Wall clock time and date at job start Tue Mar 31 2020 17:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46982 * 2 1 4 4 H 1.09000 * 109.46946 * 305.56782 * 3 2 1 5 5 C 1.50702 * 109.47068 * 185.56826 * 3 2 1 6 6 H 1.08001 * 120.00170 * 244.98875 * 5 3 2 7 7 C 1.37875 * 120.00186 * 64.98874 * 5 3 2 8 8 N 1.31520 * 119.99717 * 9.04628 * 7 5 3 9 9 Si 1.86796 * 120.00428 * 189.04876 * 7 5 3 10 10 H 1.48499 * 109.47262 * 270.00065 * 9 7 5 11 11 H 1.48501 * 109.46989 * 29.99970 * 9 7 5 12 12 H 1.48498 * 109.47632 * 149.99942 * 9 7 5 13 13 N 1.46493 * 109.47292 * 65.56705 * 3 2 1 14 14 S 1.65604 * 119.99971 * 215.09854 * 13 3 2 15 15 O 1.42102 * 106.40217 * 179.35960 * 14 13 3 16 16 O 1.42092 * 106.40287 * 312.27869 * 14 13 3 17 17 C 1.76196 * 107.21664 * 65.82106 * 14 13 3 18 18 C 1.38202 * 120.37657 * 93.72127 * 17 14 13 19 19 N 1.31884 * 120.90120 * 179.97438 * 18 17 14 20 20 C 1.31918 * 121.75841 * 0.02866 * 19 18 17 21 21 Cl 1.73598 * 119.67200 * 179.97438 * 20 19 18 22 22 C 1.38861 * 120.65813 * 359.97438 * 20 19 18 23 23 O 1.35938 * 120.47843 * 180.02562 * 22 20 19 24 24 C 1.42899 * 116.99924 * 180.02562 * 23 22 20 25 25 C 1.38591 * 120.37514 * 273.43830 * 17 14 13 26 26 H 1.08999 * 109.47235 * 64.56281 * 1 2 3 27 27 H 1.08994 * 109.47252 * 184.56797 * 1 2 3 28 28 H 1.09001 * 109.47462 * 304.56627 * 1 2 3 29 29 H 1.09000 * 109.47170 * 240.00043 * 2 1 3 30 30 H 1.08996 * 109.47181 * 119.99776 * 2 1 3 31 31 H 0.96989 * 120.00446 * 356.97155 * 8 7 5 32 32 H 0.97001 * 119.99927 * 35.10145 * 13 3 2 33 33 H 1.08005 * 119.54998 * 359.97438 * 18 17 14 34 34 H 1.08999 * 109.46869 * 179.97438 * 24 23 22 35 35 H 1.09004 * 109.46849 * 299.99622 * 24 23 22 36 36 H 1.08994 * 109.47422 * 59.99344 * 24 23 22 37 37 H 1.08001 * 120.80908 * 0.03165 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5974 1.9843 -0.8359 5 6 3.5406 1.4448 -0.1379 6 1 4.1565 1.8134 0.6691 7 6 4.1274 0.9763 -1.2942 8 7 3.3836 0.6948 -2.3417 9 14 5.9788 0.7411 -1.3732 10 1 6.6169 1.9936 -1.8520 11 1 6.4938 0.4091 -0.0205 12 1 6.2978 -0.3662 -2.3098 13 7 1.6641 2.0934 1.2574 14 16 1.2651 3.7006 1.2710 15 8 0.9396 4.0219 2.6164 16 8 2.2784 4.3718 0.5350 17 6 -0.2227 3.8764 0.3436 18 6 -1.4494 3.8558 0.9798 19 7 -2.5694 3.9870 0.2959 20 6 -2.5689 4.1417 -1.0141 21 17 -4.0755 4.3088 -1.8603 22 6 -1.3753 4.1723 -1.7231 23 8 -1.3790 4.3325 -3.0730 24 6 -0.1089 4.3526 -3.7274 25 6 -0.1758 4.0427 -1.0315 26 1 -0.3633 0.4414 -0.9280 27 1 -0.3633 -1.0243 0.0818 28 1 -0.3634 0.5830 0.8462 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4185 0.7748 -2.2868 32 1 1.6490 1.5829 2.0821 33 1 -1.4914 3.7306 2.0518 34 1 -0.2546 4.4858 -4.7994 35 1 0.4883 5.1765 -3.3364 36 1 0.4085 3.4107 -3.5456 37 1 0.7691 4.0666 -1.5539 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767856511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:48 Heat of formation + Delta-G solvation = -108.492534 kcal Electronic energy + Delta-G solvation = -25585.364046 eV Core-core repulsion = 21708.285466 eV Total energy + Delta-G solvation = -3877.078580 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.059 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.03874 -39.52201 -38.50185 -38.01684 -37.93122 -37.00724 -34.23602 -33.82551 -32.45709 -32.07108 -28.68276 -28.08464 -25.44960 -25.02016 -24.56091 -22.19799 -20.96450 -19.87800 -19.18633 -18.83019 -18.67074 -18.29044 -17.54030 -17.25075 -16.97491 -15.90199 -15.72635 -15.65150 -15.43826 -15.02421 -14.98186 -14.89295 -14.26623 -14.06398 -13.38728 -13.32450 -13.24056 -13.15946 -13.09685 -13.04453 -12.67648 -12.65499 -12.62025 -12.45278 -12.38944 -11.91539 -11.88579 -11.74357 -11.52468 -11.35431 -11.11336 -10.43246 -9.96381 -9.82987 -8.51884 -6.25526 -1.04484 -0.66567 -0.29727 0.42069 1.59600 1.64650 1.77707 1.82157 1.84423 2.14782 2.58852 2.64929 2.93301 3.12181 3.21942 3.47388 3.54601 3.63052 3.98580 4.20375 4.24566 4.27049 4.32449 4.38993 4.45632 4.62297 4.63547 4.79949 4.90048 5.11933 5.15530 5.48975 5.53816 5.70868 6.02714 6.14311 6.20316 6.40142 6.68180 7.46700 8.84381 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.004797 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.857086 B = 5835.834211 C = 6566.237617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.272 3.728 4 H 0.020 0.980 5 C -0.614 4.614 6 H 0.047 0.953 7 C -0.015 4.015 8 N -0.928 5.928 9 Si 1.102 2.898 10 H -0.283 1.283 11 H -0.274 1.274 12 H -0.282 1.282 13 N -1.089 6.089 14 S 2.713 3.287 15 O -0.974 6.974 16 O -0.975 6.975 17 C -0.689 4.689 18 C 0.179 3.821 19 N -0.458 5.458 20 C 0.182 3.818 21 Cl 0.006 6.994 22 C 0.078 3.922 23 O -0.299 6.299 24 C 0.009 3.991 25 C -0.055 4.055 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.264 0.736 32 H 0.422 0.578 33 H 0.209 0.791 34 H 0.141 0.859 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 4.288 1.092 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C 0.167 3.833 4 H 0.038 0.962 5 C -0.654 4.654 6 H 0.065 0.935 7 C -0.215 4.215 8 N -0.565 5.565 9 Si 0.926 3.074 10 H -0.210 1.210 11 H -0.200 1.200 12 H -0.208 1.208 13 N -0.851 5.851 14 S 2.799 3.201 15 O -0.964 6.964 16 O -0.965 6.965 17 C -0.776 4.776 18 C 0.020 3.980 19 N -0.170 5.170 20 C 0.017 3.983 21 Cl 0.035 6.965 22 C 0.027 3.973 23 O -0.211 6.211 24 C -0.085 4.085 25 C -0.083 4.083 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.258 0.742 33 H 0.225 0.775 34 H 0.159 0.841 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.240 4.649 0.507 11.257 hybrid contribution -0.789 0.045 0.230 0.823 sum -11.028 4.694 0.737 12.008 Atomic orbital electron populations 1.21780 0.95650 1.01837 1.00939 1.21790 0.94986 0.97746 1.01707 1.18444 0.93955 0.90828 0.80105 0.96201 1.22593 0.92823 1.45390 1.04576 0.93489 1.26749 1.09851 0.93258 0.91664 1.70909 1.07213 1.48181 1.30244 0.83105 0.70999 0.77027 0.76297 1.20954 1.19952 1.20789 1.55157 1.83055 1.29390 1.17479 1.01283 0.73179 0.73015 0.72593 1.93537 1.85281 1.83400 1.34171 1.93584 1.55225 1.73542 1.74160 1.32044 1.22106 1.16126 1.07299 1.22753 0.84030 0.89887 1.01301 1.67304 1.31423 1.12938 1.05361 1.21436 0.87286 0.99780 0.89819 1.98417 1.29000 1.95022 1.74083 1.19531 0.92717 0.99305 0.85724 1.86163 1.34106 1.86655 1.14131 1.23575 0.82658 1.02428 0.99831 1.21590 0.98846 0.94579 0.93262 0.94546 0.91887 0.91993 0.92903 0.91913 0.92533 0.74213 0.77457 0.84108 0.91317 0.92550 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.86 71.98 0.71 -3.78 16 2 C -0.12 -4.69 5.22 30.59 0.16 -4.53 16 3 C 0.27 11.52 1.77 44.25 0.08 11.60 16 4 H 0.02 0.90 6.43 -2.39 -0.02 0.88 16 5 C -0.61 -31.06 8.77 25.60 0.22 -30.84 16 6 H 0.05 2.45 7.83 -2.91 -0.02 2.43 16 7 C -0.01 -0.76 5.16 84.65 0.44 -0.33 16 8 N -0.93 -49.98 13.02 21.45 0.28 -49.70 16 9 Si 1.10 47.50 29.91 68.60 2.05 49.55 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 13 N -1.09 -38.28 4.86 -172.53 -0.84 -39.11 16 14 S 2.71 94.08 5.66 -56.49 -0.32 93.76 16 15 O -0.97 -33.61 17.22 -128.00 -2.20 -35.81 16 16 O -0.98 -41.74 17.19 -128.00 -2.20 -43.94 16 17 C -0.69 -21.07 5.89 22.35 0.13 -20.94 16 18 C 0.18 4.87 10.68 84.68 0.90 5.78 16 19 N -0.46 -13.00 10.34 -186.33 -1.93 -14.93 16 20 C 0.18 5.18 7.29 84.83 0.62 5.80 16 21 Cl 0.01 0.15 28.66 -2.72 -0.08 0.07 16 22 C 0.08 2.25 6.70 22.62 0.15 2.40 16 23 O -0.30 -7.81 9.97 -92.85 -0.93 -8.74 16 24 C 0.01 0.20 9.83 113.37 1.11 1.31 16 25 C -0.06 -1.72 7.87 22.55 0.18 -1.54 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.70 7.65 -2.39 -0.02 1.68 16 29 H 0.05 2.32 6.31 -2.39 -0.02 2.31 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.26 13.89 6.04 -92.72 -0.56 13.33 16 32 H 0.42 12.54 8.84 -96.74 -0.85 11.69 16 33 H 0.21 4.49 7.54 -2.91 -0.02 4.47 16 34 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 1.43 7.68 -2.38 -0.02 1.41 16 36 H 0.06 1.40 7.71 -2.39 -0.02 1.38 16 37 H 0.16 5.19 6.07 -2.91 -0.02 5.17 16 Total: -1.00 -63.96 341.84 -0.97 -64.93 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.48 Total: 18.99 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 4.71 Total: -35.08 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -2.48 Total: -103.74 kcal Atomic # 8 Polarization: -83.16 SS G_CDS: -5.33 Total: -88.49 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.05 Total: 49.55 kcal Atomic # 16 Polarization: 94.08 SS G_CDS: -0.32 Total: 93.76 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.08 Total: 0.07 kcal Total: -63.96 -0.97 -64.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767856511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.559 kcal (2) G-P(sol) polarization free energy of solvation -63.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds