Wall clock time and date at job start Tue Mar 31 2020 18:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48501 * 109.46797 * 240.00184 * 3 2 1 5 5 H 1.48497 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47163 * 120.00011 * 3 2 1 7 7 C 1.38952 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99407 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99741 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00123 * 359.97438 * 10 9 7 12 12 C 1.50709 * 119.99806 * 180.02562 * 10 9 7 13 13 O 1.45199 * 109.46943 * 179.97438 * 12 10 9 14 14 C 1.34839 * 116.99770 * 179.97438 * 13 12 10 15 15 O 1.21581 * 120.00452 * 359.97438 * 14 13 12 16 16 C 1.46917 * 120.00366 * 180.02562 * 14 13 12 17 17 N 1.35960 * 126.62803 * 354.32165 * 16 14 13 18 18 C 1.29893 * 108.74096 * 179.97438 * 17 16 14 19 19 O 1.34080 * 109.81001 * 359.77258 * 18 17 16 20 20 C 1.34746 * 108.25975 * 0.37755 * 19 18 17 21 21 C 1.47510 * 126.77486 * 179.89813 * 20 19 18 22 22 C 1.39732 * 120.13051 * 126.81485 * 21 20 19 23 23 C 1.37856 * 119.86399 * 179.72122 * 22 21 20 24 24 C 1.38634 * 120.13130 * 0.54905 * 23 22 21 25 25 F 1.35094 * 119.86705 * 179.69759 * 24 23 22 26 26 C 1.38635 * 120.26251 * 359.72359 * 24 23 22 27 27 C 1.37853 * 120.13262 * 0.02562 * 26 24 23 28 28 H 0.97006 * 119.99733 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00286 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47228 * 59.99637 * 12 10 9 31 31 H 1.09000 * 109.46661 * 299.99454 * 12 10 9 32 32 H 1.08000 * 125.09687 * 179.97438 * 18 17 16 33 33 H 1.07995 * 120.06639 * 359.96906 * 22 21 20 34 34 H 1.07999 * 119.92977 * 180.27194 * 23 22 21 35 35 H 1.08000 * 119.93247 * 179.97438 * 26 24 23 36 36 H 1.07994 * 120.06428 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 8 2.1871 -5.9666 -0.0016 14 6 1.6717 -7.2126 -0.0016 15 8 0.4664 -7.3719 -0.0008 16 6 2.5665 -8.3778 -0.0016 17 7 3.9217 -8.3598 -0.1094 18 6 4.3598 -9.5820 -0.0693 19 8 3.3300 -10.4295 0.0685 20 6 2.1924 -9.7086 0.1090 21 6 0.8202 -10.2313 0.2497 22 6 -0.0176 -9.7408 1.2547 23 6 -1.3010 -10.2291 1.3775 24 6 -1.7569 -11.2129 0.5137 25 9 -3.0135 -11.6919 0.6428 26 6 -0.9283 -11.7074 -0.4817 27 6 0.3552 -11.2233 -0.6177 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6172 -4.9205 -0.8913 31 1 0.6167 -4.9209 0.8887 32 1 5.3982 -9.8719 -0.1339 33 1 0.3381 -8.9779 1.9312 34 1 -1.9509 -9.8476 2.1511 35 1 -1.2889 -12.4741 -1.1515 36 1 0.9996 -11.6090 -1.3937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770474528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:34 Heat of formation + Delta-G solvation = -105.360880 kcal Electronic energy + Delta-G solvation = -26846.392466 eV Core-core repulsion = 22405.669358 eV Total energy + Delta-G solvation = -4440.723108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.084 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.28315 -43.67860 -40.17320 -39.26815 -38.09960 -36.13842 -35.20950 -33.97432 -32.63589 -31.63743 -31.36046 -29.40538 -28.29564 -25.30935 -24.27245 -23.82019 -23.27779 -21.99657 -20.80613 -19.56239 -18.66089 -18.08882 -18.04253 -17.38129 -17.31081 -16.64614 -16.43037 -16.18138 -15.95176 -15.89223 -15.32497 -14.80831 -14.53109 -14.37422 -14.11282 -13.94817 -13.94574 -13.60372 -13.01298 -12.85632 -12.73904 -12.38716 -12.02355 -11.67253 -11.59991 -11.51491 -11.09612 -11.04022 -10.77597 -10.47113 -10.43110 -10.27187 -9.76950 -9.57231 -9.53570 -8.74985 -8.49325 -8.05843 -6.47788 -3.89619 0.10000 0.83269 0.94211 1.70733 2.04833 2.56326 2.90786 3.13887 3.17415 3.24252 3.29071 3.75075 3.76381 3.81675 4.04579 4.13372 4.31411 4.40280 4.55090 4.76214 4.86284 4.90221 5.06942 5.16678 5.20061 5.42812 5.46297 5.48373 5.66511 5.68973 5.73205 5.75820 5.89582 6.06052 6.37045 6.46889 7.11756 7.49951 7.76285 7.96836 8.51234 9.09504 9.41519 9.92026 10.69475 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.002463 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.575912 B =11366.115148 C =12925.920535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.571 6.571 12 C 0.060 3.940 13 O -0.302 6.302 14 C 0.546 3.454 15 O -0.497 6.497 16 C -0.029 4.029 17 N -0.434 5.434 18 C 0.181 3.819 19 O -0.188 6.188 20 C 0.085 3.915 21 C -0.043 4.043 22 C -0.022 4.022 23 C -0.152 4.152 24 C 0.120 3.880 25 F -0.135 7.135 26 C -0.159 4.159 27 C -0.055 4.055 28 H 0.274 0.726 29 H 0.395 0.605 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.262 0.738 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 -25.660 0.857 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.123 0.877 9 N -0.191 5.191 10 C 0.223 3.777 11 O -0.454 6.454 12 C -0.018 4.018 13 O -0.215 6.215 14 C 0.389 3.611 15 O -0.386 6.386 16 C -0.148 4.148 17 N -0.161 5.161 18 C -0.047 4.047 19 O -0.075 6.075 20 C 0.028 3.972 21 C -0.044 4.044 22 C -0.040 4.040 23 C -0.170 4.170 24 C 0.101 3.899 25 F -0.114 7.114 26 C -0.178 4.178 27 C -0.073 4.073 28 H 0.084 0.916 29 H 0.228 0.772 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.277 0.723 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.501 -24.970 0.801 24.988 hybrid contribution -0.752 0.300 -0.010 0.810 sum -1.254 -24.670 0.792 24.715 Atomic orbital electron populations 1.69610 1.05983 1.28543 1.49757 1.25303 0.95686 0.99826 0.96933 0.85858 0.78747 0.80087 0.79205 1.19750 1.20888 1.19762 1.19678 0.93463 0.81754 1.48193 0.87670 1.41678 1.09329 1.04012 1.64058 1.19280 0.88360 0.84002 0.86030 1.90586 1.13345 1.86676 1.54842 1.22849 0.90816 0.84465 1.03664 1.86736 1.39365 1.13185 1.82230 1.19324 0.85515 0.82881 0.73379 1.90911 1.14534 1.86754 1.46442 1.20815 0.90229 0.91081 1.12708 1.70902 1.08164 1.22149 1.14855 1.28265 0.94293 0.82041 1.00108 1.84517 1.14833 1.39504 1.68619 1.21555 0.86201 0.88473 1.00926 1.17463 0.87588 0.99984 0.99316 1.20957 0.92001 0.96041 0.95013 1.21048 0.96835 0.97966 1.01179 1.17917 0.79945 0.95310 0.96727 1.91525 1.37733 1.86845 1.95259 1.21010 0.94136 1.03111 0.99515 1.21060 0.95139 0.93674 0.97434 0.91608 0.77171 0.89290 0.89294 0.72291 0.84441 0.83704 0.83942 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.55 -14.12 5.29 -10.96 -0.06 -14.18 16 10 C 0.44 10.80 7.86 -10.98 -0.09 10.71 16 11 O -0.57 -16.36 16.08 -14.11 -0.23 -16.58 16 12 C 0.06 1.16 5.96 36.01 0.21 1.37 16 13 O -0.30 -6.06 9.77 -47.56 -0.46 -6.52 16 14 C 0.55 9.28 7.90 34.24 0.27 9.55 16 15 O -0.50 -8.28 13.86 -19.33 -0.27 -8.55 16 16 C -0.03 -0.42 7.10 -82.36 -0.58 -1.01 16 17 N -0.43 -6.12 11.34 -11.05 -0.13 -6.24 16 18 C 0.18 1.59 13.16 51.94 0.68 2.28 16 19 O -0.19 -1.77 10.74 5.08 0.05 -1.72 16 20 C 0.08 0.98 6.83 -35.64 -0.24 0.74 16 21 C -0.04 -0.45 5.21 -105.00 -0.55 -1.00 16 22 C -0.02 -0.23 7.82 -39.16 -0.31 -0.53 16 23 C -0.15 -1.40 10.01 -39.58 -0.40 -1.80 16 24 C 0.12 1.11 7.30 -39.29 -0.29 0.82 16 25 F -0.14 -1.32 17.26 2.25 0.04 -1.28 16 26 C -0.16 -1.26 10.01 -39.58 -0.40 -1.66 16 27 C -0.05 -0.46 9.79 -39.16 -0.38 -0.85 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.26 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.14 1.41 7.78 -52.49 -0.41 1.00 16 34 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -35.09 342.02 -5.27 -40.36 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -2.78 Total: 6.54 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -2.30 Total: 10.65 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.54 Total: -43.91 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.90 Total: -33.38 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.09 -5.27 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770474528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.996 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds