Wall clock time and date at job start Tue Mar 31 2020 18:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35105 * 126.41099 * 2 1 4 4 Cl 1.73602 * 125.66039 * 0.02562 * 3 2 1 5 5 N 1.30620 * 108.67485 * 180.02562 * 3 2 1 6 6 C 1.34198 * 109.25523 * 359.97438 * 5 3 2 7 7 C 1.34608 * 108.05294 * 359.73395 * 6 5 3 8 8 S 1.76192 * 126.58585 * 180.28565 * 7 6 5 9 9 O 1.42098 * 106.40704 * 83.70387 * 8 7 6 10 10 O 1.42105 * 106.40317 * 216.62398 * 8 7 6 11 11 N 1.65601 * 107.21736 * 330.16059 * 8 7 6 12 12 C 1.46968 * 120.59849 * 269.72141 * 11 8 7 13 13 C 1.53808 * 108.39568 * 124.75584 * 12 11 8 14 14 N 1.46968 * 108.58147 * 49.64118 * 13 12 11 15 15 C 1.36939 * 120.59141 * 124.61752 * 14 13 12 16 16 H 1.08000 * 119.99912 * 208.18095 * 15 14 13 17 17 C 1.38805 * 120.00026 * 28.19201 * 15 14 13 18 18 N 1.31617 * 120.00406 * 17.55081 * 17 15 14 19 19 Si 1.86802 * 119.99838 * 197.55623 * 17 15 14 20 20 H 1.48496 * 109.47520 * 89.99317 * 19 17 15 21 21 H 1.48497 * 109.47157 * 209.99541 * 19 17 15 22 22 H 1.48502 * 109.47187 * 329.99716 * 19 17 15 23 23 C 1.46959 * 118.81016 * 304.64526 * 14 13 12 24 24 C 1.46964 * 120.59034 * 90.00370 * 11 8 7 25 25 H 1.08993 * 109.47594 * 90.02095 * 1 2 3 26 26 H 1.09004 * 109.47207 * 330.02024 * 1 2 3 27 27 H 1.09000 * 109.47136 * 210.02900 * 1 2 3 28 28 H 1.08004 * 125.97284 * 180.02562 * 6 5 3 29 29 H 1.08996 * 109.61103 * 244.54295 * 12 11 8 30 30 H 1.08998 * 109.60779 * 5.05513 * 12 11 8 31 31 H 1.08995 * 109.74458 * 289.85150 * 13 12 11 32 32 H 1.09006 * 109.53106 * 169.30699 * 13 12 11 33 33 H 0.97000 * 120.00201 * 180.02562 * 18 17 15 34 34 H 1.08995 * 109.61297 * 295.47616 * 23 14 13 35 35 H 1.09001 * 109.75073 * 175.05180 * 23 14 13 36 36 H 1.08999 * 109.61766 * 354.94704 * 24 11 8 37 37 H 1.09000 * 109.61260 * 115.28940 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2669 1.0873 0.0000 4 17 1.7325 2.7390 0.0006 5 7 3.5110 0.6894 -0.0006 6 6 3.5466 -0.6521 -0.0004 7 6 2.2783 -1.1031 0.0063 8 16 1.7628 -2.7878 0.0165 9 8 1.7930 -3.2086 1.3734 10 8 0.5964 -2.8555 -0.7924 11 7 2.9287 -3.6619 -0.7703 12 6 2.8465 -3.8833 -2.2209 13 6 4.1535 -3.3874 -2.8624 14 7 5.2858 -3.9609 -2.1215 15 6 6.2494 -4.6846 -2.7720 16 1 6.7925 -5.4559 -2.2462 17 6 6.5282 -4.4266 -4.1070 18 7 6.1403 -3.2938 -4.6535 19 14 7.4541 -5.6873 -5.1283 20 1 6.4859 -6.6145 -5.7670 21 1 8.2405 -4.9922 -6.1788 22 1 8.3719 -6.4574 -4.2510 23 6 5.3650 -3.7444 -0.6701 24 6 4.0609 -4.2355 -0.0294 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 0.8902 0.5135 27 1 -0.3633 -0.8897 0.5143 28 1 4.4372 -1.2632 -0.0003 29 1 2.7175 -4.9467 -2.4220 30 1 2.0028 -3.3264 -2.6286 31 1 4.1979 -2.2995 -2.8137 32 1 4.1949 -3.7115 -3.9023 33 1 6.3348 -3.1137 -5.5865 34 1 5.4958 -2.6819 -0.4653 35 1 6.2069 -4.3023 -0.2599 36 1 4.0196 -3.9114 1.0105 37 1 4.0148 -5.3235 -0.0755 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769408681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:21 Heat of formation + Delta-G solvation = 5.420531 kcal Electronic energy + Delta-G solvation = -25625.557054 eV Core-core repulsion = 21785.710866 eV Total energy + Delta-G solvation = -3839.846188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45667 -39.26313 -38.53559 -38.30692 -37.20326 -35.72332 -35.40704 -32.92494 -31.83697 -31.12432 -28.34029 -28.19283 -25.05387 -24.49477 -23.67681 -23.10116 -21.57090 -20.09022 -19.44100 -18.93702 -17.95222 -17.65330 -17.54158 -17.01157 -16.67426 -16.14795 -15.68743 -15.45919 -15.44839 -15.23872 -14.77808 -14.61618 -14.37224 -14.10326 -13.64686 -13.63740 -13.44363 -13.18379 -13.17474 -13.01215 -12.93067 -12.66411 -12.61017 -12.45688 -12.09304 -11.96111 -11.78558 -11.58073 -11.43447 -11.16225 -10.57259 -10.30746 -10.14125 -8.59575 -7.82533 -5.28534 -0.93237 -0.09532 0.03335 1.42701 1.50505 1.51803 1.54265 1.61426 1.70889 2.39228 2.55713 3.25221 3.32515 3.46069 3.48798 3.62949 3.74604 3.99596 4.08655 4.31347 4.42142 4.46383 4.49307 4.61053 4.69339 4.73471 4.91635 5.00902 5.14179 5.24288 5.34180 5.37892 5.58972 5.69560 5.77106 6.25236 6.42687 7.18323 7.88474 8.40037 9.22576 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.004061 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.224108 B = 6893.820534 C = 7786.110384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.395 5.395 3 C 0.274 3.726 4 Cl 0.073 6.927 5 N -0.502 5.502 6 C 0.097 3.903 7 C -0.589 4.589 8 S 2.736 3.264 9 O -0.959 6.959 10 O -0.962 6.962 11 N -0.976 5.976 12 C 0.108 3.892 13 C 0.162 3.838 14 N -0.604 5.604 15 C -0.257 4.257 16 H 0.073 0.927 17 C -0.046 4.046 18 N -0.934 5.934 19 Si 0.962 3.038 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.269 1.269 23 C 0.123 3.877 24 C 0.103 3.897 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.099 0.901 28 H 0.196 0.804 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.004 0.996 32 H 0.069 0.931 33 H 0.249 0.751 34 H 0.026 0.974 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.043 6.105 10.670 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.079 5.079 3 C -0.016 4.016 4 Cl 0.101 6.899 5 N -0.224 5.224 6 C -0.057 4.057 7 C -0.784 4.784 8 S 2.820 3.180 9 O -0.949 6.949 10 O -0.952 6.952 11 N -0.817 5.817 12 C -0.018 4.018 13 C 0.035 3.965 14 N -0.327 5.327 15 C -0.387 4.387 16 H 0.090 0.910 17 C -0.242 4.242 18 N -0.580 5.580 19 Si 0.791 3.209 20 H -0.213 1.213 21 H -0.229 1.229 22 H -0.194 1.194 23 C -0.004 4.004 24 C -0.023 4.023 25 H 0.131 0.869 26 H 0.148 0.852 27 H 0.118 0.882 28 H 0.213 0.787 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.022 0.978 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.353 6.564 10.905 18.448 hybrid contribution 0.585 0.065 -1.161 1.302 sum -12.769 6.629 9.744 17.376 Atomic orbital electron populations 1.22931 0.72597 1.07506 1.07370 1.45057 1.09113 1.02803 1.50891 1.24032 0.86585 0.86146 1.04789 1.98437 1.88398 1.06259 1.96803 1.70302 1.17914 1.12611 1.21557 1.22647 0.96068 0.90397 0.96619 1.34109 1.00356 1.15925 1.27972 1.00995 0.72677 0.71432 0.72900 1.93587 1.86319 1.80193 1.34779 1.93549 1.45466 1.86372 1.69836 1.57314 1.41562 1.64876 1.17965 1.22252 0.99412 1.02556 0.77595 1.21066 0.84861 0.94091 0.96481 1.44124 1.23754 1.61846 1.02973 1.19540 1.13991 1.10904 0.94267 0.90959 1.25700 1.00802 0.97594 1.00089 1.70162 1.51933 1.23129 1.12770 0.85346 0.78227 0.78846 0.78457 1.21318 1.22891 1.19372 1.21550 0.96230 0.98113 0.84507 1.22212 0.85126 0.99974 0.94996 0.86873 0.85178 0.88202 0.78744 0.90090 0.88872 0.97835 0.91234 0.94221 0.95607 0.90304 0.87354 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.26 127.77 1.31 1.91 16 2 N -0.40 -10.20 3.16 -538.03 -1.70 -11.90 16 3 C 0.27 7.55 8.51 180.21 1.53 9.09 16 4 Cl 0.07 1.46 28.77 -2.72 -0.08 1.38 16 5 N -0.50 -16.66 11.26 -191.04 -2.15 -18.81 16 6 C 0.10 3.12 11.75 83.50 0.98 4.10 16 7 C -0.59 -17.31 6.92 83.05 0.57 -16.73 16 8 S 2.74 78.64 5.45 -56.49 -0.31 78.34 16 9 O -0.96 -29.75 16.71 -128.00 -2.14 -31.89 16 10 O -0.96 -29.07 15.51 -128.00 -1.99 -31.05 16 11 N -0.98 -29.67 3.20 -511.43 -1.64 -31.31 16 12 C 0.11 3.67 6.58 86.56 0.57 4.24 16 13 C 0.16 7.12 5.53 86.56 0.48 7.60 16 14 N -0.60 -27.29 2.97 -697.36 -2.07 -29.36 16 15 C -0.26 -13.01 9.58 84.03 0.80 -12.21 16 16 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 17 C -0.05 -2.44 4.90 84.86 0.42 -2.03 16 18 N -0.93 -52.84 11.20 21.65 0.24 -52.60 16 19 Si 0.96 42.98 29.59 68.60 2.03 45.01 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 C 0.12 4.34 6.67 86.42 0.58 4.91 16 24 C 0.10 2.96 6.55 86.42 0.57 3.53 16 25 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.13 1.32 7.81 -2.38 -0.02 1.30 16 27 H 0.10 1.59 7.35 -2.39 -0.02 1.57 16 28 H 0.20 5.94 5.91 -2.91 -0.02 5.92 16 29 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.09 2.88 7.08 -2.39 -0.02 2.86 16 31 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.07 3.50 5.99 -2.38 -0.01 3.48 16 33 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 34 H 0.03 0.91 5.99 -2.39 -0.01 0.90 16 35 H 0.08 2.63 7.94 -2.39 -0.02 2.62 16 36 H 0.11 2.59 7.09 -2.39 -0.02 2.57 16 37 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -68.18 330.32 -0.87 -69.05 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.11 Total: 8.72 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 7.81 Total: 4.41 kcal Atomic # 7 Polarization: -136.66 SS G_CDS: -7.32 Total: -143.97 kcal Atomic # 8 Polarization: -58.82 SS G_CDS: -4.12 Total: -62.94 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 78.64 SS G_CDS: -0.31 Total: 78.34 kcal Atomic # 17 Polarization: 1.46 SS G_CDS: -0.08 Total: 1.38 kcal Total: -68.18 -0.87 -69.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769408681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.472 kcal (2) G-P(sol) polarization free energy of solvation -68.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds