Wall clock time and date at job start Tue Mar 31 2020 19:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47424 * 300.00159 * 3 2 1 6 6 H 1.48497 * 109.47254 * 60.00694 * 3 2 1 7 7 C 1.37885 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00040 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47091 * 65.00251 * 12 11 10 14 14 C 1.34895 * 117.00197 * 179.97438 * 13 12 11 15 15 O 1.21638 * 119.99902 * 0.02562 * 14 13 12 16 16 C 1.46394 * 120.00307 * 180.02562 * 14 13 12 17 17 C 1.36986 * 126.12866 * 180.02562 * 16 14 13 18 18 N 1.30582 * 114.02334 * 179.97438 * 17 16 14 19 19 C 1.30365 * 117.31658 * 359.97438 * 18 17 16 20 20 C 1.47787 * 124.75079 * 180.02562 * 19 18 17 21 21 C 1.40027 * 120.56020 * 359.97406 * 20 19 18 22 22 C 1.38350 * 118.29057 * 179.97438 * 21 20 19 23 23 C 1.38357 * 119.30796 * 0.02562 * 22 21 20 24 24 N 1.31916 * 121.08182 * 359.97438 * 23 22 21 25 25 C 1.31698 * 121.88074 * 359.72612 * 24 23 22 26 26 S 1.70926 * 110.50405 * 359.72490 * 19 18 17 27 27 H 0.96998 * 120.00311 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47126 * 60.00117 * 9 7 2 29 29 H 1.09005 * 109.47067 * 300.00406 * 9 7 2 30 30 H 1.09003 * 109.46726 * 60.00166 * 11 10 9 31 31 H 1.08993 * 109.47089 * 299.99930 * 11 10 9 32 32 H 1.09001 * 109.47142 * 305.00214 * 12 11 10 33 33 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 34 34 H 1.08000 * 122.98580 * 359.97438 * 17 16 14 35 35 H 1.07999 * 120.85413 * 0.02562 * 21 20 19 36 36 H 1.07996 * 120.34830 * 180.02562 * 22 21 20 37 37 H 1.07997 * 119.45834 * 179.97438 * 23 22 21 38 38 H 1.08005 * 119.72283 * 180.26044 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 8 3.4002 -5.8885 1.2396 14 6 4.3993 -6.7806 1.3994 15 8 4.6353 -7.5926 0.5250 16 6 5.1998 -6.7715 2.6251 17 6 6.2387 -7.6150 2.9176 18 7 6.7893 -7.3967 4.0813 19 6 6.2978 -6.4292 4.8036 20 6 6.7932 -6.0406 6.1407 21 6 7.8653 -6.7230 6.7287 22 6 8.2912 -6.3197 7.9817 23 6 7.6503 -5.2655 8.6080 24 7 6.6425 -4.6409 8.0298 25 6 6.2044 -4.9837 6.8361 26 16 5.0054 -5.6674 3.9844 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 0.9446 -4.9827 -0.8897 31 1 0.9452 -4.9822 0.8902 32 1 3.3210 -5.7957 -0.8430 33 1 2.1820 -6.9376 -0.0898 34 1 6.5727 -8.3916 2.2454 35 1 8.3478 -7.5426 6.2169 36 1 9.1153 -6.8224 8.4658 37 1 7.9805 -4.9489 9.5863 38 1 5.3792 -4.4454 6.3936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815223642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:08 Heat of formation + Delta-G solvation = -71.320442 kcal Electronic energy + Delta-G solvation = -24074.170854 eV Core-core repulsion = 20201.137026 eV Total energy + Delta-G solvation = -3873.033828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.72142 -41.30994 -40.40012 -38.75312 -37.48251 -34.95663 -34.35283 -33.03911 -32.01181 -30.85250 -29.04121 -27.54668 -25.21244 -24.60572 -24.35361 -23.91190 -22.96980 -20.73814 -20.24750 -18.73402 -18.46271 -18.10011 -18.00219 -17.81094 -17.15732 -17.01995 -16.60482 -16.43377 -16.19035 -15.92473 -15.57715 -15.11802 -14.83179 -14.78787 -14.40104 -14.22306 -14.12804 -13.78087 -13.27015 -13.14019 -12.92326 -12.76074 -12.69047 -12.47564 -12.10043 -11.90126 -11.82341 -11.51281 -11.27641 -11.08485 -10.90947 -10.75507 -10.63076 -10.61802 -10.28351 -9.61139 -8.33136 -6.44923 -1.43675 -0.14451 0.00738 0.20155 0.35952 1.11648 1.40236 1.41056 1.41630 1.55751 1.73980 2.33890 2.61010 2.74803 3.01007 3.03946 3.39058 3.52502 3.60177 3.78371 3.87984 3.89975 3.96050 4.06559 4.08407 4.38429 4.44041 4.49136 4.62689 4.65005 4.79332 4.84835 5.04380 5.09570 5.14350 5.18755 5.53899 5.56584 5.94490 6.26179 6.41492 6.49996 6.78847 6.82577 7.26670 8.79209 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.002740 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.380151 B =10215.025145 C =12532.818642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.079 3.921 13 O -0.355 6.355 14 C 0.549 3.451 15 O -0.518 6.518 16 C -0.324 4.324 17 C 0.153 3.847 18 N -0.485 5.485 19 C 0.091 3.909 20 C -0.107 4.107 21 C -0.028 4.028 22 C -0.161 4.161 23 C 0.114 3.886 24 N -0.505 5.505 25 C 0.120 3.880 26 S 0.271 5.729 27 H 0.271 0.729 28 H -0.007 1.007 29 H -0.010 1.010 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.212 0.788 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.193 0.807 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.392 -16.665 16.082 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.024 4.024 12 C 0.006 3.994 13 O -0.271 6.271 14 C 0.393 3.607 15 O -0.410 6.410 16 C -0.447 4.447 17 C -0.009 4.009 18 N -0.200 5.200 19 C -0.178 4.178 20 C -0.113 4.113 21 C -0.057 4.057 22 C -0.181 4.181 23 C -0.043 4.043 24 N -0.213 5.213 25 C -0.041 4.041 26 S 0.534 5.466 27 H 0.080 0.920 28 H 0.011 0.989 29 H 0.008 0.992 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.228 0.772 35 H 0.174 0.826 36 H 0.198 0.802 37 H 0.210 0.790 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.763 -15.449 16.689 27.113 hybrid contribution 0.191 -0.679 -1.596 1.745 sum 14.954 -16.128 15.093 26.675 Atomic orbital electron populations 1.70055 1.07628 1.28622 1.50462 1.25915 0.95961 1.03241 0.93931 0.85175 0.78631 0.77501 0.78356 1.19026 1.19632 1.19523 1.21396 0.94021 0.90925 1.52263 0.92288 1.19873 0.88533 0.84314 0.93952 1.87865 1.35548 1.14198 1.95349 1.22671 0.94389 0.83272 1.02084 1.23330 0.93055 0.99649 0.83319 1.86671 1.43706 1.54061 1.42666 1.19469 0.78176 0.78015 0.85035 1.90865 1.68688 1.38730 1.42704 1.25113 1.08771 1.09495 1.01289 1.22760 0.88847 0.97278 0.92045 1.66480 1.29972 1.17878 1.05639 1.25598 0.97735 0.95624 0.98871 1.18987 1.00729 1.00474 0.91076 1.22020 0.91926 0.97144 0.94616 1.22573 1.02290 0.98339 0.94854 1.23660 0.89287 0.90850 1.00513 1.67779 1.14068 1.29548 1.09950 1.23003 0.97839 0.92603 0.90617 1.84395 1.27760 1.28493 1.05912 0.91986 0.98925 0.99191 0.89601 0.92427 0.90488 0.86725 0.77176 0.82556 0.80221 0.78969 0.82293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.98 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -32.65 9.43 25.60 0.24 -32.40 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.49 16 9 C 0.21 11.55 5.69 71.23 0.41 11.95 16 10 O -0.41 -19.90 10.30 -145.57 -1.50 -21.40 16 11 C 0.05 1.87 6.33 71.98 0.46 2.32 16 12 C 0.08 2.42 5.86 71.98 0.42 2.84 16 13 O -0.35 -11.83 10.09 -55.43 -0.56 -12.39 16 14 C 0.55 16.77 7.93 69.94 0.55 17.32 16 15 O -0.52 -16.88 16.67 19.38 0.32 -16.55 16 16 C -0.32 -8.41 6.52 24.10 0.16 -8.25 16 17 C 0.15 3.38 11.15 84.58 0.94 4.33 16 18 N -0.49 -10.52 10.11 -191.85 -1.94 -12.46 16 19 C 0.09 1.89 7.14 87.44 0.62 2.52 16 20 C -0.11 -1.92 5.89 -20.00 -0.12 -2.04 16 21 C -0.03 -0.37 9.80 22.73 0.22 -0.15 16 22 C -0.16 -1.38 10.10 22.32 0.23 -1.15 16 23 C 0.11 1.26 11.17 84.71 0.95 2.21 16 24 N -0.51 -9.11 10.35 -194.73 -2.01 -11.13 16 25 C 0.12 2.21 10.74 85.03 0.91 3.12 16 26 S 0.27 6.28 21.89 -56.49 -1.24 5.04 16 27 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 28 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 30 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 34 H 0.21 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.16 1.80 7.87 -2.91 -0.02 1.78 16 36 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 38 H 0.16 2.74 7.24 -2.91 -0.02 2.72 16 Total: -1.00 -74.39 361.00 2.94 -71.46 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.10 Total: 2.52 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 6.46 Total: 3.55 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -3.67 Total: -78.55 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -1.73 Total: -50.33 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.24 Total: 5.04 kcal Total: -74.39 2.94 -71.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815223642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.136 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds