943 1.10689 1.98349 1.76030 1.32654 1.97282 1.21116 0.94198 0.96849 1.04078 1.18236 0.81696 0.93135 1.09381 1.86602 1.17833 1.31125 1.89390 1.24134 0.99006 0.74109 0.71003 1.93074 1.93635 1.79643 1.52666 1.93074 1.93662 1.79667 1.52610 0.92317 0.99308 0.99296 0.75004 0.85980 0.85973 0.75554 0.81195 0.81995 0.84394 0.75700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.84 13.29 21.45 0.28 -54.55 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.98 40.90 29.54 68.60 2.03 42.93 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.55 -28.58 9.28 25.60 0.24 -28.34 16 8 H 0.09 4.02 7.60 -2.91 -0.02 3.99 16 9 C 0.27 13.76 5.43 85.63 0.46 14.23 16 10 N -0.70 -26.37 5.55 -466.78 -2.59 -28.96 16 11 C 0.49 17.34 7.90 87.66 0.69 18.03 16 12 O -0.60 -27.21 15.67 -3.05 -0.05 -27.25 16 13 C 0.12 2.56 5.40 85.63 0.46 3.02 16 14 N -0.73 -18.52 5.71 -342.66 -1.96 -20.47 16 15 C 0.21 4.74 6.67 38.20 0.25 4.99 16 16 C -0.16 -2.68 9.31 22.38 0.21 -2.47 16 17 C -0.07 -1.19 9.82 22.29 0.22 -0.97 16 18 C -0.07 -1.48 6.32 22.33 0.14 -1.34 16 19 Cl -0.07 -1.33 28.95 -2.72 -0.08 -1.41 16 20 C -0.14 -3.19 8.04 22.37 0.18 -3.01 16 21 C 0.02 0.54 6.50 22.59 0.15 0.69 16 22 O -0.33 -7.55 9.68 -93.68 -0.91 -8.45 16 23 C 0.41 6.55 5.98 113.37 0.68 7.23 16 24 F -0.21 -3.95 15.57 44.97 0.70 -3.25 16 25 F -0.21 -3.95 15.60 44.97 0.70 -3.25 16 26 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 27 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H 0.41 12.13 8.32 -92.71 -0.77 11.35 16 30 H 0.12 1.96 7.95 -2.39 -0.02 1.94 16 31 H 0.12 1.96 7.95 -2.38 -0.02 1.94 16 32 H 0.41 12.35 6.80 -92.70 -0.63 11.72 16 33 H 0.17 1.84 6.74 -2.91 -0.02 1.82 16 34 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.14 3.07 5.09 -2.91 -0.01 3.05 16 36 H 0.23 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -73.08 338.21 2.05 -71.02 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.23 Total: 20.98 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 4.15 Total: 12.67 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -4.26 Total: -103.99 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.95 Total: -35.71 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 1.40 Total: -6.49 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -73.08 2.05 -71.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762533878.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.712 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds