Wall clock time and date at job start Tue Mar 31 2020 17:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47438 * 270.00209 * 3 2 1 5 5 H 1.48502 * 109.47127 * 30.00224 * 3 2 1 6 6 H 1.48500 * 109.47017 * 149.99798 * 3 2 1 7 7 C 1.37873 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00414 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47048 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.34709 * 117.00180 * 179.97438 * 11 10 9 13 13 O 1.21470 * 119.99931 * 359.97438 * 12 11 10 14 14 C 1.47717 * 120.00323 * 179.97438 * 12 11 10 15 15 C 1.39648 * 120.14876 * 0.02562 * 14 12 11 16 16 C 1.37929 * 119.84941 * 179.97438 * 15 14 12 17 17 C 1.38386 * 120.14825 * 0.27872 * 16 15 14 18 18 C 1.38345 * 120.30474 * 359.44560 * 17 16 15 19 19 S 1.76199 * 119.92934 * 180.25574 * 18 17 16 20 20 O 1.42097 * 104.27471 * 26.36616 * 19 18 17 21 21 O 1.42099 * 104.27935 * 154.22364 * 19 18 17 22 22 C 1.81400 * 104.45101 * 270.29545 * 19 18 17 23 23 F 1.39897 * 109.46843 * 300.00064 * 22 19 18 24 24 F 1.39908 * 109.47039 * 59.99653 * 22 19 18 25 25 C 1.37975 * 120.14878 * 0.55131 * 18 17 16 26 26 H 0.96997 * 119.99890 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.47375 * 59.99633 * 9 7 2 28 28 H 1.09003 * 109.46791 * 299.99906 * 9 7 2 29 29 H 1.09000 * 109.47301 * 59.99808 * 10 9 7 30 30 H 1.08997 * 109.46896 * 299.99159 * 10 9 7 31 31 H 1.07999 * 120.07600 * 359.97438 * 15 14 12 32 32 H 1.08002 * 119.92294 * 179.97438 * 16 15 14 33 33 H 1.08000 * 119.84887 * 179.71713 * 17 16 15 34 34 H 1.08996 * 109.47382 * 179.97438 * 22 19 18 35 35 H 1.07997 * 120.07576 * 179.75004 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5192 -4.9196 -0.0020 12 6 2.2528 -6.0494 -0.0024 13 8 3.4658 -5.9858 -0.0027 14 6 1.5822 -7.3655 -0.0023 15 6 0.1878 -7.4423 -0.0024 16 6 -0.4319 -8.6745 -0.0029 17 6 0.3249 -9.8331 0.0025 18 6 1.7066 -9.7644 -0.0031 19 16 2.6604 -11.2459 -0.0029 20 8 1.8103 -12.2100 -0.6086 21 8 3.8904 -10.8709 -0.6076 22 6 2.9048 -11.6268 1.7537 23 9 3.5822 -10.5694 2.3702 24 9 1.6613 -11.8061 2.3694 25 6 2.3395 -8.5384 -0.0027 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5563 -0.8918 28 1 0.6240 -2.5575 0.8880 29 1 2.8712 -3.6047 0.8890 30 1 2.8724 -3.6040 -0.8910 31 1 -0.4039 -6.5388 -0.0021 32 1 -1.5102 -8.7352 -0.0026 33 1 -0.1655 -10.7954 0.0067 34 1 3.4921 -12.5400 1.8492 35 1 3.4182 -8.4862 -0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817256463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:08 Heat of formation + Delta-G solvation = -237.969142 kcal Electronic energy + Delta-G solvation = -25598.822598 eV Core-core repulsion = 21132.040059 eV Total energy + Delta-G solvation = -4466.782538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.056 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.39575 -48.56186 -41.74106 -40.01357 -38.67334 -37.75852 -37.54972 -35.48455 -33.16404 -32.48222 -32.09332 -28.72173 -27.38523 -25.55858 -24.56137 -23.04794 -22.28813 -20.89837 -19.99156 -19.36690 -18.86934 -18.82026 -18.56864 -18.04752 -17.62849 -17.24655 -17.09879 -16.94082 -16.48961 -15.92515 -15.69044 -15.36379 -15.25981 -15.15783 -14.81252 -14.62512 -14.38900 -14.14072 -13.94093 -13.65872 -13.59339 -13.56179 -13.19152 -13.14215 -12.90819 -12.64150 -12.60334 -12.23735 -11.98009 -11.74236 -11.57745 -11.55034 -11.41536 -10.72867 -10.62629 -10.34720 -8.28898 -6.41819 -1.81609 -0.66754 -0.29874 1.06701 1.25527 1.39768 1.42111 1.50685 1.57604 2.06454 2.33907 2.38970 2.45936 2.78717 3.04524 3.05900 3.20888 3.42443 3.59981 3.83007 3.87775 4.09998 4.18095 4.18126 4.30957 4.59012 4.64421 4.72142 4.99502 5.03011 5.18518 5.43831 5.44151 5.51320 5.70722 6.04362 6.54242 6.71475 7.28003 8.83689 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.002286 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.498621 B =12243.031818 C =12579.782571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.090 3.910 11 O -0.354 6.354 12 C 0.499 3.501 13 O -0.537 6.537 14 C -0.161 4.161 15 C -0.005 4.005 16 C -0.137 4.137 17 C 0.021 3.979 18 C -0.682 4.682 19 S 2.502 3.498 20 O -0.897 6.897 21 O -0.915 6.915 22 C -0.199 4.199 23 F -0.175 7.175 24 F -0.166 7.166 25 C 0.034 3.966 26 H 0.268 0.732 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.155 0.845 32 H 0.185 0.815 33 H 0.185 0.815 34 H 0.211 0.789 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 -29.250 2.920 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.589 4.589 8 H 0.082 0.918 9 C -0.005 4.005 10 C 0.017 3.983 11 O -0.271 6.271 12 C 0.345 3.655 13 O -0.429 6.429 14 C -0.163 4.163 15 C -0.024 4.024 16 C -0.155 4.155 17 C 0.002 3.998 18 C -0.769 4.769 19 S 2.673 3.327 20 O -0.894 6.894 21 O -0.912 6.912 22 C -0.337 4.337 23 F -0.157 7.157 24 F -0.148 7.148 25 C 0.014 3.986 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.173 0.827 32 H 0.202 0.798 33 H 0.202 0.798 34 H 0.228 0.772 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.605 -29.517 2.313 29.613 hybrid contribution 0.286 1.905 0.762 2.072 sum 0.891 -27.612 3.075 27.797 Atomic orbital electron populations 1.70080 1.07740 1.28319 1.50323 1.25931 0.95846 1.03317 0.94041 0.85337 0.78544 0.77843 0.78676 1.19561 1.20315 1.18834 1.21365 0.93704 0.91248 1.52602 0.91784 1.18976 0.94269 0.90290 0.96926 1.23266 0.95253 0.78561 1.01236 1.86529 1.41919 1.15502 1.83122 1.21630 0.85592 0.85964 0.72282 1.90798 1.16085 1.88560 1.47410 1.19243 0.95464 0.89189 1.12370 1.22173 0.92308 1.01115 0.86757 1.21775 1.03059 0.90212 1.00449 1.21749 0.90567 1.02022 0.85451 1.30265 1.08474 1.16103 1.22102 1.06327 0.74848 0.74775 0.76718 1.93647 1.66511 1.59491 1.69744 1.93662 1.44853 1.82454 1.70254 1.33033 0.85796 0.99536 1.15323 1.93114 1.79682 1.57778 1.85096 1.93098 1.40659 1.95980 1.85066 1.21020 1.01068 0.89870 0.86605 0.92279 0.97250 0.97215 0.92002 0.92034 0.82691 0.79781 0.79755 0.77246 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.55 -31.12 9.11 25.60 0.23 -30.88 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.03 1.73 5.35 29.85 0.16 1.89 16 10 C 0.09 4.05 5.41 71.98 0.39 4.44 16 11 O -0.35 -14.19 9.47 -56.18 -0.53 -14.72 16 12 C 0.50 18.23 7.90 70.33 0.56 18.79 16 13 O -0.54 -22.22 16.14 19.93 0.32 -21.89 16 14 C -0.16 -4.45 5.87 -20.10 -0.12 -4.57 16 15 C -0.01 -0.11 9.62 22.54 0.22 0.10 16 16 C -0.14 -1.87 10.03 22.23 0.22 -1.65 16 17 C 0.02 0.27 9.47 22.33 0.21 0.49 16 18 C -0.68 -11.96 5.64 22.23 0.13 -11.84 16 19 S 2.50 33.24 5.39 -56.49 -0.30 32.94 16 20 O -0.90 -13.32 17.12 -127.65 -2.19 -15.51 16 21 O -0.91 -18.25 17.12 -127.65 -2.19 -20.43 16 22 C -0.20 -1.74 5.94 113.37 0.67 -1.07 16 23 F -0.18 -2.68 17.37 44.97 0.78 -1.90 16 24 F -0.17 -1.82 17.37 44.97 0.78 -1.04 16 25 C 0.03 0.82 9.02 22.54 0.20 1.02 16 26 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 27 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.16 3.20 7.61 -2.91 -0.02 3.18 16 32 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.19 1.15 7.57 -2.91 -0.02 1.13 16 34 H 0.21 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.15 3.77 7.16 -2.91 -0.02 3.75 16 Total: -1.00 -77.66 340.09 3.47 -74.19 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: 1.14 Total: -0.16 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 3.34 Total: -22.38 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.28 Total: -54.53 kcal Atomic # 8 Polarization: -67.97 SS G_CDS: -4.58 Total: -72.55 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 1.56 Total: -2.94 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 33.24 SS G_CDS: -0.30 Total: 32.94 kcal Total: -77.66 3.47 -74.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817256463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.777 kcal (2) G-P(sol) polarization free energy of solvation -77.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds