Wall clock time and date at job start Tue Mar 31 2020 19:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99727 * 2 1 4 4 H 1.48507 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47388 * 300.00005 * 3 2 1 6 6 H 1.48502 * 109.46831 * 60.00362 * 3 2 1 7 7 C 1.38696 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00383 * 180.02562 * 7 2 1 9 9 O 1.34813 * 119.99881 * 359.97438 * 7 2 1 10 10 C 1.35526 * 117.00333 * 174.93689 * 9 7 2 11 11 C 1.38834 * 120.15695 * 5.59555 * 10 9 7 12 12 C 1.38023 * 120.06654 * 179.97438 * 11 10 9 13 13 C 1.38573 * 120.40656 * 0.02562 * 12 11 10 14 14 C 1.37829 * 120.32162 * 0.02562 * 13 12 11 15 15 C 1.39673 * 119.91662 * 359.69830 * 14 13 12 16 16 C 1.47536 * 120.19308 * 180.30027 * 15 14 13 17 17 O 1.21592 * 119.99392 * 180.27503 * 16 15 14 18 18 N 1.34773 * 120.00250 * 0.27711 * 16 15 14 19 19 C 1.46496 * 119.99950 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47208 * 179.97438 * 19 18 16 21 21 C 1.50700 * 109.47358 * 179.97438 * 20 19 18 22 22 C 1.33371 * 122.72236 * 124.73626 * 21 20 19 23 23 S 1.76175 * 108.05792 * 179.97438 * 22 21 20 24 24 C 1.70967 * 90.34043 * 0.27108 * 23 22 21 25 25 O 1.35548 * 124.94102 * 179.83844 * 24 23 22 26 26 N 1.29505 * 110.12002 * 359.84399 * 24 23 22 27 27 H 0.97001 * 120.00147 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.96487 * 359.95878 * 11 10 9 29 29 H 1.08006 * 119.79768 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.83910 * 179.97438 * 13 12 11 31 31 H 1.07997 * 120.03840 * 179.97438 * 14 13 12 32 32 H 0.96999 * 119.99862 * 359.97438 * 18 16 15 33 33 H 1.08997 * 109.47319 * 299.99446 * 19 18 16 34 34 H 1.09006 * 109.47393 * 59.99671 * 19 18 16 35 35 H 1.08998 * 109.47390 * 300.00049 * 20 19 18 36 36 H 1.09006 * 109.46863 * 59.99774 * 20 19 18 37 37 H 1.08003 * 125.96908 * 0.02562 * 22 21 20 38 38 H 0.96706 * 114.00102 * 270.00818 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0088 -1.2011 -0.0005 8 1 3.0888 -1.2011 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0688 -3.5029 -0.1076 11 6 3.4556 -3.4400 -0.0943 12 6 4.2014 -4.5964 -0.2030 13 6 3.5746 -5.8261 -0.3265 14 6 2.1988 -5.9074 -0.3426 15 6 1.4310 -4.7463 -0.2278 16 6 -0.0421 -4.8269 -0.2377 17 8 -0.7070 -3.8134 -0.1425 18 7 -0.6508 -6.0239 -0.3522 19 6 -2.1135 -6.1039 -0.3627 20 6 -2.5434 -7.5656 -0.5026 21 6 -4.0482 -7.6479 -0.5127 22 6 -4.7315 -8.2354 -1.4959 23 16 -6.4477 -8.1113 -1.1180 24 6 -6.0797 -7.2722 0.3254 25 8 -6.9967 -6.8135 1.2121 26 7 -4.7975 -7.1386 0.4484 27 1 -0.4850 0.8400 -0.0004 28 1 3.9514 -2.4853 0.0010 29 1 5.2800 -4.5424 -0.1917 30 1 4.1671 -6.7250 -0.4113 31 1 1.7151 -6.8681 -0.4395 32 1 -0.1203 -6.8324 -0.4285 33 1 -2.5063 -5.6969 0.5691 34 1 -2.5029 -5.5290 -1.2029 35 1 -2.1507 -7.9723 -1.4345 36 1 -2.1540 -8.1408 0.3375 37 1 -4.3068 -8.7057 -2.3705 38 1 -7.3009 -5.9132 1.0330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807372847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:20 Heat of formation + Delta-G solvation = -52.198472 kcal Electronic energy + Delta-G solvation = -24816.544292 eV Core-core repulsion = 20944.339655 eV Total energy + Delta-G solvation = -3872.204637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35036 -41.08072 -39.79625 -38.49208 -38.00977 -36.17773 -34.32639 -33.11469 -31.75577 -30.55428 -29.66849 -27.38908 -26.02744 -24.84959 -23.83275 -22.86897 -21.64320 -20.99851 -20.16546 -19.84156 -19.22529 -18.29761 -17.78377 -17.28730 -16.76746 -16.46274 -16.31548 -15.94876 -15.73732 -15.56453 -15.38234 -15.28420 -14.89244 -14.74350 -14.37206 -14.25426 -14.05925 -13.54558 -13.04213 -12.99970 -12.77047 -12.67806 -12.63473 -12.53482 -12.30719 -12.16035 -12.09298 -11.42103 -10.84497 -10.67922 -10.61538 -10.46849 -10.11243 -9.76480 -9.72763 -9.02191 -8.44513 -6.15601 -0.41955 0.11138 0.14175 0.63829 0.74602 1.31808 1.42766 1.51934 1.55919 2.11089 2.15668 2.30170 2.64293 2.88422 3.24043 3.48398 3.73002 3.96133 3.98209 4.10978 4.13123 4.26282 4.31323 4.43538 4.52815 4.55801 4.66250 4.89825 4.99019 5.00249 5.07627 5.09988 5.17046 5.50145 5.52484 5.62972 5.71621 5.96647 6.19328 6.22761 6.66286 6.73080 6.94854 7.50490 7.81544 8.76406 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.002622 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.417609 B =10677.740023 C =12518.427670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.024 4.024 3 Si 1.023 2.977 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.426 4.426 8 H 0.107 0.893 9 O -0.191 6.191 10 C 0.147 3.853 11 C -0.259 4.259 12 C -0.040 4.040 13 C -0.200 4.200 14 C -0.028 4.028 15 C -0.244 4.244 16 C 0.546 3.454 17 O -0.572 6.572 18 N -0.715 5.715 19 C 0.136 3.864 20 C -0.040 4.040 21 C 0.061 3.939 22 C -0.237 4.237 23 S 0.175 5.825 24 C 0.204 3.796 25 O -0.451 6.451 26 N -0.525 5.525 27 H 0.270 0.730 28 H 0.122 0.878 29 H 0.154 0.846 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.415 0.585 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.219 0.781 38 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 -21.401 -5.228 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.223 4.223 3 Si 0.841 3.159 4 H -0.168 1.168 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.502 4.502 8 H 0.125 0.875 9 O -0.094 6.094 10 C 0.092 3.908 11 C -0.278 4.278 12 C -0.059 4.059 13 C -0.218 4.218 14 C -0.046 4.046 15 C -0.249 4.249 16 C 0.336 3.664 17 O -0.452 6.452 18 N -0.371 5.371 19 C 0.012 3.988 20 C -0.080 4.080 21 C -0.070 4.070 22 C -0.376 4.376 23 S 0.423 5.577 24 C -0.112 4.112 25 O -0.261 6.261 26 N -0.252 5.252 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.171 0.829 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.254 0.746 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.146 0.854 36 H 0.119 0.881 37 H 0.235 0.765 38 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -6.705 -21.036 -4.820 22.598 hybrid contribution 0.799 1.720 0.296 1.919 sum -5.906 -19.316 -4.524 20.699 Atomic orbital electron populations 1.70340 1.08412 1.28455 1.47056 1.26781 0.96742 1.03181 0.95588 0.84492 0.78442 0.74428 0.78493 1.16769 1.19329 1.19444 1.22084 0.92694 0.81829 1.53629 0.87547 1.84186 1.35226 1.12219 1.77721 1.20128 0.91718 0.87610 0.91358 1.21293 0.92273 1.00998 1.13218 1.21445 1.00705 0.91315 0.92389 1.21199 0.93980 0.98401 1.08217 1.21346 0.94412 0.95634 0.93228 1.19299 0.92186 0.92985 1.20445 1.18603 0.88350 0.83426 0.76057 1.90934 1.67259 1.36801 1.50168 1.45545 1.07066 1.08228 1.76215 1.21019 0.79662 0.97696 1.00423 1.20373 0.87093 0.94219 1.06348 1.19841 0.97453 0.99325 0.90362 1.27205 0.94830 1.09505 1.06083 1.83975 1.06343 1.52560 1.14781 1.24676 0.88513 1.03279 0.94761 1.84792 1.53818 1.37906 1.49610 1.66288 1.04985 1.23580 1.30392 0.92094 0.86037 0.82877 0.81627 0.81744 0.74607 0.94429 0.93868 0.85420 0.88143 0.76463 0.71471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.38 13.67 21.62 0.30 -60.08 16 2 C -0.02 -1.45 5.49 84.85 0.47 -0.98 16 3 Si 1.02 44.94 29.55 68.60 2.03 46.96 16 4 H -0.24 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.43 -26.23 9.49 67.93 0.64 -25.58 16 8 H 0.11 5.87 5.21 -2.91 -0.02 5.85 16 9 O -0.19 -12.39 7.84 0.78 0.01 -12.38 16 10 C 0.15 7.68 6.66 22.90 0.15 7.84 16 11 C -0.26 -11.14 9.16 22.36 0.20 -10.94 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 13 C -0.20 -5.19 10.03 22.25 0.22 -4.96 16 14 C -0.03 -0.82 9.54 22.52 0.21 -0.60 16 15 C -0.24 -10.68 5.89 -19.99 -0.12 -10.80 16 16 C 0.55 25.36 7.76 86.70 0.67 26.03 16 17 O -0.57 -35.05 15.17 16.89 0.26 -34.80 16 18 N -0.71 -22.65 5.51 -466.27 -2.57 -25.21 16 19 C 0.14 4.19 5.58 86.38 0.48 4.68 16 20 C -0.04 -0.75 5.82 29.85 0.17 -0.58 16 21 C 0.06 1.30 6.07 41.42 0.25 1.56 16 22 C -0.24 -3.46 11.05 66.72 0.74 -2.73 16 23 S 0.17 2.56 23.22 -56.49 -1.31 1.25 16 24 C 0.20 4.51 8.64 130.59 1.13 5.64 16 25 O -0.45 -8.75 13.64 -88.54 -1.21 -9.96 16 26 N -0.53 -14.22 10.39 -306.65 -3.19 -17.40 16 27 H 0.27 16.42 8.31 -92.71 -0.77 15.65 16 28 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 29 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.17 3.03 6.40 -2.91 -0.02 3.02 16 32 H 0.42 8.76 6.50 -92.71 -0.60 8.15 16 33 H 0.04 1.43 8.07 -2.39 -0.02 1.41 16 34 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.13 1.38 8.03 -2.39 -0.02 1.36 16 36 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.22 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.42 4.27 9.06 -74.05 -0.67 3.60 16 Total: -1.00 -98.97 349.18 -0.35 -99.32 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -0.12 Total: 24.78 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 5.46 Total: -12.47 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -5.46 Total: -102.70 kcal Atomic # 8 Polarization: -56.19 SS G_CDS: -0.95 Total: -57.14 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.31 Total: 1.25 kcal Total: -98.97 -0.35 -99.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807372847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.119 kcal (2) G-P(sol) polarization free energy of solvation -98.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds