Wall clock time and date at job start Tue Mar 31 2020 17:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46982 * 2 1 4 4 H 1.09000 * 109.46946 * 305.56782 * 3 2 1 5 5 C 1.50702 * 109.47068 * 185.56826 * 3 2 1 6 6 H 1.08001 * 120.00170 * 244.98875 * 5 3 2 7 7 C 1.37875 * 120.00186 * 64.98874 * 5 3 2 8 8 N 1.31520 * 119.99717 * 9.04628 * 7 5 3 9 9 Si 1.86796 * 120.00428 * 189.04876 * 7 5 3 10 10 H 1.48499 * 109.47262 * 270.00065 * 9 7 5 11 11 H 1.48501 * 109.46989 * 29.99970 * 9 7 5 12 12 H 1.48498 * 109.47632 * 149.99942 * 9 7 5 13 13 N 1.46493 * 109.47292 * 65.56705 * 3 2 1 14 14 S 1.65604 * 119.99971 * 215.09854 * 13 3 2 15 15 O 1.42102 * 106.40217 * 179.35960 * 14 13 3 16 16 O 1.42092 * 106.40287 * 312.27869 * 14 13 3 17 17 C 1.76196 * 107.21664 * 65.82106 * 14 13 3 18 18 C 1.38202 * 120.37657 * 93.72127 * 17 14 13 19 19 N 1.31884 * 120.90120 * 179.97438 * 18 17 14 20 20 C 1.31918 * 121.75841 * 0.02866 * 19 18 17 21 21 Cl 1.73598 * 119.67200 * 179.97438 * 20 19 18 22 22 C 1.38861 * 120.65813 * 359.97438 * 20 19 18 23 23 O 1.35938 * 120.47843 * 180.02562 * 22 20 19 24 24 C 1.42899 * 116.99924 * 180.02562 * 23 22 20 25 25 C 1.38591 * 120.37514 * 273.43830 * 17 14 13 26 26 H 1.08999 * 109.47235 * 64.56281 * 1 2 3 27 27 H 1.08994 * 109.47252 * 184.56797 * 1 2 3 28 28 H 1.09001 * 109.47462 * 304.56627 * 1 2 3 29 29 H 1.09000 * 109.47170 * 240.00043 * 2 1 3 30 30 H 1.08996 * 109.47181 * 119.99776 * 2 1 3 31 31 H 0.96989 * 120.00446 * 356.97155 * 8 7 5 32 32 H 0.97001 * 119.99927 * 35.10145 * 13 3 2 33 33 H 1.08005 * 119.54998 * 359.97438 * 18 17 14 34 34 H 1.08999 * 109.46869 * 179.97438 * 24 23 22 35 35 H 1.09004 * 109.46849 * 299.99622 * 24 23 22 36 36 H 1.08994 * 109.47422 * 59.99344 * 24 23 22 37 37 H 1.08001 * 120.80908 * 0.03165 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5974 1.9843 -0.8359 5 6 3.5406 1.4448 -0.1379 6 1 4.1565 1.8134 0.6691 7 6 4.1274 0.9763 -1.2942 8 7 3.3836 0.6948 -2.3417 9 14 5.9788 0.7411 -1.3732 10 1 6.6169 1.9936 -1.8520 11 1 6.4938 0.4091 -0.0205 12 1 6.2978 -0.3662 -2.3098 13 7 1.6641 2.0934 1.2574 14 16 1.2651 3.7006 1.2710 15 8 0.9396 4.0219 2.6164 16 8 2.2784 4.3718 0.5350 17 6 -0.2227 3.8764 0.3436 18 6 -1.4494 3.8558 0.9798 19 7 -2.5694 3.9870 0.2959 20 6 -2.5689 4.1417 -1.0141 21 17 -4.0755 4.3088 -1.8603 22 6 -1.3753 4.1723 -1.7231 23 8 -1.3790 4.3325 -3.0730 24 6 -0.1089 4.3526 -3.7274 25 6 -0.1758 4.0427 -1.0315 26 1 -0.3633 0.4414 -0.9280 27 1 -0.3633 -1.0243 0.0818 28 1 -0.3634 0.5830 0.8462 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4185 0.7748 -2.2868 32 1 1.6490 1.5829 2.0821 33 1 -1.4914 3.7306 2.0518 34 1 -0.2546 4.4858 -4.7994 35 1 0.4883 5.1765 -3.3364 36 1 0.4085 3.4107 -3.5456 37 1 0.7691 4.0666 -1.5539 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767856511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:48 Heat of formation + Delta-G solvation = -86.370177 kcal Electronic energy + Delta-G solvation = -25584.404748 eV Core-core repulsion = 21708.285466 eV Total energy + Delta-G solvation = -3876.119283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.059 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88521 -38.42519 -36.97108 -36.84673 -36.38688 -35.48162 -32.63500 -32.38228 -30.98400 -30.92014 -27.67575 -26.33528 -24.23391 -23.45339 -23.25122 -20.61267 -19.62546 -18.52476 -17.70246 -17.42206 -17.28729 -17.00366 -16.21882 -16.14437 -15.45119 -14.67152 -14.35634 -14.28298 -13.87554 -13.85112 -13.44907 -13.34227 -13.05639 -12.49301 -12.06509 -12.02136 -11.78962 -11.71731 -11.67591 -11.64847 -11.58453 -11.48588 -11.24007 -10.86586 -10.73352 -10.37326 -10.27535 -10.20657 -10.12257 -9.96971 -9.70840 -8.71359 -8.54017 -8.19675 -6.52278 -4.25677 0.19705 0.74464 0.87860 1.55757 2.83541 3.09176 3.38792 3.40369 3.51996 3.56719 4.02399 4.12867 4.36469 4.42484 4.60027 4.72757 4.85249 5.11174 5.14530 5.16984 5.31398 5.48495 5.58953 5.75805 5.77185 5.92045 5.93333 6.12047 6.40051 6.50510 6.65062 6.79449 7.05829 7.15902 7.31501 7.66743 7.86530 8.34014 8.65591 9.41899 10.83027 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.004797 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.857086 B = 5835.834211 C = 6566.237617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.028 0.972 5 C -0.602 4.602 6 H 0.061 0.939 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 1.069 2.931 10 H -0.286 1.286 11 H -0.287 1.287 12 H -0.284 1.284 13 N -1.091 6.091 14 S 2.694 3.306 15 O -0.972 6.972 16 O -0.935 6.935 17 C -0.687 4.687 18 C 0.175 3.825 19 N -0.455 5.455 20 C 0.187 3.813 21 Cl -0.012 7.012 22 C 0.079 3.921 23 O -0.298 6.298 24 C 0.015 3.985 25 C -0.046 4.046 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.268 0.732 32 H 0.410 0.590 33 H 0.184 0.816 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 4.345 0.672 10.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.165 3.835 4 H 0.046 0.954 5 C -0.641 4.641 6 H 0.079 0.921 7 C -0.178 4.178 8 N -0.544 5.544 9 Si 0.897 3.103 10 H -0.213 1.213 11 H -0.213 1.213 12 H -0.210 1.210 13 N -0.853 5.853 14 S 2.778 3.222 15 O -0.962 6.962 16 O -0.925 6.925 17 C -0.771 4.771 18 C 0.016 3.984 19 N -0.166 5.166 20 C 0.022 3.978 21 Cl 0.017 6.983 22 C 0.029 3.971 23 O -0.209 6.209 24 C -0.080 4.080 25 C -0.073 4.073 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.244 0.756 33 H 0.201 0.799 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.107 4.713 0.051 10.254 hybrid contribution -1.059 -0.030 0.386 1.128 sum -10.166 4.682 0.438 11.201 Atomic orbital electron populations 1.21858 0.98264 1.00309 1.00518 1.21958 0.92702 0.99503 1.02754 1.18659 0.96022 0.89627 0.79183 0.95397 1.22274 0.90584 1.46076 1.05213 0.92072 1.25764 1.07062 0.93363 0.91602 1.70846 1.07207 1.46664 1.29673 0.83539 0.74109 0.77004 0.75678 1.21286 1.21289 1.20983 1.55383 1.82664 1.29358 1.17862 1.02127 0.73330 0.73737 0.73038 1.93547 1.85154 1.83514 1.34011 1.93631 1.52839 1.72663 1.73325 1.32429 1.22771 1.14445 1.07434 1.22354 0.84755 0.91041 1.00263 1.67202 1.31455 1.12701 1.05286 1.21186 0.86536 1.00452 0.89618 1.98412 1.30221 1.95230 1.74439 1.19511 0.93025 0.99497 0.85095 1.86158 1.32973 1.86952 1.14854 1.23354 0.83397 1.02963 0.98264 1.21577 0.98573 0.94112 0.93087 0.93938 0.93766 0.93663 0.90219 0.92531 0.92108 0.75569 0.79885 0.87139 0.91820 0.91155 0.81355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.86 37.16 0.37 -2.13 16 2 C -0.13 -2.52 5.22 -26.73 -0.14 -2.66 16 3 C 0.27 5.71 1.77 -69.08 -0.12 5.58 16 4 H 0.03 0.62 6.43 -51.93 -0.33 0.28 16 5 C -0.60 -15.09 8.77 -34.44 -0.30 -15.39 16 6 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 7 C 0.03 0.69 5.16 -17.82 -0.09 0.60 16 8 N -0.91 -24.13 13.02 55.43 0.72 -23.41 16 9 Si 1.07 23.55 29.91 -169.99 -5.08 18.46 16 10 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -1.09 -19.57 4.86 -5.88 -0.03 -19.60 16 14 S 2.69 47.51 5.66 -107.50 -0.61 46.91 16 15 O -0.97 -17.47 17.22 -57.17 -0.98 -18.46 16 16 O -0.94 -19.79 17.19 -57.17 -0.98 -20.77 16 17 C -0.69 -10.86 5.89 -39.46 -0.23 -11.09 16 18 C 0.17 2.55 10.68 -17.54 -0.19 2.37 16 19 N -0.45 -6.92 10.34 -10.24 -0.11 -7.02 16 20 C 0.19 2.82 7.29 -17.28 -0.13 2.69 16 21 Cl -0.01 -0.15 28.66 -51.86 -1.49 -1.64 16 22 C 0.08 1.18 6.70 -39.05 -0.26 0.92 16 23 O -0.30 -4.06 9.97 -19.54 -0.19 -4.25 16 24 C 0.01 0.17 9.83 101.05 0.99 1.16 16 25 C -0.05 -0.73 7.87 -39.15 -0.31 -1.04 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 29 H 0.08 1.74 6.31 -51.93 -0.33 1.42 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.27 6.89 6.04 -40.82 -0.25 6.65 16 32 H 0.41 6.36 8.84 -34.48 -0.30 6.06 16 33 H 0.18 2.24 7.54 -52.48 -0.40 1.84 16 34 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 36 H 0.07 0.86 7.71 -51.93 -0.40 0.46 16 37 H 0.17 2.64 6.07 -52.49 -0.32 2.32 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -30.48 341.84 -8.04 -38.51 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.02 Total: 5.10 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.41 Total: -18.97 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.59 Total: -50.03 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -2.16 Total: -43.48 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.08 Total: 18.46 kcal Atomic # 16 Polarization: 47.51 SS G_CDS: -0.61 Total: 46.91 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.49 Total: -1.64 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.48 -8.04 -38.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767856511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.858 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds