Wall clock time and date at job start Tue Mar 31 2020 17:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42910 * 114.00228 * 2 1 4 4 C 1.50691 * 109.47206 * 179.97438 * 3 2 1 5 5 N 1.28654 * 124.71817 * 90.00227 * 4 3 2 6 6 C 1.33565 * 115.76583 * 179.97438 * 5 4 3 7 7 C 1.47263 * 123.14303 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00132 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99630 * 0.02562 * 7 6 5 10 10 S 1.65602 * 119.99511 * 179.72180 * 9 7 6 11 11 O 1.42109 * 104.27511 * 181.34842 * 10 9 7 12 12 O 1.42098 * 104.28120 * 309.20840 * 10 9 7 13 13 C 1.81394 * 104.44973 * 65.28308 * 10 9 7 14 14 C 1.53003 * 109.47387 * 179.97438 * 13 10 9 15 15 C 1.50707 * 109.47138 * 179.97438 * 14 13 10 16 16 H 1.08001 * 119.99608 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99869 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00048 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00033 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47350 * 90.00089 * 19 17 15 21 21 H 1.48501 * 109.47193 * 209.99843 * 19 17 15 22 22 H 1.48501 * 109.47022 * 329.99922 * 19 17 15 23 23 C 1.35210 * 113.71326 * 0.24655 * 6 5 4 24 24 S 1.70770 * 124.72324 * 270.00138 * 4 3 2 25 25 H 1.09000 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46891 * 300.00200 * 1 2 3 27 27 H 1.09002 * 109.46995 * 60.00133 * 1 2 3 28 28 H 1.09002 * 109.46714 * 59.99630 * 3 2 1 29 29 H 1.08995 * 109.46849 * 300.00258 * 3 2 1 30 30 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 31 31 H 1.09009 * 109.47044 * 299.99503 * 13 10 9 32 32 H 1.09001 * 109.47747 * 59.99183 * 13 10 9 33 33 H 1.09000 * 109.46375 * 299.99213 * 14 13 10 34 34 H 1.08993 * 109.47045 * 59.99537 * 14 13 10 35 35 H 0.97005 * 119.99955 * 180.02562 * 18 17 15 36 36 H 1.08007 * 125.58170 * 179.75441 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2434 1.1285 -1.0565 6 6 5.5586 1.0248 -0.8481 7 6 6.5432 0.9462 -1.9405 8 8 7.7287 0.8524 -1.6851 9 7 6.1305 0.9783 -3.2231 10 16 7.2382 0.8969 -4.4514 11 8 6.4567 0.9888 -5.6347 12 8 8.1959 1.8951 -4.1265 13 6 7.9655 -0.7576 -4.2961 14 6 9.0169 -0.9573 -5.3896 15 6 9.6215 -2.3317 -5.2601 16 1 9.2894 -2.9960 -4.4760 17 6 10.5986 -2.7409 -6.1425 18 7 11.1259 -3.9404 -6.0299 19 14 11.1725 -1.5920 -7.4990 20 1 12.3094 -0.7734 -7.0065 21 1 11.6094 -2.3906 -8.6723 22 1 10.0550 -0.6986 -7.8968 23 6 5.9011 0.9930 0.4595 24 16 4.4816 1.1099 1.4046 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 5.1851 1.0535 -3.4268 31 1 8.4351 -0.8577 -3.3175 32 1 7.1837 -1.5097 -4.4025 33 1 8.5469 -0.8575 -6.3680 34 1 9.7987 -0.2053 -5.2835 35 1 11.8137 -4.2281 -6.6506 36 1 6.9070 0.9090 0.8438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776124044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:43 Heat of formation + Delta-G solvation = -105.413439 kcal Electronic energy + Delta-G solvation = -23663.573902 eV Core-core repulsion = 19788.672548 eV Total energy + Delta-G solvation = -3874.901354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99548 -39.29727 -38.18347 -36.79141 -35.73589 -34.50264 -33.93245 -32.10755 -31.47368 -28.69544 -26.70246 -26.06187 -25.70797 -22.41830 -21.29003 -20.51816 -19.53517 -19.36448 -17.90918 -17.15219 -17.10871 -16.71677 -16.40752 -16.14129 -16.00188 -15.38946 -15.22147 -14.98978 -14.35162 -14.24071 -14.14986 -13.63461 -13.25644 -12.81936 -12.78272 -12.58836 -12.36029 -11.99470 -11.90795 -11.84478 -11.73104 -11.26358 -11.21529 -10.91590 -10.66547 -10.43708 -10.40583 -10.27255 -10.14536 -10.10001 -9.62384 -9.47246 -9.32759 -8.63270 -6.13408 -4.14701 -0.02019 0.37251 0.71658 1.11990 1.32281 2.60158 2.76387 3.10501 3.29773 3.36536 3.40493 3.62823 3.94366 4.18112 4.37684 4.38743 4.53618 4.65585 4.71282 4.82799 4.84941 4.91556 4.94326 5.18033 5.20897 5.33206 5.51031 5.56282 6.28317 6.46606 6.52550 6.82577 6.92504 6.95650 7.35079 7.56462 8.39564 8.87828 9.45711 10.98951 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.002704 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.527779 B =10350.882201 C =10420.426046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.140 3.860 4 C 0.014 3.986 5 N -0.421 5.421 6 C 0.002 3.998 7 C 0.621 3.379 8 O -0.480 6.480 9 N -1.044 6.044 10 S 2.565 3.435 11 O -0.950 6.950 12 O -0.937 6.937 13 C -0.569 4.569 14 C -0.005 4.005 15 C -0.518 4.518 16 H 0.079 0.921 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.870 3.130 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 C -0.212 4.212 24 S 0.254 5.746 25 H 0.092 0.908 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.437 0.563 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.459 11.840 17.915 31.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.061 3.939 4 C -0.265 4.265 5 N -0.138 5.138 6 C -0.135 4.135 7 C 0.405 3.595 8 O -0.351 6.351 9 N -0.805 5.805 10 S 2.665 3.335 11 O -0.940 6.940 12 O -0.927 6.927 13 C -0.703 4.703 14 C -0.045 4.045 15 C -0.557 4.557 16 H 0.097 0.903 17 C -0.131 4.131 18 N -0.533 5.533 19 Si 0.696 3.304 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.186 1.186 23 C -0.354 4.354 24 S 0.511 5.489 25 H 0.110 0.890 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.273 0.727 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -21.688 12.265 17.958 30.712 hybrid contribution 0.328 0.042 -1.273 1.316 sum -21.360 12.307 16.684 29.767 Atomic orbital electron populations 1.22825 0.79717 1.03535 1.00402 1.87974 1.20507 1.26062 1.95540 1.20781 0.84008 0.86310 1.02833 1.26599 1.00894 1.06894 0.92141 1.66794 1.02891 1.12490 1.31634 1.20168 0.90014 1.10119 0.93212 1.16892 0.87012 0.73987 0.81654 1.91036 1.15292 1.45538 1.83276 1.55164 1.26291 1.79438 1.19578 1.06732 0.74242 0.79777 0.72784 1.93604 1.69007 1.87697 1.43731 1.93604 1.60774 1.55846 1.82466 1.30189 1.11478 1.17365 1.11304 1.19442 0.92666 1.00678 0.91709 1.20818 1.21183 0.97279 1.16417 0.90309 1.24972 0.95662 0.95104 0.97339 1.69882 1.27461 1.18232 1.37742 0.86919 0.80055 0.81398 0.82045 1.19613 1.20747 1.18604 1.26863 1.06975 1.04735 0.96837 1.82867 0.93962 1.61828 1.10261 0.88969 0.93651 0.93431 0.90573 0.89667 0.72658 0.84460 0.85263 0.94784 0.95057 0.92371 0.78408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.00 10.69 -35.23 -0.38 -3.38 16 3 C 0.14 0.86 6.51 36.00 0.23 1.10 16 4 C 0.01 0.12 6.97 -13.61 -0.09 0.03 16 5 N -0.42 -4.78 10.12 -8.51 -0.09 -4.86 16 6 C 0.00 0.03 6.70 -84.52 -0.57 -0.54 16 7 C 0.62 9.41 7.54 -12.59 -0.09 9.32 16 8 O -0.48 -8.54 14.82 -11.97 -0.18 -8.71 16 9 N -1.04 -15.29 5.60 30.40 0.17 -15.12 16 10 S 2.56 47.13 5.11 -107.50 -0.55 46.59 16 11 O -0.95 -18.73 18.08 -57.54 -1.04 -19.77 16 12 O -0.94 -20.06 17.03 -64.81 -1.10 -21.16 16 13 C -0.57 -11.31 5.83 37.16 0.22 -11.09 16 14 C -0.01 -0.13 4.05 -27.88 -0.11 -0.25 16 15 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 16 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 19 Si 0.87 21.86 27.47 -169.99 -4.67 17.19 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 23 C -0.21 -2.03 10.62 29.65 0.31 -1.72 16 24 S 0.25 1.68 22.92 -107.50 -2.46 -0.79 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.44 5.24 8.31 -34.47 -0.29 4.95 16 31 H 0.14 2.69 7.20 -51.92 -0.37 2.31 16 32 H 0.13 2.27 8.14 -51.92 -0.42 1.85 16 33 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 34 H 0.03 0.76 7.57 -51.93 -0.39 0.37 16 35 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.20 1.63 8.03 -52.48 -0.42 1.21 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -38.05 344.35 -7.72 -45.77 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.97 Total: 0.87 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 0.58 Total: -15.09 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.86 Total: -46.72 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -2.70 Total: -53.02 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Atomic # 16 Polarization: 48.81 SS G_CDS: -3.01 Total: 45.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -38.05 -7.72 -45.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776124044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.639 kcal (2) G-P(sol) polarization free energy of solvation -38.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds