Wall clock time and date at job start Tue Mar 31 2020 17:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.47080 * 2 1 4 4 C 1.46502 * 119.99809 * 274.99768 * 3 2 1 5 5 C 1.50697 * 109.47089 * 275.00098 * 4 3 2 6 6 H 1.07997 * 120.00178 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99615 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99674 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00369 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47286 * 89.99842 * 9 7 5 11 11 H 1.48497 * 109.47302 * 210.00023 * 9 7 5 12 12 H 1.48500 * 109.46989 * 329.99857 * 9 7 5 13 13 S 1.65596 * 120.00053 * 94.99616 * 3 2 1 14 14 O 1.42101 * 106.40411 * 336.46473 * 13 3 2 15 15 O 1.42095 * 106.40250 * 203.54038 * 13 3 2 16 16 C 1.76197 * 107.21602 * 89.99982 * 13 3 2 17 17 C 1.38203 * 120.37780 * 90.00028 * 16 13 3 18 18 N 1.31884 * 120.90235 * 180.02562 * 17 16 13 19 19 C 1.31910 * 121.76190 * 359.97260 * 18 17 16 20 20 Cl 1.73599 * 119.67522 * 179.97438 * 19 18 17 21 21 C 1.38865 * 120.65692 * 0.02562 * 19 18 17 22 22 O 1.35934 * 120.47962 * 179.97438 * 21 19 18 23 23 C 1.42903 * 117.00080 * 179.97438 * 22 21 19 24 24 C 1.38599 * 120.37799 * 270.28037 * 16 13 3 25 25 H 1.08990 * 109.47166 * 300.00384 * 1 2 3 26 26 H 1.09007 * 109.47034 * 60.00244 * 1 2 3 27 27 H 1.09001 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47151 * 240.00047 * 2 1 3 29 29 H 1.08995 * 109.46692 * 120.00031 * 2 1 3 30 30 H 1.09003 * 109.47151 * 35.00312 * 4 3 2 31 31 H 1.08996 * 109.46746 * 154.99823 * 4 3 2 32 32 H 0.96996 * 119.99740 * 179.97438 * 8 7 5 33 33 H 1.07999 * 119.54486 * 0.02562 * 17 16 13 34 34 H 1.09002 * 109.47382 * 300.00508 * 23 22 21 35 35 H 1.09001 * 109.46938 * 180.02562 * 23 22 21 36 36 H 1.09004 * 109.46926 * 60.00616 * 23 22 21 37 37 H 1.07994 * 120.80385 * 359.97438 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8530 2.3613 -3.0844 8 7 5.0196 2.0825 -3.6238 9 14 2.6819 3.5340 -3.9461 10 1 2.9467 4.9222 -3.4899 11 1 2.8865 3.4480 -5.4144 12 1 1.2814 3.1642 -3.6190 13 16 2.4121 2.1202 1.4287 14 8 1.6869 1.4415 2.4448 15 8 2.3056 3.5186 1.1998 16 6 4.1169 1.7941 1.7320 17 6 5.0883 2.6555 1.2584 18 7 6.3673 2.4212 1.4790 19 6 6.7729 1.3641 2.1558 20 17 8.4704 1.1081 2.4138 21 6 5.8555 0.4533 2.6631 22 8 6.2775 -0.6351 3.3595 23 6 5.2702 -1.5232 3.8482 24 6 4.4993 0.6677 2.4433 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3618 1.8097 -1.9453 31 1 2.0922 3.1802 -1.0756 32 1 5.2714 2.4850 -4.4696 33 1 4.7960 3.5326 0.7001 34 1 4.6059 -0.9833 4.5228 35 1 5.7413 -2.3469 4.3847 36 1 4.6952 -1.9168 3.0099 37 1 3.7615 -0.0245 2.8214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767761332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:31 Heat of formation + Delta-G solvation = -94.294213 kcal Electronic energy + Delta-G solvation = -25412.804581 eV Core-core repulsion = 21536.341687 eV Total energy + Delta-G solvation = -3876.462895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.059 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94426 -39.44494 -38.44868 -37.89931 -37.81119 -37.01985 -34.65229 -33.75957 -31.98077 -31.77968 -28.95840 -28.55597 -25.37436 -24.66134 -24.41286 -23.17714 -20.56760 -19.45146 -18.99442 -18.78215 -18.61702 -18.25964 -17.53905 -17.14745 -17.12294 -16.19367 -15.76385 -15.56993 -15.35241 -14.91605 -14.77156 -14.57503 -14.32789 -14.10109 -13.73480 -13.51810 -13.28341 -13.13989 -13.11521 -13.04057 -12.76964 -12.57584 -12.56177 -12.54545 -12.39055 -12.18421 -12.07302 -11.69448 -11.60238 -11.32230 -11.06604 -10.74347 -9.86164 -9.71640 -8.25733 -6.31542 -0.95556 -0.61677 -0.18941 0.48329 1.41081 1.44693 1.51037 1.80465 1.86980 2.14970 2.37773 2.61483 2.98711 3.10333 3.17460 3.52439 3.64878 3.67279 3.91104 4.00001 4.34336 4.35917 4.40605 4.47237 4.49440 4.71531 4.73832 4.88065 4.96579 5.03553 5.07075 5.43239 5.45707 5.49221 5.75548 5.83710 6.28517 6.30125 6.74298 7.33630 8.89418 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.005521 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.380700 B = 5069.894171 C = 6469.759312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.975 5.975 4 C 0.217 3.783 5 C -0.537 4.537 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.939 5.939 9 Si 0.923 3.077 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.234 1.234 13 S 2.710 3.290 14 O -0.958 6.958 15 O -0.976 6.976 16 C -0.689 4.689 17 C 0.183 3.817 18 N -0.475 5.475 19 C 0.174 3.826 20 Cl -0.003 7.003 21 C 0.080 3.920 22 O -0.303 6.303 23 C 0.002 3.998 24 C -0.052 4.052 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.176 0.824 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.072 0.928 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 -7.844 13.912 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 N -0.814 5.814 4 C 0.092 3.908 5 C -0.577 4.577 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.579 5.579 9 Si 0.747 3.253 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.157 1.157 13 S 2.796 3.204 14 O -0.948 6.948 15 O -0.966 6.966 16 C -0.775 4.775 17 C 0.024 3.976 18 N -0.186 5.186 19 C 0.008 3.992 20 Cl 0.026 6.974 21 C 0.029 3.971 22 O -0.216 6.216 23 C -0.092 4.092 24 C -0.079 4.079 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.193 0.807 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.090 0.910 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.857 -6.882 14.061 16.122 hybrid contribution 0.413 -0.144 -0.808 0.919 sum -3.444 -7.026 13.252 15.390 Atomic orbital electron populations 1.22214 0.94618 1.03694 1.02199 1.21456 0.95456 0.80439 1.03849 1.57194 1.77872 1.24813 1.21510 1.19477 0.96628 0.92615 0.82043 1.21594 1.01897 1.27984 1.06182 0.93608 1.25668 0.96349 0.97815 0.97900 1.70045 1.22722 1.45538 1.19549 0.86071 0.81453 0.79957 0.77853 1.19553 1.21140 1.15707 1.01544 0.72939 0.73172 0.72712 1.93530 1.69165 1.75564 1.56573 1.93529 1.86132 1.31349 1.85606 1.32173 1.28541 1.05143 1.11608 1.22354 0.85692 0.97645 0.91878 1.67163 1.19483 1.18730 1.13267 1.21527 0.88538 0.92029 0.97130 1.98396 1.09639 1.95145 1.94213 1.19391 0.91915 0.89895 0.95894 1.86192 1.37066 1.31869 1.66435 1.23711 0.92242 0.92979 1.00242 1.21689 0.95246 0.96033 0.94975 0.92544 0.92537 0.88981 0.90102 0.89089 0.92364 0.93738 0.92554 0.80672 0.90596 0.84539 0.90956 0.78782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.11 3.12 6.06 86.38 0.52 3.64 16 3 N -0.98 -34.24 2.77 -519.84 -1.44 -35.67 16 4 C 0.22 9.10 4.50 85.63 0.39 9.48 16 5 C -0.54 -27.50 9.94 25.60 0.25 -27.24 16 6 H 0.05 2.59 8.06 -2.91 -0.02 2.57 16 7 C 0.02 1.19 5.47 84.65 0.46 1.65 16 8 N -0.94 -55.74 13.96 21.45 0.30 -55.45 16 9 Si 0.92 40.82 27.47 68.60 1.88 42.71 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.23 -9.19 6.54 99.48 0.65 -8.54 16 13 S 2.71 93.56 5.66 -56.49 -0.32 93.24 16 14 O -0.96 -30.81 16.33 -128.00 -2.09 -32.90 16 15 O -0.98 -39.13 15.86 -128.00 -2.03 -41.16 16 16 C -0.69 -23.66 5.99 22.35 0.13 -23.53 16 17 C 0.18 7.12 10.68 84.68 0.90 8.02 16 18 N -0.47 -18.72 10.34 -186.33 -1.93 -20.64 16 19 C 0.17 6.03 7.29 84.83 0.62 6.65 16 20 Cl 0.00 -0.08 28.66 -2.72 -0.08 -0.16 16 21 C 0.08 2.36 6.70 22.62 0.15 2.51 16 22 O -0.30 -7.20 9.97 -92.80 -0.92 -8.12 16 23 C 0.00 0.03 9.83 113.37 1.11 1.14 16 24 C -0.05 -1.49 8.61 22.55 0.19 -1.29 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 2.34 8.11 -2.39 -0.02 2.32 16 29 H 0.09 2.03 7.61 -2.39 -0.02 2.02 16 30 H 0.06 2.29 7.17 -2.39 -0.02 2.28 16 31 H 0.04 1.92 6.34 -2.39 -0.02 1.90 16 32 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.18 6.96 7.62 -2.91 -0.02 6.94 16 34 H 0.08 0.84 7.71 -2.39 -0.02 0.82 16 35 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 0.86 7.69 -2.38 -0.02 0.84 16 37 H 0.20 3.98 6.10 -2.91 -0.02 3.96 16 Total: -1.00 -68.76 344.34 -0.10 -68.86 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.05 Total: 11.43 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 5.48 Total: -22.13 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -3.06 Total: -111.76 kcal Atomic # 8 Polarization: -77.14 SS G_CDS: -5.05 Total: -82.18 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.88 Total: 42.71 kcal Atomic # 16 Polarization: 93.56 SS G_CDS: -0.32 Total: 93.24 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.08 Total: -0.16 kcal Total: -68.76 -0.10 -68.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767761332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.439 kcal (2) G-P(sol) polarization free energy of solvation -68.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds