Wall clock time and date at job start Tue Mar 31 2020 18:21:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31410 * 1
3 3 Si 1.86800 * 119.99531 * 2 1
4 4 H 1.48504 * 109.46848 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47425 * 299.99869 * 3 2 1
6 6 H 1.48495 * 109.47478 * 60.00000 * 3 2 1
7 7 C 1.38946 * 120.00424 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00368 * 179.97438 * 7 2 1
9 9 N 1.37104 * 119.99669 * 359.97438 * 7 2 1
10 10 C 1.34781 * 119.99762 * 179.97438 * 9 7 2
11 11 O 1.21298 * 119.99845 * 0.02562 * 10 9 7
12 12 C 1.50695 * 119.99913 * 180.02562 * 10 9 7
13 13 N 1.46495 * 109.47207 * 180.02562 * 12 10 9
14 14 C 1.34775 * 120.00355 * 180.02562 * 13 12 10
15 15 O 1.21279 * 119.99545 * 359.97438 * 14 13 12
16 16 C 1.50702 * 120.00094 * 179.97438 * 14 13 12
17 17 F 1.39902 * 109.47039 * 85.36623 * 16 14 13
18 18 F 1.39895 * 109.47239 * 325.36516 * 16 14 13
19 19 C 1.50702 * 109.46904 * 205.36162 * 16 14 13
20 20 C 1.38417 * 120.02424 * 247.64514 * 19 16 14
21 21 F 1.35104 * 120.01561 * 359.70982 * 20 19 16
22 22 C 1.38471 * 119.97336 * 179.97438 * 20 19 16
23 23 C 1.38209 * 120.02917 * 0.02562 * 22 20 19
24 24 C 1.38205 * 120.04676 * 359.97438 * 23 22 20
25 25 C 1.38414 * 120.02502 * 67.62576 * 19 16 14
26 26 F 1.35103 * 120.01570 * 0.02562 * 25 19 16
27 27 H 0.97005 * 120.00643 * 0.02562 * 1 2 3
28 28 H 0.96993 * 119.99970 * 359.97438 * 9 7 2
29 29 H 1.09007 * 109.46868 * 59.99865 * 12 10 9
30 30 H 1.08995 * 109.46845 * 300.00011 * 12 10 9
31 31 H 0.97003 * 120.00174 * 359.97438 * 13 12 10
32 32 H 1.08005 * 119.98853 * 180.02562 * 22 20 19
33 33 H 1.07993 * 119.97977 * 180.02562 * 23 22 20
34 34 H 1.08000 * 119.99146 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 3.7080 1.3465 0.0006
5 1 1.8892 2.3965 -1.2125
6 1 1.8892 2.3965 1.2124
7 6 2.0089 -1.2033 0.0005
8 1 3.0889 -1.2032 0.0001
9 7 1.3234 -2.3906 0.0016
10 6 1.9974 -3.5578 0.0016
11 8 3.2104 -3.5577 0.0011
12 6 1.2440 -4.8629 0.0022
13 7 2.1960 -5.9764 0.0027
14 6 1.7468 -7.2471 0.0027
15 8 0.5545 -7.4687 0.0028
16 6 2.7262 -8.3925 0.0027
17 9 3.1104 -8.6776 1.3173
18 9 3.8540 -8.0416 -0.7470
19 6 2.0768 -9.6086 -0.6059
20 6 1.8012 -10.7135 0.1811
21 9 2.1197 -10.7044 1.4940
22 6 1.2040 -11.8301 -0.3790
23 6 0.8835 -11.8421 -1.7234
24 6 1.1582 -10.7395 -2.5101
25 6 1.7551 -9.6215 -1.9520
26 9 2.0236 -8.5438 -2.7214
27 1 -0.4851 0.8400 -0.0004
28 1 0.3535 -2.3906 0.0024
29 1 0.6169 -4.9208 -0.8876
30 1 0.6177 -4.9204 0.8924
31 1 3.1497 -5.7991 0.0022
32 1 0.9885 -12.6922 0.2349
33 1 0.4174 -12.7133 -2.1593
34 1 0.9078 -10.7499 -3.5606
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000804821191.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:21:48
Heat of formation + Delta-G solvation = -220.785752 kcal
Electronic energy + Delta-G solvation = -28579.977853 eV
Core-core repulsion = 23592.392807 eV
Total energy + Delta-G solvation = -4987.585046 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 334.073 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-49.79505 -49.44606 -49.04643 -47.42339 -39.90565 -39.15963 -38.20267 -34.72925
-33.86449 -32.67853 -31.44599 -30.80516 -28.81745 -26.78096 -24.62475 -23.41726
-23.01056 -20.87078 -19.83458 -18.78626 -18.74912 -18.32000 -18.07110 -17.77038
-16.96078 -16.33287 -16.11752 -16.00768 -15.65484 -15.61143 -15.36565 -15.28577
-15.06034 -14.86820 -14.36900 -14.18515 -13.81008 -13.76338 -13.74110 -13.46385
-13.20133 -13.10326 -12.46514 -12.42783 -12.32082 -12.10290 -11.76953 -11.67420
-11.17270 -10.43321 -10.37316 -10.20503 -9.69526 -9.66372 -9.21758 -9.15699
-8.71835 -8.15359 -6.55809 -3.97951 0.28969 0.49548 2.04916 2.40465
2.80366 3.07758 3.17484 3.21074 3.27880 3.34568 3.66115 3.67977
3.84186 3.97527 4.07220 4.23555 4.41361 4.61993 4.65886 4.74314
5.10670 5.12110 5.25435 5.38382 5.48481 5.62967 5.70022 5.79085
5.92642 6.18300 6.28821 7.27750 7.42711 7.80102 7.91486 8.39073
8.99969 9.32825 9.80259 10.60957
Molecular weight = 334.07amu
Principal moments of inertia in cm(-1)
A = 0.026320 B = 0.002631 C = 0.002572
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1063.576746 B =10638.286836 C =10884.137702
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.026 3.974
3 Si 0.933 3.067
4 H -0.267 1.267
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.305 4.305
8 H 0.107 0.893
9 N -0.546 5.546
10 C 0.426 3.574
11 O -0.594 6.594
12 C 0.106 3.894
13 N -0.679 5.679
14 C 0.487 3.513
15 O -0.503 6.503
16 C 0.340 3.660
17 F -0.163 7.163
18 F -0.171 7.171
19 C -0.221 4.221
20 C 0.174 3.826
21 F -0.113 7.113
22 C -0.169 4.169
23 C -0.039 4.039
24 C -0.167 4.167
25 C 0.176 3.824
26 F -0.115 7.115
27 H 0.274 0.726
28 H 0.396 0.604
29 H 0.092 0.908
30 H 0.092 0.908
31 H 0.419 0.581
32 H 0.152 0.848
33 H 0.151 0.849
34 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.158 -24.104 -3.400 24.343
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.177 4.177
3 Si 0.760 3.240
4 H -0.191 1.191
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.434 4.434
8 H 0.125 0.875
9 N -0.180 5.180
10 C 0.211 3.789
11 O -0.480 6.480
12 C -0.021 4.021
13 N -0.333 5.333
14 C 0.266 3.734
15 O -0.378 6.378
16 C 0.300 3.700
17 F -0.144 7.144
18 F -0.152 7.152
19 C -0.225 4.225
20 C 0.155 3.845
21 F -0.091 7.091
22 C -0.188 4.188
23 C -0.057 4.057
24 C -0.186 4.186
25 C 0.156 3.844
26 F -0.093 7.093
27 H 0.084 0.916
28 H 0.230 0.770
29 H 0.110 0.890
30 H 0.110 0.890
31 H 0.259 0.741
32 H 0.169 0.831
33 H 0.169 0.831
34 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -0.278 -23.966 -3.353 24.201
hybrid contribution 0.489 1.216 0.216 1.328
sum 0.211 -22.751 -3.136 22.967
Atomic orbital electron populations
1.69619 1.06041 1.28535 1.49152 1.25340 0.95681 1.00000 0.96649
0.85741 0.79726 0.80684 0.77860 1.19066 1.20559 1.20566 1.19799
0.93550 0.81859 1.48217 0.87506 1.41778 1.09498 1.04403 1.62363
1.19595 0.88292 0.84814 0.86161 1.90527 1.13546 1.86625 1.57309
1.21144 0.91600 0.85410 1.03950 1.45632 1.12796 1.03953 1.70883
1.20275 0.89259 0.84117 0.79736 1.90771 1.14585 1.83832 1.48650
1.19369 0.82564 0.92130 0.75926 1.93153 1.91732 1.94200 1.35303
1.93136 1.53358 1.92718 1.75989 1.19918 1.11354 0.96359 0.94839
1.17025 0.95980 0.93211 0.78332 1.91623 1.89839 1.96587 1.31067
1.21228 1.02690 0.98150 0.96714 1.21020 0.94734 0.97708 0.92221
1.21231 1.02564 0.92431 1.02358 1.17039 0.95928 0.84780 0.86616
1.91623 1.90969 1.52675 1.74063 0.91564 0.76989 0.89028 0.89035
0.74102 0.83063 0.83102 0.83007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.63 13.05 55.50 0.72 -22.91 16
2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16
3 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16
4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16
6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16
7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16
8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16
9 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16
10 C 0.43 9.76 7.85 -10.99 -0.09 9.67 16
11 O -0.59 -15.32 15.24 5.54 0.08 -15.24 16
12 C 0.11 1.94 6.15 -5.20 -0.03 1.91 16
13 N -0.68 -12.03 5.46 -61.48 -0.34 -12.37 16
14 C 0.49 8.31 6.71 -10.99 -0.07 8.24 16
15 O -0.50 -9.31 16.24 5.56 0.09 -9.22 16
16 C 0.34 5.17 2.03 -29.03 -0.06 5.12 16
17 F -0.16 -2.50 14.54 2.25 0.03 -2.47 16
18 F -0.17 -2.58 15.82 2.25 0.04 -2.55 16
19 C -0.22 -2.92 4.44 -104.49 -0.46 -3.38 16
20 C 0.17 1.97 7.21 -39.43 -0.28 1.68 16
21 F -0.11 -1.40 14.84 2.25 0.03 -1.37 16
22 C -0.17 -1.26 10.02 -39.51 -0.40 -1.65 16
23 C -0.04 -0.23 10.04 -39.60 -0.40 -0.63 16
24 C -0.17 -1.32 10.03 -39.50 -0.40 -1.72 16
25 C 0.18 2.09 6.95 -39.43 -0.27 1.81 16
26 F -0.12 -1.56 16.00 2.25 0.04 -1.53 16
27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16
28 H 0.40 9.29 7.90 -40.82 -0.32 8.97 16
29 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16
30 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16
31 H 0.42 7.54 6.98 -40.82 -0.29 7.25 16
32 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16
33 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16
34 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16
LS Contribution 324.78 15.07 4.89 4.89
Total: -1.00 -31.61 324.78 -4.42 -36.03
By element:
Atomic # 1 Polarization: 13.75 SS G_CDS: -2.23 Total: 11.51 kcal
Atomic # 6 Polarization: 15.96 SS G_CDS: -2.70 Total: 13.26 kcal
Atomic # 7 Polarization: -49.07 SS G_CDS: 0.33 Total: -48.74 kcal
Atomic # 8 Polarization: -24.64 SS G_CDS: 0.17 Total: -24.46 kcal
Atomic # 9 Polarization: -8.05 SS G_CDS: 0.14 Total: -7.91 kcal
Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal
Total LS contribution 4.89 Total: 4.89 kcal
Total: -31.61 -4.42 -36.03 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000804821191.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -184.752 kcal
(2) G-P(sol) polarization free energy of solvation -31.612 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.364 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.422 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) -220.786 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds