Wall clock time and date at job start Tue Mar 31 2020 19:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47424 * 300.00159 * 3 2 1 6 6 H 1.48497 * 109.47254 * 60.00694 * 3 2 1 7 7 C 1.37885 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00040 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47091 * 65.00251 * 12 11 10 14 14 C 1.34895 * 117.00197 * 179.97438 * 13 12 11 15 15 O 1.21638 * 119.99902 * 0.02562 * 14 13 12 16 16 C 1.46394 * 120.00307 * 180.02562 * 14 13 12 17 17 C 1.36986 * 126.12866 * 180.02562 * 16 14 13 18 18 N 1.30582 * 114.02334 * 179.97438 * 17 16 14 19 19 C 1.30365 * 117.31658 * 359.97438 * 18 17 16 20 20 C 1.47787 * 124.75079 * 180.02562 * 19 18 17 21 21 C 1.40027 * 120.56020 * 359.97406 * 20 19 18 22 22 C 1.38350 * 118.29057 * 179.97438 * 21 20 19 23 23 C 1.38357 * 119.30796 * 0.02562 * 22 21 20 24 24 N 1.31916 * 121.08182 * 359.97438 * 23 22 21 25 25 C 1.31698 * 121.88074 * 359.72612 * 24 23 22 26 26 S 1.70926 * 110.50405 * 359.72490 * 19 18 17 27 27 H 0.96998 * 120.00311 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47126 * 60.00117 * 9 7 2 29 29 H 1.09005 * 109.47067 * 300.00406 * 9 7 2 30 30 H 1.09003 * 109.46726 * 60.00166 * 11 10 9 31 31 H 1.08993 * 109.47089 * 299.99930 * 11 10 9 32 32 H 1.09001 * 109.47142 * 305.00214 * 12 11 10 33 33 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 34 34 H 1.08000 * 122.98580 * 359.97438 * 17 16 14 35 35 H 1.07999 * 120.85413 * 0.02562 * 21 20 19 36 36 H 1.07996 * 120.34830 * 180.02562 * 22 21 20 37 37 H 1.07997 * 119.45834 * 179.97438 * 23 22 21 38 38 H 1.08005 * 119.72283 * 180.26044 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 8 3.4002 -5.8885 1.2396 14 6 4.3993 -6.7806 1.3994 15 8 4.6353 -7.5926 0.5250 16 6 5.1998 -6.7715 2.6251 17 6 6.2387 -7.6150 2.9176 18 7 6.7893 -7.3967 4.0813 19 6 6.2978 -6.4292 4.8036 20 6 6.7932 -6.0406 6.1407 21 6 7.8653 -6.7230 6.7287 22 6 8.2912 -6.3197 7.9817 23 6 7.6503 -5.2655 8.6080 24 7 6.6425 -4.6409 8.0298 25 6 6.2044 -4.9837 6.8361 26 16 5.0054 -5.6674 3.9844 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 0.9446 -4.9827 -0.8897 31 1 0.9452 -4.9822 0.8902 32 1 3.3210 -5.7957 -0.8430 33 1 2.1820 -6.9376 -0.0898 34 1 6.5727 -8.3916 2.2454 35 1 8.3478 -7.5426 6.2169 36 1 9.1153 -6.8224 8.4658 37 1 7.9805 -4.9489 9.5863 38 1 5.3792 -4.4454 6.3936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815223642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:09 Heat of formation + Delta-G solvation = -49.481489 kcal Electronic energy + Delta-G solvation = -24073.223846 eV Core-core repulsion = 20201.137026 eV Total energy + Delta-G solvation = -3872.086820 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80985 -40.41095 -39.51134 -37.11528 -36.08302 -33.63853 -32.80585 -32.43613 -30.76350 -29.70410 -27.07480 -26.62744 -24.41213 -23.63286 -23.00697 -22.38972 -21.71816 -19.82733 -19.29234 -17.59965 -17.28553 -17.00644 -16.65115 -16.41459 -16.28258 -15.76014 -15.51913 -15.07105 -14.80021 -14.55970 -14.29777 -14.18026 -14.07534 -13.64968 -13.54288 -13.00360 -12.78147 -12.52160 -12.05821 -11.79324 -11.50148 -11.02356 -10.92473 -10.83128 -10.75116 -10.70201 -10.48953 -10.19315 -10.07789 -10.07624 -10.01440 -9.80600 -9.14882 -8.92267 -8.82340 -8.25392 -6.14761 -4.16472 -0.58443 0.67890 0.74638 0.82752 1.24705 2.08685 2.53424 2.73448 3.27423 3.34118 3.35602 3.40203 3.40527 3.98004 4.29440 4.29742 4.38380 4.45532 4.58937 4.64373 4.69794 4.86055 4.98415 5.13155 5.17101 5.22084 5.38293 5.54375 5.63303 5.69842 5.79211 5.86074 5.99084 6.09468 6.36457 7.01258 7.15153 7.35911 7.42100 7.59688 7.75439 8.09013 8.47856 8.96209 9.48524 10.96802 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.002740 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.380151 B =10215.025145 C =12532.818642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.077 3.923 13 O -0.337 6.337 14 C 0.545 3.455 15 O -0.500 6.500 16 C -0.293 4.293 17 C 0.137 3.863 18 N -0.475 5.475 19 C 0.071 3.929 20 C -0.086 4.086 21 C -0.025 4.025 22 C -0.174 4.174 23 C 0.114 3.886 24 N -0.477 5.477 25 C 0.129 3.871 26 S 0.281 5.719 27 H 0.264 0.736 28 H 0.007 0.993 29 H 0.008 0.992 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.195 0.805 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.163 0.837 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.558 -16.472 14.625 25.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.003 3.997 13 O -0.253 6.253 14 C 0.388 3.612 15 O -0.391 6.391 16 C -0.416 4.416 17 C -0.025 4.025 18 N -0.190 5.190 19 C -0.198 4.198 20 C -0.091 4.091 21 C -0.054 4.054 22 C -0.194 4.194 23 C -0.044 4.044 24 N -0.185 5.185 25 C -0.032 4.032 26 S 0.543 5.457 27 H 0.073 0.927 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.211 0.789 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.180 0.820 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.941 -15.238 15.234 25.134 hybrid contribution 0.690 -0.653 -1.314 1.621 sum 13.631 -15.891 13.920 25.141 Atomic orbital electron populations 1.69963 1.06106 1.27137 1.50533 1.24949 0.94986 0.99468 0.95084 0.86283 0.80051 0.82529 0.77670 1.19449 1.20830 1.20755 1.21075 0.94121 0.89247 1.50841 0.91468 1.20250 0.88732 0.83464 0.95547 1.87921 1.35346 1.12584 1.95241 1.22337 0.93129 0.85453 1.00767 1.23321 0.93579 0.99146 0.83627 1.86685 1.43011 1.53260 1.42308 1.19252 0.78629 0.78716 0.84577 1.90890 1.68177 1.38104 1.41889 1.25236 1.07524 1.07627 1.01237 1.22449 0.90040 0.97904 0.92112 1.66391 1.29670 1.17393 1.05518 1.25307 0.98985 0.96777 0.98751 1.18920 0.99342 0.99429 0.91426 1.21777 0.92606 0.97225 0.93838 1.22200 1.02143 0.99167 0.95905 1.23040 0.90478 0.91273 0.99567 1.67754 1.12595 1.28362 1.09752 1.22960 0.97562 0.92394 0.90293 1.84384 1.26985 1.28289 1.06032 0.92652 0.97566 0.97459 0.91650 0.93080 0.90102 0.90049 0.78866 0.83370 0.83871 0.82017 0.82208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -15.01 9.43 -34.44 -0.32 -15.33 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.19 5.22 5.69 36.00 0.20 5.43 16 10 O -0.39 -9.27 10.30 -38.79 -0.40 -9.67 16 11 C 0.06 1.07 6.33 37.16 0.24 1.31 16 12 C 0.08 1.17 5.86 37.16 0.22 1.39 16 13 O -0.34 -5.54 10.09 -43.81 -0.44 -5.98 16 14 C 0.55 8.25 7.93 34.01 0.27 8.52 16 15 O -0.50 -8.16 16.67 -19.37 -0.32 -8.48 16 16 C -0.29 -3.77 6.52 -36.76 -0.24 -4.01 16 17 C 0.14 1.55 11.15 -18.54 -0.21 1.34 16 18 N -0.48 -5.35 10.11 -11.99 -0.12 -5.47 16 19 C 0.07 0.75 7.14 -14.27 -0.10 0.65 16 20 C -0.09 -0.80 5.89 -104.83 -0.62 -1.42 16 21 C -0.03 -0.20 9.80 -38.87 -0.38 -0.58 16 22 C -0.17 -1.02 10.10 -39.50 -0.40 -1.42 16 23 C 0.11 0.78 11.17 -17.47 -0.20 0.58 16 24 N -0.48 -4.57 10.35 -12.90 -0.13 -4.71 16 25 C 0.13 1.21 10.74 -17.12 -0.18 1.02 16 26 S 0.28 3.17 21.89 -107.50 -2.35 0.81 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.15 1.02 7.87 -52.49 -0.41 0.61 16 36 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 37 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.16 1.32 7.24 -52.48 -0.38 0.94 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -34.33 361.00 -8.58 -42.91 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: -4.14 Total: -4.69 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.82 Total: -1.00 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.48 Total: -35.99 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.16 Total: -24.14 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.35 Total: 0.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.33 -8.58 -42.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815223642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.568 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds