Wall clock time and date at job start Tue Mar 31 2020 18:21:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31410 * 1
3 3 Si 1.86800 * 119.99531 * 2 1
4 4 H 1.48504 * 109.46848 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47425 * 299.99869 * 3 2 1
6 6 H 1.48495 * 109.47478 * 60.00000 * 3 2 1
7 7 C 1.38946 * 120.00424 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00368 * 179.97438 * 7 2 1
9 9 N 1.37104 * 119.99669 * 359.97438 * 7 2 1
10 10 C 1.34781 * 119.99762 * 179.97438 * 9 7 2
11 11 O 1.21298 * 119.99845 * 0.02562 * 10 9 7
12 12 C 1.50695 * 119.99913 * 180.02562 * 10 9 7
13 13 N 1.46495 * 109.47207 * 180.02562 * 12 10 9
14 14 C 1.34775 * 120.00355 * 180.02562 * 13 12 10
15 15 O 1.21279 * 119.99545 * 359.97438 * 14 13 12
16 16 C 1.50702 * 120.00094 * 179.97438 * 14 13 12
17 17 F 1.39902 * 109.47039 * 85.36623 * 16 14 13
18 18 F 1.39895 * 109.47239 * 325.36516 * 16 14 13
19 19 C 1.50702 * 109.46904 * 205.36162 * 16 14 13
20 20 C 1.38417 * 120.02424 * 247.64514 * 19 16 14
21 21 F 1.35104 * 120.01561 * 359.70982 * 20 19 16
22 22 C 1.38471 * 119.97336 * 179.97438 * 20 19 16
23 23 C 1.38209 * 120.02917 * 0.02562 * 22 20 19
24 24 C 1.38205 * 120.04676 * 359.97438 * 23 22 20
25 25 C 1.38414 * 120.02502 * 67.62576 * 19 16 14
26 26 F 1.35103 * 120.01570 * 0.02562 * 25 19 16
27 27 H 0.97005 * 120.00643 * 0.02562 * 1 2 3
28 28 H 0.96993 * 119.99970 * 359.97438 * 9 7 2
29 29 H 1.09007 * 109.46868 * 59.99865 * 12 10 9
30 30 H 1.08995 * 109.46845 * 300.00011 * 12 10 9
31 31 H 0.97003 * 120.00174 * 359.97438 * 13 12 10
32 32 H 1.08005 * 119.98853 * 180.02562 * 22 20 19
33 33 H 1.07993 * 119.97977 * 180.02562 * 23 22 20
34 34 H 1.08000 * 119.99146 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 3.7080 1.3465 0.0006
5 1 1.8892 2.3965 -1.2125
6 1 1.8892 2.3965 1.2124
7 6 2.0089 -1.2033 0.0005
8 1 3.0889 -1.2032 0.0001
9 7 1.3234 -2.3906 0.0016
10 6 1.9974 -3.5578 0.0016
11 8 3.2104 -3.5577 0.0011
12 6 1.2440 -4.8629 0.0022
13 7 2.1960 -5.9764 0.0027
14 6 1.7468 -7.2471 0.0027
15 8 0.5545 -7.4687 0.0028
16 6 2.7262 -8.3925 0.0027
17 9 3.1104 -8.6776 1.3173
18 9 3.8540 -8.0416 -0.7470
19 6 2.0768 -9.6086 -0.6059
20 6 1.8012 -10.7135 0.1811
21 9 2.1197 -10.7044 1.4940
22 6 1.2040 -11.8301 -0.3790
23 6 0.8835 -11.8421 -1.7234
24 6 1.1582 -10.7395 -2.5101
25 6 1.7551 -9.6215 -1.9520
26 9 2.0236 -8.5438 -2.7214
27 1 -0.4851 0.8400 -0.0004
28 1 0.3535 -2.3906 0.0024
29 1 0.6169 -4.9208 -0.8876
30 1 0.6177 -4.9204 0.8924
31 1 3.1497 -5.7991 0.0022
32 1 0.9885 -12.6922 0.2349
33 1 0.4174 -12.7133 -2.1593
34 1 0.9078 -10.7499 -3.5606
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000804821191.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:21:48
Heat of formation + Delta-G solvation = -242.879386 kcal
Electronic energy + Delta-G solvation = -28580.935905 eV
Core-core repulsion = 23592.392807 eV
Total energy + Delta-G solvation = -4988.543098 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 334.073 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-50.87052 -50.32409 -50.01185 -48.61204 -41.31193 -40.19067 -39.74438 -36.43443
-35.63931 -33.53424 -33.42228 -31.47110 -30.24235 -28.09314 -26.40593 -24.17895
-23.92017 -22.15048 -21.56759 -20.35572 -19.88725 -19.63243 -19.36393 -18.71561
-17.94565 -17.73143 -17.22426 -17.01634 -16.85011 -16.79355 -16.77048 -16.51747
-16.16926 -16.11801 -15.78373 -15.55830 -15.48146 -15.20175 -14.91256 -14.73312
-14.16356 -14.09556 -13.88312 -13.76042 -13.59014 -13.17194 -13.04636 -12.94740
-12.61930 -12.48512 -12.13160 -11.62499 -11.54605 -10.66681 -10.62034 -10.39368
-10.14408 -9.91316 -8.54987 -6.05413 -0.44462 -0.18223 0.69416 1.14360
1.32311 1.42148 1.56095 1.83195 2.05330 2.22064 2.24362 2.39433
2.64192 2.91727 2.97395 3.11807 3.16248 3.23130 3.68926 3.78116
4.08343 4.08959 4.25790 4.26650 4.46936 4.53751 4.77680 4.83454
4.93028 5.06394 5.35361 5.57583 5.83277 5.88280 6.40655 6.44129
6.99192 7.36954 7.87796 8.61931
Molecular weight = 334.07amu
Principal moments of inertia in cm(-1)
A = 0.026320 B = 0.002631 C = 0.002572
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1063.576746 B =10638.286836 C =10884.137702
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C -0.008 4.008
3 Si 0.997 3.003
4 H -0.271 1.271
5 H -0.270 1.270
6 H -0.270 1.270
7 C -0.338 4.338
8 H 0.086 0.914
9 N -0.554 5.554
10 C 0.430 3.570
11 O -0.625 6.625
12 C 0.118 3.882
13 N -0.685 5.685
14 C 0.489 3.511
15 O -0.517 6.517
16 C 0.340 3.660
17 F -0.168 7.168
18 F -0.176 7.176
19 C -0.250 4.250
20 C 0.148 3.852
21 F -0.128 7.128
22 C -0.153 4.153
23 C -0.017 4.017
24 C -0.156 4.156
25 C 0.143 3.857
26 F -0.135 7.135
27 H 0.281 0.719
28 H 0.401 0.599
29 H 0.108 0.892
30 H 0.108 0.892
31 H 0.417 0.583
32 H 0.185 0.815
33 H 0.203 0.797
34 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.346 -26.123 -4.213 26.495
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.209 4.209
3 Si 0.820 3.180
4 H -0.196 1.196
5 H -0.195 1.195
6 H -0.195 1.195
7 C -0.467 4.467
8 H 0.104 0.896
9 N -0.189 5.189
10 C 0.216 3.784
11 O -0.513 6.513
12 C -0.009 4.009
13 N -0.338 5.338
14 C 0.269 3.731
15 O -0.393 6.393
16 C 0.300 3.700
17 F -0.148 7.148
18 F -0.156 7.156
19 C -0.253 4.253
20 C 0.128 3.872
21 F -0.106 7.106
22 C -0.172 4.172
23 C -0.035 4.035
24 C -0.174 4.174
25 C 0.124 3.876
26 F -0.114 7.114
27 H 0.091 0.909
28 H 0.235 0.765
29 H 0.126 0.874
30 H 0.126 0.874
31 H 0.256 0.744
32 H 0.202 0.798
33 H 0.220 0.780
34 H 0.198 0.802
Dipole moment (debyes) X Y Z Total
from point charges -1.488 -26.005 -4.165 26.378
hybrid contribution 0.824 1.717 0.447 1.956
sum -0.663 -24.288 -3.718 24.580
Atomic orbital electron populations
1.69673 1.06955 1.29721 1.48943 1.26123 0.96553 1.02641 0.95586
0.84813 0.78086 0.76678 0.78416 1.19574 1.19469 1.19522 1.19772
0.92975 0.83449 1.50538 0.89645 1.41800 1.09652 1.04441 1.62991
1.20266 0.88077 0.85828 0.84180 1.90504 1.15220 1.87397 1.58166
1.21024 0.91213 0.83140 1.05509 1.45677 1.12515 1.04243 1.71364
1.20605 0.89546 0.84132 0.78827 1.90742 1.15291 1.84115 1.49165
1.19370 0.82120 0.92588 0.75959 1.93134 1.91754 1.94199 1.35747
1.93119 1.53575 1.92900 1.76053 1.19952 1.13380 0.96104 0.95870
1.17437 0.97684 0.94223 0.77868 1.91579 1.90263 1.96728 1.32058
1.21722 1.00238 0.97430 0.97769 1.21656 0.92437 0.98228 0.91155
1.21701 1.00472 0.91294 1.03950 1.17496 0.98045 0.85768 0.86319
1.91564 1.91482 1.53935 1.74393 0.90928 0.76485 0.87389 0.87371
0.74368 0.79770 0.77990 0.80220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -48.08 13.05 21.66 0.28 -47.79 16
2 C -0.01 -0.41 5.50 84.93 0.47 0.05 16
3 Si 1.00 41.76 29.55 68.60 2.03 43.79 16
4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16
6 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16
7 C -0.34 -18.67 9.68 84.04 0.81 -17.86 16
8 H 0.09 5.01 7.16 -2.91 -0.02 4.98 16
9 N -0.55 -27.76 5.29 -306.98 -1.62 -29.39 16
10 C 0.43 20.10 7.85 87.65 0.69 20.79 16
11 O -0.62 -33.24 15.24 -3.08 -0.05 -33.28 16
12 C 0.12 4.35 6.15 85.63 0.53 4.87 16
13 N -0.68 -24.79 5.46 -466.81 -2.55 -27.33 16
14 C 0.49 17.00 6.71 87.66 0.59 17.59 16
15 O -0.52 -19.24 16.24 -3.03 -0.05 -19.29 16
16 C 0.34 10.65 2.03 29.10 0.06 10.71 16
17 F -0.17 -5.33 14.54 44.97 0.65 -4.67 16
18 F -0.18 -5.55 15.82 44.97 0.71 -4.84 16
19 C -0.25 -6.57 4.44 -19.78 -0.09 -6.66 16
20 C 0.15 3.18 7.21 22.37 0.16 3.34 16
21 F -0.13 -3.17 14.84 44.97 0.67 -2.50 16
22 C -0.15 -1.74 10.02 22.32 0.22 -1.51 16
23 C -0.02 -0.12 10.04 22.25 0.22 0.10 16
24 C -0.16 -1.97 10.03 22.32 0.22 -1.75 16
25 C 0.14 3.29 6.95 22.37 0.16 3.45 16
26 F -0.14 -3.73 16.00 44.97 0.72 -3.01 16
27 H 0.28 13.78 8.31 -92.70 -0.77 13.01 16
28 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16
29 H 0.11 3.67 8.14 -2.38 -0.02 3.65 16
30 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16
31 H 0.42 15.58 6.98 -92.71 -0.65 14.93 16
32 H 0.19 0.84 8.06 -2.91 -0.02 0.81 16
33 H 0.20 -0.58 8.06 -2.91 -0.02 -0.60 16
34 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16
Total: -1.00 -70.95 324.78 4.68 -66.28
By element:
Atomic # 1 Polarization: 29.08 SS G_CDS: -0.16 Total: 28.92 kcal
Atomic # 6 Polarization: 29.09 SS G_CDS: 4.04 Total: 33.14 kcal
Atomic # 7 Polarization: -100.63 SS G_CDS: -3.89 Total: -104.52 kcal
Atomic # 8 Polarization: -52.48 SS G_CDS: -0.10 Total: -52.58 kcal
Atomic # 9 Polarization: -17.78 SS G_CDS: 2.75 Total: -15.03 kcal
Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal
Total: -70.95 4.68 -66.28 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000804821191.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -176.604 kcal
(2) G-P(sol) polarization free energy of solvation -70.955 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.276 kcal
(6) G-S(sol) free energy of system = (1) + (5) -242.879 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds