Wall clock time and date at job start Tue Mar 31 2020 19:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99727 * 2 1 4 4 H 1.48507 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47388 * 300.00005 * 3 2 1 6 6 H 1.48502 * 109.46831 * 60.00362 * 3 2 1 7 7 C 1.38696 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00383 * 180.02562 * 7 2 1 9 9 O 1.34813 * 119.99881 * 359.97438 * 7 2 1 10 10 C 1.35526 * 117.00333 * 174.93689 * 9 7 2 11 11 C 1.38834 * 120.15695 * 5.59555 * 10 9 7 12 12 C 1.38023 * 120.06654 * 179.97438 * 11 10 9 13 13 C 1.38573 * 120.40656 * 0.02562 * 12 11 10 14 14 C 1.37829 * 120.32162 * 0.02562 * 13 12 11 15 15 C 1.39673 * 119.91662 * 359.69830 * 14 13 12 16 16 C 1.47536 * 120.19308 * 180.30027 * 15 14 13 17 17 O 1.21592 * 119.99392 * 180.27503 * 16 15 14 18 18 N 1.34773 * 120.00250 * 0.27711 * 16 15 14 19 19 C 1.46496 * 119.99950 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47208 * 179.97438 * 19 18 16 21 21 C 1.50700 * 109.47358 * 179.97438 * 20 19 18 22 22 C 1.33371 * 122.72236 * 124.73626 * 21 20 19 23 23 S 1.76175 * 108.05792 * 179.97438 * 22 21 20 24 24 C 1.70967 * 90.34043 * 0.27108 * 23 22 21 25 25 O 1.35548 * 124.94102 * 179.83844 * 24 23 22 26 26 N 1.29505 * 110.12002 * 359.84399 * 24 23 22 27 27 H 0.97001 * 120.00147 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.96487 * 359.95878 * 11 10 9 29 29 H 1.08006 * 119.79768 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.83910 * 179.97438 * 13 12 11 31 31 H 1.07997 * 120.03840 * 179.97438 * 14 13 12 32 32 H 0.96999 * 119.99862 * 359.97438 * 18 16 15 33 33 H 1.08997 * 109.47319 * 299.99446 * 19 18 16 34 34 H 1.09006 * 109.47393 * 59.99671 * 19 18 16 35 35 H 1.08998 * 109.47390 * 300.00049 * 20 19 18 36 36 H 1.09006 * 109.46863 * 59.99774 * 20 19 18 37 37 H 1.08003 * 125.96908 * 0.02562 * 22 21 20 38 38 H 0.96706 * 114.00102 * 270.00818 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0088 -1.2011 -0.0005 8 1 3.0888 -1.2011 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0688 -3.5029 -0.1076 11 6 3.4556 -3.4400 -0.0943 12 6 4.2014 -4.5964 -0.2030 13 6 3.5746 -5.8261 -0.3265 14 6 2.1988 -5.9074 -0.3426 15 6 1.4310 -4.7463 -0.2278 16 6 -0.0421 -4.8269 -0.2377 17 8 -0.7070 -3.8134 -0.1425 18 7 -0.6508 -6.0239 -0.3522 19 6 -2.1135 -6.1039 -0.3627 20 6 -2.5434 -7.5656 -0.5026 21 6 -4.0482 -7.6479 -0.5127 22 6 -4.7315 -8.2354 -1.4959 23 16 -6.4477 -8.1113 -1.1180 24 6 -6.0797 -7.2722 0.3254 25 8 -6.9967 -6.8135 1.2121 26 7 -4.7975 -7.1386 0.4484 27 1 -0.4850 0.8400 -0.0004 28 1 3.9514 -2.4853 0.0010 29 1 5.2800 -4.5424 -0.1917 30 1 4.1671 -6.7250 -0.4113 31 1 1.7151 -6.8681 -0.4395 32 1 -0.1203 -6.8324 -0.4285 33 1 -2.5063 -5.6969 0.5691 34 1 -2.5029 -5.5290 -1.2029 35 1 -2.1507 -7.9723 -1.4345 36 1 -2.1540 -8.1408 0.3375 37 1 -4.3068 -8.7057 -2.3705 38 1 -7.3009 -5.9132 1.0330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807372847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:21 Heat of formation + Delta-G solvation = -19.281770 kcal Electronic energy + Delta-G solvation = -24815.116917 eV Core-core repulsion = 20944.339655 eV Total energy + Delta-G solvation = -3870.777261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.40997 -39.53219 -38.13323 -37.68615 -36.31436 -34.72113 -32.32977 -31.85085 -30.41946 -28.92230 -28.66069 -25.44370 -25.01347 -23.65202 -22.42062 -21.25473 -20.44076 -19.84671 -19.36425 -18.03080 -17.71432 -17.32410 -16.29702 -16.10295 -15.46722 -15.08286 -14.71939 -14.61871 -14.33621 -14.19771 -14.01963 -13.88298 -13.68650 -13.48744 -12.93603 -12.64167 -12.47234 -12.11315 -11.87830 -11.74981 -11.69541 -11.38099 -11.16972 -11.10055 -10.89555 -10.75587 -10.43196 -9.88786 -9.74152 -9.54785 -9.03130 -8.87015 -8.80804 -8.51742 -8.24689 -7.29017 -6.42704 -4.02635 0.29597 0.80590 1.34869 1.74024 2.33571 2.35729 3.12822 3.13485 3.19309 3.29545 3.71698 3.78972 3.94811 4.49780 4.66663 4.82443 4.89196 5.04503 5.08930 5.19595 5.30949 5.34519 5.49172 5.56088 5.73744 5.75243 6.01504 6.07481 6.13770 6.26221 6.58085 6.71075 6.78043 6.93036 6.97728 7.07911 7.25720 7.31149 7.38563 7.71272 7.93892 8.15662 8.96972 9.14070 9.69836 10.71178 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.002622 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.417609 B =10677.740023 C =12518.427670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.403 4.403 8 H 0.094 0.906 9 O -0.124 6.124 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.051 4.051 13 C -0.231 4.231 14 C -0.038 4.038 15 C -0.226 4.226 16 C 0.554 3.446 17 O -0.500 6.500 18 N -0.745 5.745 19 C 0.133 3.867 20 C -0.056 4.056 21 C 0.094 3.906 22 C -0.251 4.251 23 S 0.117 5.883 24 C 0.231 3.769 25 O -0.438 6.438 26 N -0.477 5.477 27 H 0.270 0.730 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.391 0.609 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.184 0.816 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.638 -17.027 -3.743 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.479 4.479 8 H 0.112 0.888 9 O -0.022 6.022 10 C 0.129 3.871 11 C -0.257 4.257 12 C -0.070 4.070 13 C -0.250 4.250 14 C -0.057 4.057 15 C -0.231 4.231 16 C 0.343 3.657 17 O -0.374 6.374 18 N -0.401 5.401 19 C 0.008 3.992 20 C -0.096 4.096 21 C -0.038 4.038 22 C -0.390 4.390 23 S 0.366 5.634 24 C -0.087 4.087 25 O -0.246 6.246 26 N -0.202 5.202 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.226 0.774 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.201 0.799 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.393 -16.534 -3.325 19.304 hybrid contribution 1.529 0.872 -0.107 1.763 sum -7.864 -15.662 -3.432 17.858 Atomic orbital electron populations 1.70142 1.05969 1.27571 1.42688 1.25388 0.95796 0.98957 0.96217 0.85664 0.79189 0.80304 0.78337 1.18972 1.20027 1.20028 1.21545 0.91910 0.81129 1.53334 0.88823 1.84179 1.33542 1.10985 1.73519 1.19287 0.89857 0.87426 0.90500 1.21158 0.93385 0.99341 1.11839 1.20894 0.98621 0.92329 0.95146 1.20459 0.94072 0.97099 1.13405 1.20758 0.93828 0.95509 0.95634 1.18855 0.91922 0.92158 1.20166 1.18221 0.87800 0.82796 0.76866 1.90954 1.65816 1.33888 1.46719 1.45857 1.06262 1.09230 1.78799 1.21046 0.80910 0.94169 1.03059 1.20428 0.87069 0.98232 1.03913 1.19710 0.97161 0.97432 0.89518 1.26741 0.94516 1.11450 1.06264 1.84193 1.07160 1.54624 1.17443 1.24401 0.88629 1.02284 0.93384 1.84848 1.54146 1.36479 1.49079 1.66325 1.03489 1.21995 1.28426 0.91940 0.85087 0.87214 0.87290 0.87019 0.77426 0.90816 0.91916 0.89248 0.89219 0.79903 0.73322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.34 13.67 55.48 0.76 -24.59 16 2 C 0.04 1.24 5.49 -17.52 -0.10 1.14 16 3 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.40 -11.52 9.49 30.90 0.29 -11.23 16 8 H 0.09 2.43 5.21 -52.48 -0.27 2.15 16 9 O -0.12 -3.71 7.84 -21.07 -0.17 -3.87 16 10 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 11 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 13 C -0.23 -3.77 10.03 -39.61 -0.40 -4.17 16 14 C -0.04 -0.65 9.54 -39.20 -0.37 -1.03 16 15 C -0.23 -4.94 5.89 -104.81 -0.62 -5.56 16 16 C 0.55 12.37 7.76 -12.47 -0.10 12.27 16 17 O -0.50 -14.02 15.17 -16.57 -0.25 -14.27 16 18 N -0.75 -12.04 5.51 -61.35 -0.34 -12.38 16 19 C 0.13 1.99 5.58 -4.04 -0.02 1.96 16 20 C -0.06 -0.58 5.82 -27.88 -0.16 -0.74 16 21 C 0.09 1.05 6.07 -84.18 -0.51 0.54 16 22 C -0.25 -2.18 11.05 29.03 0.32 -1.86 16 23 S 0.12 0.97 23.22 -107.50 -2.50 -1.52 16 24 C 0.23 2.53 8.64 51.78 0.45 2.98 16 25 O -0.44 -4.09 13.64 -18.34 -0.25 -4.34 16 26 N -0.48 -6.31 10.39 -12.15 -0.13 -6.44 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 29 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.11 1.43 6.40 -52.49 -0.34 1.09 16 32 H 0.39 4.83 6.50 -40.82 -0.27 4.56 16 33 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.18 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.41 1.83 9.06 45.56 0.41 2.24 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -38.29 349.18 -7.70 -45.99 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -2.84 Total: 8.52 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.23 Total: -8.01 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.29 Total: -43.40 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.67 Total: -22.49 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.50 Total: -1.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.29 -7.70 -45.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807372847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.707 kcal (2) G-P(sol) polarization free energy of solvation -38.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds