Wall clock time and date at job start Tue Mar 31 2020 17:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47438 * 270.00209 * 3 2 1 5 5 H 1.48502 * 109.47127 * 30.00224 * 3 2 1 6 6 H 1.48500 * 109.47017 * 149.99798 * 3 2 1 7 7 C 1.37873 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00414 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47048 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.34709 * 117.00180 * 179.97438 * 11 10 9 13 13 O 1.21470 * 119.99931 * 359.97438 * 12 11 10 14 14 C 1.47717 * 120.00323 * 179.97438 * 12 11 10 15 15 C 1.39648 * 120.14876 * 0.02562 * 14 12 11 16 16 C 1.37929 * 119.84941 * 179.97438 * 15 14 12 17 17 C 1.38386 * 120.14825 * 0.27872 * 16 15 14 18 18 C 1.38345 * 120.30474 * 359.44560 * 17 16 15 19 19 S 1.76199 * 119.92934 * 180.25574 * 18 17 16 20 20 O 1.42097 * 104.27471 * 26.36616 * 19 18 17 21 21 O 1.42099 * 104.27935 * 154.22364 * 19 18 17 22 22 C 1.81400 * 104.45101 * 270.29545 * 19 18 17 23 23 F 1.39897 * 109.46843 * 300.00064 * 22 19 18 24 24 F 1.39908 * 109.47039 * 59.99653 * 22 19 18 25 25 C 1.37975 * 120.14878 * 0.55131 * 18 17 16 26 26 H 0.96997 * 119.99890 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.47375 * 59.99633 * 9 7 2 28 28 H 1.09003 * 109.46791 * 299.99906 * 9 7 2 29 29 H 1.09000 * 109.47301 * 59.99808 * 10 9 7 30 30 H 1.08997 * 109.46896 * 299.99159 * 10 9 7 31 31 H 1.07999 * 120.07600 * 359.97438 * 15 14 12 32 32 H 1.08002 * 119.92294 * 179.97438 * 16 15 14 33 33 H 1.08000 * 119.84887 * 179.71713 * 17 16 15 34 34 H 1.08996 * 109.47382 * 179.97438 * 22 19 18 35 35 H 1.07997 * 120.07576 * 179.75004 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5192 -4.9196 -0.0020 12 6 2.2528 -6.0494 -0.0024 13 8 3.4658 -5.9858 -0.0027 14 6 1.5822 -7.3655 -0.0023 15 6 0.1878 -7.4423 -0.0024 16 6 -0.4319 -8.6745 -0.0029 17 6 0.3249 -9.8331 0.0025 18 6 1.7066 -9.7644 -0.0031 19 16 2.6604 -11.2459 -0.0029 20 8 1.8103 -12.2100 -0.6086 21 8 3.8904 -10.8709 -0.6076 22 6 2.9048 -11.6268 1.7537 23 9 3.5822 -10.5694 2.3702 24 9 1.6613 -11.8061 2.3694 25 6 2.3395 -8.5384 -0.0027 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5563 -0.8918 28 1 0.6240 -2.5575 0.8880 29 1 2.8712 -3.6047 0.8890 30 1 2.8724 -3.6040 -0.8910 31 1 -0.4039 -6.5388 -0.0021 32 1 -1.5102 -8.7352 -0.0026 33 1 -0.1655 -10.7954 0.0067 34 1 3.4921 -12.5400 1.8492 35 1 3.4182 -8.4862 -0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817256463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:08 Heat of formation + Delta-G solvation = -214.466396 kcal Electronic energy + Delta-G solvation = -25597.803442 eV Core-core repulsion = 21132.040059 eV Total energy + Delta-G solvation = -4465.763383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.056 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -49.83349 -47.98918 -40.45950 -38.97903 -37.99042 -36.86678 -36.20231 -33.42841 -32.14190 -31.65433 -30.23358 -28.20367 -25.63303 -24.27281 -23.69473 -21.48613 -20.86680 -20.13769 -19.09848 -18.80511 -18.25830 -18.01421 -17.17715 -16.44027 -16.36602 -16.13103 -16.06076 -15.89410 -15.06888 -15.04976 -14.78534 -14.57589 -14.38015 -14.23712 -13.76226 -13.41386 -13.15396 -13.03125 -12.95307 -12.86193 -12.76497 -12.40222 -12.07252 -11.53866 -11.32323 -11.15212 -11.10591 -10.82032 -10.76672 -10.41104 -9.92563 -9.74313 -9.70612 -9.50315 -9.35820 -8.48805 -6.15016 -4.19509 -1.20539 0.18942 0.56372 1.71587 2.34223 2.75804 2.84722 2.99703 3.16792 3.26162 3.32452 3.36499 3.36652 3.44763 3.82038 4.33100 4.35567 4.42658 4.68956 4.75009 4.86173 5.21042 5.21958 5.36994 5.47689 5.80413 5.83447 5.99901 6.01773 6.25185 6.55594 6.80543 7.48438 7.55219 7.80301 8.02773 8.18382 8.85881 9.45316 10.96513 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.002286 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.498621 B =12243.031818 C =12579.782571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.351 6.351 12 C 0.500 3.500 13 O -0.506 6.506 14 C -0.134 4.134 15 C 0.002 3.998 16 C -0.148 4.148 17 C 0.012 3.988 18 C -0.674 4.674 19 S 2.479 3.521 20 O -0.888 6.888 21 O -0.883 6.883 22 C -0.210 4.210 23 F -0.160 7.160 24 F -0.164 7.164 25 C 0.045 3.955 26 H 0.264 0.736 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 -27.342 2.422 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.267 6.267 12 C 0.344 3.656 13 O -0.396 6.396 14 C -0.136 4.136 15 C -0.016 4.016 16 C -0.167 4.167 17 C -0.007 4.007 18 C -0.763 4.763 19 S 2.649 3.351 20 O -0.885 6.885 21 O -0.880 6.880 22 C -0.345 4.345 23 F -0.142 7.142 24 F -0.146 7.146 25 C 0.026 3.974 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.010 -27.614 1.844 27.694 hybrid contribution 0.232 1.507 0.882 1.761 sum 1.242 -26.107 2.727 26.279 Atomic orbital electron populations 1.69966 1.06107 1.27063 1.49723 1.24978 0.94928 0.99423 0.94787 0.86459 0.79773 0.82734 0.78282 1.20446 1.21034 1.19689 1.20968 0.93222 0.90038 1.52310 0.92192 1.19181 0.94174 0.88948 0.98914 1.23746 0.96496 0.78151 1.01290 1.86551 1.41991 1.15618 1.82578 1.20896 0.85721 0.85400 0.73611 1.90829 1.14823 1.88242 1.45739 1.19388 0.94201 0.91213 1.08804 1.22064 0.93538 0.99587 0.86440 1.21358 1.01208 0.91590 1.02571 1.21201 0.91148 1.00446 0.87927 1.29899 1.07252 1.16266 1.22916 1.06952 0.76067 0.75979 0.76083 1.93662 1.66488 1.59924 1.68446 1.93694 1.43817 1.82223 1.68298 1.33060 0.85373 0.98069 1.17986 1.93133 1.79353 1.56636 1.85074 1.93098 1.40224 1.95982 1.85250 1.21048 1.01339 0.89276 0.85735 0.92666 0.95292 0.95295 0.92002 0.91985 0.82671 0.83549 0.83232 0.82644 0.82359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.63 5.41 37.16 0.20 1.83 16 11 O -0.35 -6.72 9.47 -40.51 -0.38 -7.10 16 12 C 0.50 8.71 7.90 34.60 0.27 8.99 16 13 O -0.51 -9.97 16.14 -19.24 -0.31 -10.28 16 14 C -0.13 -1.81 5.87 -104.99 -0.62 -2.42 16 15 C 0.00 0.02 9.62 -39.17 -0.38 -0.36 16 16 C -0.15 -1.22 10.03 -39.64 -0.40 -1.61 16 17 C 0.01 0.10 9.47 -39.49 -0.37 -0.28 16 18 C -0.67 -6.38 5.64 -39.64 -0.22 -6.60 16 19 S 2.48 18.78 5.39 -107.50 -0.58 18.20 16 20 O -0.89 -7.77 17.12 -57.54 -0.99 -8.76 16 21 O -0.88 -9.06 17.12 -57.54 -0.98 -10.05 16 22 C -0.21 -1.23 5.94 101.05 0.60 -0.63 16 23 F -0.16 -1.37 17.37 2.25 0.04 -1.33 16 24 F -0.16 -1.17 17.37 2.25 0.04 -1.13 16 25 C 0.05 0.54 9.02 -39.17 -0.35 0.19 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.16 1.59 7.61 -52.49 -0.40 1.20 16 32 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.15 0.80 7.57 -52.49 -0.40 0.41 16 34 H 0.16 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.16 1.88 7.16 -52.49 -0.38 1.50 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -35.02 340.09 -7.40 -42.42 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: -3.25 Total: -4.31 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -1.83 Total: -13.70 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.74 Total: -25.22 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -2.66 Total: -36.19 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.08 Total: -2.46 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 18.78 SS G_CDS: -0.58 Total: 18.20 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.02 -7.40 -42.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817256463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.048 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds