Wall clock time and date at job start Tue Mar 31 2020 17:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.47080 * 2 1 4 4 C 1.46502 * 119.99809 * 274.99768 * 3 2 1 5 5 C 1.50697 * 109.47089 * 275.00098 * 4 3 2 6 6 H 1.07997 * 120.00178 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99615 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99674 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00369 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47286 * 89.99842 * 9 7 5 11 11 H 1.48497 * 109.47302 * 210.00023 * 9 7 5 12 12 H 1.48500 * 109.46989 * 329.99857 * 9 7 5 13 13 S 1.65596 * 120.00053 * 94.99616 * 3 2 1 14 14 O 1.42101 * 106.40411 * 336.46473 * 13 3 2 15 15 O 1.42095 * 106.40250 * 203.54038 * 13 3 2 16 16 C 1.76197 * 107.21602 * 89.99982 * 13 3 2 17 17 C 1.38203 * 120.37780 * 90.00028 * 16 13 3 18 18 N 1.31884 * 120.90235 * 180.02562 * 17 16 13 19 19 C 1.31910 * 121.76190 * 359.97260 * 18 17 16 20 20 Cl 1.73599 * 119.67522 * 179.97438 * 19 18 17 21 21 C 1.38865 * 120.65692 * 0.02562 * 19 18 17 22 22 O 1.35934 * 120.47962 * 179.97438 * 21 19 18 23 23 C 1.42903 * 117.00080 * 179.97438 * 22 21 19 24 24 C 1.38599 * 120.37799 * 270.28037 * 16 13 3 25 25 H 1.08990 * 109.47166 * 300.00384 * 1 2 3 26 26 H 1.09007 * 109.47034 * 60.00244 * 1 2 3 27 27 H 1.09001 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47151 * 240.00047 * 2 1 3 29 29 H 1.08995 * 109.46692 * 120.00031 * 2 1 3 30 30 H 1.09003 * 109.47151 * 35.00312 * 4 3 2 31 31 H 1.08996 * 109.46746 * 154.99823 * 4 3 2 32 32 H 0.96996 * 119.99740 * 179.97438 * 8 7 5 33 33 H 1.07999 * 119.54486 * 0.02562 * 17 16 13 34 34 H 1.09002 * 109.47382 * 300.00508 * 23 22 21 35 35 H 1.09001 * 109.46938 * 180.02562 * 23 22 21 36 36 H 1.09004 * 109.46926 * 60.00616 * 23 22 21 37 37 H 1.07994 * 120.80385 * 359.97438 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8530 2.3613 -3.0844 8 7 5.0196 2.0825 -3.6238 9 14 2.6819 3.5340 -3.9461 10 1 2.9467 4.9222 -3.4899 11 1 2.8865 3.4480 -5.4144 12 1 1.2814 3.1642 -3.6190 13 16 2.4121 2.1202 1.4287 14 8 1.6869 1.4415 2.4448 15 8 2.3056 3.5186 1.1998 16 6 4.1169 1.7941 1.7320 17 6 5.0883 2.6555 1.2584 18 7 6.3673 2.4212 1.4790 19 6 6.7729 1.3641 2.1558 20 17 8.4704 1.1081 2.4138 21 6 5.8555 0.4533 2.6631 22 8 6.2775 -0.6351 3.3595 23 6 5.2702 -1.5232 3.8482 24 6 4.4993 0.6677 2.4433 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3618 1.8097 -1.9453 31 1 2.0922 3.1802 -1.0756 32 1 5.2714 2.4850 -4.4696 33 1 4.7960 3.5326 0.7001 34 1 4.6059 -0.9833 4.5228 35 1 5.7413 -2.3469 4.3847 36 1 4.6952 -1.9168 3.0099 37 1 3.7615 -0.0245 2.8214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767761332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:32 Heat of formation + Delta-G solvation = -71.468154 kcal Electronic energy + Delta-G solvation = -25411.814769 eV Core-core repulsion = 21536.341687 eV Total energy + Delta-G solvation = -3875.473082 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.059 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.71922 -38.32157 -37.00287 -36.64644 -36.36419 -35.55402 -32.72800 -32.44990 -30.75479 -30.36735 -27.69557 -27.28778 -24.06434 -23.33280 -22.99825 -21.68763 -19.30193 -18.09322 -17.52736 -17.24189 -17.07792 -16.92436 -16.20299 -16.12737 -15.65560 -14.63631 -14.37559 -14.18681 -14.13031 -13.83071 -13.56275 -13.04121 -12.79533 -12.64487 -12.19445 -12.06380 -12.03105 -11.82582 -11.80760 -11.67132 -11.64030 -11.42954 -11.26914 -11.13137 -11.07412 -10.60810 -10.53356 -10.24990 -10.01121 -9.72695 -9.66497 -8.71189 -8.55910 -8.27798 -6.20939 -4.24154 0.38413 0.78087 1.08951 1.75617 2.88253 3.17398 3.23891 3.30070 3.32598 3.51737 4.01948 4.28275 4.29646 4.45228 4.75508 4.80264 4.92391 4.95321 5.06235 5.10932 5.18506 5.27087 5.39143 5.55000 5.60007 5.72627 5.87436 6.10778 6.20757 6.37903 6.47730 6.73863 6.87040 6.96329 7.19629 7.44125 7.61304 8.32259 8.80205 9.37891 10.91036 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.005521 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.380700 B = 5069.894171 C = 6469.759312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.971 5.971 4 C 0.211 3.789 5 C -0.551 4.551 6 H 0.078 0.922 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.868 3.132 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.263 1.263 13 S 2.696 3.304 14 O -0.967 6.967 15 O -0.949 6.949 16 C -0.685 4.685 17 C 0.208 3.792 18 N -0.450 5.450 19 C 0.197 3.803 20 Cl -0.014 7.014 21 C 0.067 3.933 22 O -0.299 6.299 23 C 0.019 3.981 24 C -0.056 4.056 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.267 0.733 33 H 0.188 0.812 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.434 -6.325 12.607 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.811 5.811 4 C 0.088 3.912 5 C -0.590 4.590 6 H 0.096 0.904 7 C -0.125 4.125 8 N -0.524 5.524 9 Si 0.694 3.306 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.187 1.187 13 S 2.782 3.218 14 O -0.957 6.957 15 O -0.940 6.940 16 C -0.770 4.770 17 C 0.050 3.950 18 N -0.161 5.161 19 C 0.031 3.969 20 Cl 0.014 6.986 21 C 0.017 3.983 22 O -0.211 6.211 23 C -0.076 4.076 24 C -0.083 4.083 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.205 0.795 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.843 -5.332 12.722 13.917 hybrid contribution -0.284 -0.441 -0.561 0.768 sum -2.127 -5.773 12.161 13.629 Atomic orbital electron populations 1.22221 0.96376 1.01840 1.02562 1.21115 0.93924 0.82116 1.02849 1.57211 1.77603 1.23513 1.22733 1.19710 0.98578 0.92302 0.80579 1.21384 1.00902 1.29831 1.06843 0.90401 1.24849 0.94918 0.95922 0.96787 1.69897 1.20377 1.43352 1.18789 0.86967 0.82030 0.82305 0.79249 1.19495 1.20997 1.18716 1.02000 0.73085 0.73844 0.72869 1.93530 1.69247 1.75885 1.57077 1.93566 1.85649 1.29510 1.85247 1.32252 1.29312 1.04425 1.11027 1.22436 0.85084 0.96964 0.90475 1.67258 1.19215 1.17366 1.12266 1.21232 0.87481 0.91636 0.96528 1.98405 1.10570 1.95266 1.94313 1.19408 0.92283 0.89738 0.96858 1.86169 1.35228 1.32481 1.67258 1.23233 0.92166 0.92877 0.99337 1.21296 0.94547 0.96465 0.95998 0.92346 0.92013 0.91904 0.89479 0.91582 0.93837 0.93515 0.92336 0.79527 0.92107 0.87485 0.92045 0.82216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.13 1.90 6.06 -4.04 -0.02 1.87 16 3 N -0.97 -17.75 2.77 -115.66 -0.32 -18.07 16 4 C 0.21 4.54 4.50 -5.19 -0.02 4.52 16 5 C -0.55 -13.94 9.94 -34.44 -0.34 -14.28 16 6 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 7 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.89 -25.55 13.96 55.43 0.77 -24.78 16 9 Si 0.87 19.95 27.47 -169.99 -4.67 15.29 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 13 S 2.70 48.13 5.66 -107.50 -0.61 47.53 16 14 O -0.97 -16.82 16.33 -57.17 -0.93 -17.76 16 15 O -0.95 -19.13 15.86 -57.17 -0.91 -20.04 16 16 C -0.68 -11.90 5.99 -39.46 -0.24 -12.14 16 17 C 0.21 3.92 10.68 -17.54 -0.19 3.74 16 18 N -0.45 -8.58 10.34 -10.25 -0.11 -8.69 16 19 C 0.20 3.42 7.29 -17.29 -0.13 3.29 16 20 Cl -0.01 -0.22 28.66 -51.86 -1.49 -1.70 16 21 C 0.07 1.03 6.70 -39.05 -0.26 0.77 16 22 O -0.30 -3.90 9.97 -19.53 -0.19 -4.10 16 23 C 0.02 0.16 9.83 101.05 0.99 1.16 16 24 C -0.06 -0.84 8.61 -39.14 -0.34 -1.18 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 29 H 0.07 0.85 7.61 -51.93 -0.40 0.45 16 30 H 0.04 0.91 7.17 -51.93 -0.37 0.53 16 31 H 0.05 1.03 6.34 -51.93 -0.33 0.70 16 32 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.19 3.46 7.62 -52.49 -0.40 3.06 16 34 H 0.06 0.46 7.71 -51.93 -0.40 0.06 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.49 7.69 -51.93 -0.40 0.09 16 37 H 0.16 1.93 6.10 -52.49 -0.32 1.61 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -31.33 344.34 -7.84 -39.17 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.32 Total: 0.06 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -0.26 Total: -12.08 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.35 Total: -51.54 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -2.04 Total: -41.90 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.67 Total: 15.29 kcal Atomic # 16 Polarization: 48.13 SS G_CDS: -0.61 Total: 47.53 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.49 Total: -1.70 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.33 -7.84 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767761332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.300 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds