Wall clock time and date at job start Tue Mar 31 2020 18:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35105 * 126.41099 * 2 1 4 4 Cl 1.73602 * 125.66039 * 0.02562 * 3 2 1 5 5 N 1.30620 * 108.67485 * 180.02562 * 3 2 1 6 6 C 1.34198 * 109.25523 * 359.97438 * 5 3 2 7 7 C 1.34608 * 108.05294 * 359.73395 * 6 5 3 8 8 S 1.76192 * 126.58585 * 180.28565 * 7 6 5 9 9 O 1.42098 * 106.40704 * 83.70387 * 8 7 6 10 10 O 1.42105 * 106.40317 * 216.62398 * 8 7 6 11 11 N 1.65601 * 107.21736 * 330.16059 * 8 7 6 12 12 C 1.46968 * 120.59849 * 269.72141 * 11 8 7 13 13 C 1.53808 * 108.39568 * 124.75584 * 12 11 8 14 14 N 1.46968 * 108.58147 * 49.64118 * 13 12 11 15 15 C 1.36939 * 120.59141 * 124.61752 * 14 13 12 16 16 H 1.08000 * 119.99912 * 208.18095 * 15 14 13 17 17 C 1.38805 * 120.00026 * 28.19201 * 15 14 13 18 18 N 1.31617 * 120.00406 * 17.55081 * 17 15 14 19 19 Si 1.86802 * 119.99838 * 197.55623 * 17 15 14 20 20 H 1.48496 * 109.47520 * 89.99317 * 19 17 15 21 21 H 1.48497 * 109.47157 * 209.99541 * 19 17 15 22 22 H 1.48502 * 109.47187 * 329.99716 * 19 17 15 23 23 C 1.46959 * 118.81016 * 304.64526 * 14 13 12 24 24 C 1.46964 * 120.59034 * 90.00370 * 11 8 7 25 25 H 1.08993 * 109.47594 * 90.02095 * 1 2 3 26 26 H 1.09004 * 109.47207 * 330.02024 * 1 2 3 27 27 H 1.09000 * 109.47136 * 210.02900 * 1 2 3 28 28 H 1.08004 * 125.97284 * 180.02562 * 6 5 3 29 29 H 1.08996 * 109.61103 * 244.54295 * 12 11 8 30 30 H 1.08998 * 109.60779 * 5.05513 * 12 11 8 31 31 H 1.08995 * 109.74458 * 289.85150 * 13 12 11 32 32 H 1.09006 * 109.53106 * 169.30699 * 13 12 11 33 33 H 0.97000 * 120.00201 * 180.02562 * 18 17 15 34 34 H 1.08995 * 109.61297 * 295.47616 * 23 14 13 35 35 H 1.09001 * 109.75073 * 175.05180 * 23 14 13 36 36 H 1.08999 * 109.61766 * 354.94704 * 24 11 8 37 37 H 1.09000 * 109.61260 * 115.28940 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2669 1.0873 0.0000 4 17 1.7325 2.7390 0.0006 5 7 3.5110 0.6894 -0.0006 6 6 3.5466 -0.6521 -0.0004 7 6 2.2783 -1.1031 0.0063 8 16 1.7628 -2.7878 0.0165 9 8 1.7930 -3.2086 1.3734 10 8 0.5964 -2.8555 -0.7924 11 7 2.9287 -3.6619 -0.7703 12 6 2.8465 -3.8833 -2.2209 13 6 4.1535 -3.3874 -2.8624 14 7 5.2858 -3.9609 -2.1215 15 6 6.2494 -4.6846 -2.7720 16 1 6.7925 -5.4559 -2.2462 17 6 6.5282 -4.4266 -4.1070 18 7 6.1403 -3.2938 -4.6535 19 14 7.4541 -5.6873 -5.1283 20 1 6.4859 -6.6145 -5.7670 21 1 8.2405 -4.9922 -6.1788 22 1 8.3719 -6.4574 -4.2510 23 6 5.3650 -3.7444 -0.6701 24 6 4.0609 -4.2355 -0.0294 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 0.8902 0.5135 27 1 -0.3633 -0.8897 0.5143 28 1 4.4372 -1.2632 -0.0003 29 1 2.7175 -4.9467 -2.4220 30 1 2.0028 -3.3264 -2.6286 31 1 4.1979 -2.2995 -2.8137 32 1 4.1949 -3.7115 -3.9023 33 1 6.3348 -3.1137 -5.5865 34 1 5.4958 -2.6819 -0.4653 35 1 6.2069 -4.3023 -0.2599 36 1 4.0196 -3.9114 1.0105 37 1 4.0148 -5.3235 -0.0755 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769408681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:22 Heat of formation + Delta-G solvation = 27.488653 kcal Electronic energy + Delta-G solvation = -25624.600108 eV Core-core repulsion = 21785.710866 eV Total energy + Delta-G solvation = -3838.889242 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.34685 -37.76865 -37.34158 -37.25615 -35.92584 -34.51296 -33.89316 -31.20184 -30.28719 -29.96273 -27.42454 -26.50932 -23.37638 -22.99895 -22.50908 -21.95001 -20.09640 -18.75076 -18.25707 -17.57342 -16.54947 -16.52148 -16.17960 -15.75519 -15.03753 -14.89439 -14.40995 -14.09813 -13.79228 -13.66863 -13.53310 -13.41210 -13.27690 -12.99722 -12.34857 -12.25818 -12.15786 -12.15035 -12.08605 -11.61384 -11.53346 -11.18935 -10.87401 -10.81364 -10.50091 -10.38679 -10.28580 -10.08519 -10.02122 -9.82123 -9.07545 -8.92605 -8.54340 -6.76477 -5.87833 -3.32441 0.30003 0.94039 1.16098 2.47568 2.62293 2.94477 3.33798 3.41591 3.42329 3.59484 4.28920 4.41921 4.47341 4.60573 4.77981 4.94395 5.07985 5.15736 5.27419 5.41631 5.54683 5.65608 5.81314 5.92610 6.16475 6.16954 6.25915 6.32773 6.37242 6.51103 6.72348 6.78374 7.17631 7.39097 7.48558 7.71557 8.33118 9.09373 9.72097 10.28062 11.19882 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.004061 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.224108 B = 6893.820534 C = 7786.110384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.397 5.397 3 C 0.278 3.722 4 Cl 0.043 6.957 5 N -0.467 5.467 6 C 0.112 3.888 7 C -0.583 4.583 8 S 2.713 3.287 9 O -0.950 6.950 10 O -0.956 6.956 11 N -0.975 5.975 12 C 0.094 3.906 13 C 0.156 3.844 14 N -0.586 5.586 15 C -0.257 4.257 16 H 0.069 0.931 17 C 0.005 3.995 18 N -0.900 5.900 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.129 3.871 24 C 0.098 3.902 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.196 0.804 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.025 0.975 32 H 0.101 0.899 33 H 0.256 0.744 34 H 0.023 0.977 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 6.326 9.428 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.081 5.081 3 C -0.011 4.011 4 Cl 0.071 6.929 5 N -0.189 5.189 6 C -0.042 4.042 7 C -0.776 4.776 8 S 2.796 3.204 9 O -0.940 6.940 10 O -0.946 6.946 11 N -0.817 5.817 12 C -0.032 4.032 13 C 0.028 3.972 14 N -0.309 5.309 15 C -0.386 4.386 16 H 0.087 0.913 17 C -0.194 4.194 18 N -0.544 5.544 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.001 3.999 24 C -0.029 4.029 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.213 0.787 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.033 6.805 9.622 16.843 hybrid contribution 0.225 -0.116 -0.852 0.889 sum -11.808 6.688 8.770 16.158 Atomic orbital electron populations 1.22479 0.74919 1.05577 1.05892 1.44806 1.07744 1.03541 1.52036 1.23749 0.86848 0.84688 1.05820 1.98427 1.88827 1.08679 1.96998 1.70364 1.16180 1.12201 1.20138 1.22560 0.95522 0.90204 0.95945 1.34220 1.00322 1.15560 1.27471 1.01708 0.73313 0.71892 0.73507 1.93600 1.86218 1.79830 1.34331 1.93561 1.45124 1.86223 1.69707 1.57327 1.41153 1.64542 1.18641 1.22550 1.01507 1.02185 0.76937 1.21297 0.82852 0.95455 0.97585 1.43889 1.23855 1.61896 1.01230 1.19203 1.14336 1.11098 0.94010 0.91348 1.25053 0.99216 0.96172 0.98920 1.70013 1.49933 1.21396 1.13072 0.86274 0.79360 0.80914 0.80092 1.21383 1.21799 1.20387 1.21358 0.94144 0.97572 0.86863 1.22235 0.86989 0.99461 0.94190 0.88130 0.88292 0.88751 0.78719 0.90774 0.90339 0.95656 0.88099 0.93447 0.95967 0.91048 0.89965 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 10.26 59.84 0.61 1.13 16 2 N -0.40 -5.47 3.16 -121.41 -0.38 -5.85 16 3 C 0.28 4.01 8.51 -90.22 -0.77 3.25 16 4 Cl 0.04 0.47 28.77 -51.86 -1.49 -1.02 16 5 N -0.47 -7.85 11.26 -11.73 -0.13 -7.99 16 6 C 0.11 1.81 11.75 -17.80 -0.21 1.60 16 7 C -0.58 -8.93 6.92 -16.50 -0.11 -9.04 16 8 S 2.71 41.61 5.45 -107.50 -0.59 41.03 16 9 O -0.95 -15.86 16.71 -57.17 -0.96 -16.82 16 10 O -0.96 -15.50 15.51 -57.17 -0.89 -16.39 16 11 N -0.97 -15.61 3.20 -113.00 -0.36 -15.97 16 12 C 0.09 1.64 6.58 -3.37 -0.02 1.62 16 13 C 0.16 3.36 5.53 -3.37 -0.02 3.34 16 14 N -0.59 -13.25 2.97 -171.77 -0.51 -13.76 16 15 C -0.26 -6.51 9.58 -15.06 -0.14 -6.66 16 16 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 17 C 0.01 0.14 4.90 -17.43 -0.09 0.06 16 18 N -0.90 -24.77 11.20 55.49 0.62 -24.15 16 19 Si 0.90 20.68 29.59 -169.99 -5.03 15.65 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.13 2.33 6.67 -3.60 -0.02 2.31 16 24 C 0.10 1.51 6.55 -3.59 -0.02 1.48 16 25 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.10 0.66 7.81 -51.93 -0.41 0.25 16 27 H 0.09 0.87 7.35 -51.93 -0.38 0.49 16 28 H 0.20 2.96 5.91 -52.48 -0.31 2.65 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.26 7.08 -51.93 -0.37 0.89 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 2.46 5.99 -51.93 -0.31 2.15 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.02 0.40 5.99 -51.93 -0.31 0.09 16 35 H 0.07 1.24 7.94 -51.93 -0.41 0.83 16 36 H 0.08 1.09 7.09 -51.93 -0.37 0.72 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -31.95 330.32 -9.64 -41.59 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.11 Total: -0.39 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -0.79 Total: -0.91 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -0.77 Total: -67.72 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.84 Total: -33.21 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Atomic # 16 Polarization: 41.61 SS G_CDS: -0.59 Total: 41.03 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -1.49 Total: -1.02 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.95 -9.64 -41.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769408681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.083 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds