Wall clock time and date at job start Tue Mar 31 2020 17:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34715 * 116.99993 * 89.99916 * 12 2 1 14 14 O 1.21469 * 119.99853 * 0.02562 * 13 12 2 15 15 C 1.47718 * 119.99923 * 180.02562 * 13 12 2 16 16 C 1.39653 * 120.15243 * 359.72498 * 15 13 12 17 17 C 1.37921 * 119.84777 * 179.74337 * 16 15 13 18 18 C 1.38390 * 120.15058 * 0.52970 * 17 16 15 19 19 C 1.38346 * 120.30379 * 359.72578 * 18 17 16 20 20 S 1.76199 * 119.92457 * 179.97438 * 19 18 17 21 21 O 1.42100 * 104.27514 * 26.09672 * 20 19 18 22 22 O 1.42102 * 104.27332 * 153.94571 * 20 19 18 23 23 C 1.81392 * 104.44948 * 270.02003 * 20 19 18 24 24 F 1.39902 * 109.47441 * 299.99718 * 23 20 19 25 25 F 1.39902 * 109.47279 * 60.00408 * 23 20 19 26 26 C 1.37967 * 120.15039 * 0.02562 * 19 18 17 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 31 31 H 1.08001 * 120.07065 * 359.97438 * 16 15 13 32 32 H 1.07996 * 119.92217 * 180.25321 * 17 16 15 33 33 H 1.08001 * 119.84726 * 179.74383 * 18 17 16 34 34 H 1.09003 * 109.46933 * 179.97438 * 23 20 19 35 35 H 1.07996 * 120.07575 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 8 2.0140 -0.6844 -1.1856 13 6 2.2178 0.0668 -2.2851 14 8 1.9977 1.2610 -2.2541 15 6 2.7090 -0.5617 -3.5284 16 6 2.9686 -1.9334 -3.5659 17 6 3.4220 -2.5146 -4.7317 18 6 3.6302 -1.7398 -5.8593 19 6 3.3802 -0.3795 -5.8276 20 16 3.6495 0.5975 -7.2690 21 8 3.4986 -0.3175 -8.3457 22 8 2.7660 1.6998 -7.1152 23 6 5.3748 1.1405 -7.1319 24 9 5.5377 1.8848 -5.9586 25 9 6.2142 0.0219 -7.0950 26 6 2.9215 0.2140 -4.6697 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.9033 -0.5281 4.4375 31 1 2.8110 -2.5382 -2.6852 32 1 3.6191 -3.5759 -4.7632 33 1 3.9893 -2.1994 -6.7683 34 1 5.6308 1.7580 -7.9929 35 1 2.7264 1.2759 -4.6464 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817716673.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:29 Heat of formation + Delta-G solvation = -199.525936 kcal Electronic energy + Delta-G solvation = -26311.324042 eV Core-core repulsion = 21846.208526 eV Total energy + Delta-G solvation = -4465.115516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.056 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -49.75796 -47.91434 -40.28528 -38.84470 -37.91561 -36.79438 -36.03871 -33.33264 -31.98988 -31.53887 -30.54250 -28.13155 -25.40437 -24.75988 -23.70585 -21.83994 -20.57079 -19.89072 -18.93897 -18.73091 -18.18366 -17.96167 -16.97569 -16.79297 -16.30146 -16.13352 -15.84866 -15.44519 -15.03752 -14.94581 -14.70940 -14.63034 -14.22671 -14.15954 -13.41503 -13.32477 -13.12689 -12.88560 -12.86628 -12.78346 -12.69313 -12.37462 -12.14000 -11.87242 -11.59959 -11.43325 -11.05838 -10.95481 -10.31488 -10.18715 -9.89439 -9.79893 -9.69588 -9.39495 -9.20968 -8.74710 -6.28676 -4.31882 -1.12665 0.31062 0.68501 1.79875 2.49411 2.86314 2.97724 3.14984 3.20781 3.23328 3.27926 3.29960 3.51913 3.52897 3.90460 4.21613 4.46102 4.51782 4.82717 4.88440 4.97222 5.02634 5.34271 5.48019 5.59365 5.91439 5.96372 6.08420 6.21402 6.31310 6.37691 6.52226 6.92314 7.23070 7.40900 8.09131 8.44539 8.76466 9.27800 10.83227 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.002948 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.339310 B = 9494.896914 C = 9726.474032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.192 3.808 3 H 0.049 0.951 4 C -0.527 4.527 5 H 0.088 0.912 6 C 0.081 3.919 7 N -0.887 5.887 8 Si 0.879 3.121 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.262 1.262 12 O -0.335 6.335 13 C 0.496 3.504 14 O -0.510 6.510 15 C -0.130 4.130 16 C 0.002 3.998 17 C -0.149 4.149 18 C 0.010 3.990 19 C -0.674 4.674 20 S 2.480 3.520 21 O -0.889 6.889 22 O -0.884 6.884 23 C -0.210 4.210 24 F -0.160 7.160 25 F -0.164 7.164 26 C 0.044 3.956 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.270 0.730 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -0.203 -24.006 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.138 3.862 3 H 0.066 0.934 4 C -0.565 4.565 5 H 0.106 0.894 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.708 3.292 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.186 1.186 12 O -0.250 6.250 13 C 0.340 3.660 14 O -0.401 6.401 15 C -0.133 4.133 16 C -0.016 4.016 17 C -0.168 4.168 18 C -0.010 4.010 19 C -0.764 4.764 20 S 2.650 3.350 21 O -0.887 6.887 22 O -0.881 6.881 23 C -0.345 4.345 24 F -0.142 7.142 25 F -0.146 7.146 26 C 0.025 3.975 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.173 0.827 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.952 0.355 -24.351 24.852 hybrid contribution 0.089 0.691 1.091 1.294 sum 5.041 1.046 -23.261 23.824 Atomic orbital electron populations 1.22538 0.98274 1.01993 1.00026 1.21010 0.90604 0.94575 0.79989 0.93371 1.20745 1.33640 1.14958 0.87153 0.89434 1.24719 0.95601 0.96733 0.95205 1.69832 1.44562 1.39889 0.98043 0.86972 0.80764 0.83590 0.77905 1.19916 1.21587 1.18648 1.86544 1.75727 1.42314 1.20457 1.20898 0.75170 0.85331 0.84585 1.90798 1.48603 1.16010 1.84655 1.19454 1.06349 0.94654 0.92808 1.22069 0.87220 0.93651 0.98670 1.21340 1.01894 1.01124 0.92451 1.21171 0.89774 0.91034 0.98976 1.29861 1.20693 1.08002 1.17804 1.06903 0.76084 0.76067 0.75911 1.93656 1.81950 1.61915 1.51139 1.93691 1.55076 1.53446 1.85907 1.33053 1.18359 0.89753 0.93313 1.93140 1.96787 1.76337 1.47888 1.93095 1.73798 1.50642 1.97031 1.21049 0.86645 1.01020 0.88831 0.92364 0.91679 0.94288 0.91972 0.82669 0.83671 0.83334 0.82754 0.82416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 9.03 37.16 0.34 -3.48 16 2 C 0.19 4.72 2.16 -27.89 -0.06 4.66 16 3 H 0.05 1.25 6.22 -51.93 -0.32 0.93 16 4 C -0.53 -14.73 9.48 -34.44 -0.33 -15.05 16 5 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 6 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 7 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 8 Si 0.88 21.30 24.37 -169.99 -4.14 17.15 16 9 H -0.27 -6.33 6.87 56.52 0.39 -5.94 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 12 O -0.33 -7.32 9.12 -40.53 -0.37 -7.69 16 13 C 0.50 9.76 7.87 34.60 0.27 10.03 16 14 O -0.51 -11.19 15.61 -19.24 -0.30 -11.49 16 15 C -0.13 -1.97 5.87 -104.98 -0.62 -2.59 16 16 C 0.00 0.03 9.62 -39.17 -0.38 -0.35 16 17 C -0.15 -1.38 10.03 -39.64 -0.40 -1.77 16 18 C 0.01 0.09 9.47 -39.49 -0.37 -0.29 16 19 C -0.67 -7.05 5.64 -39.64 -0.22 -7.27 16 20 S 2.48 20.64 5.39 -107.50 -0.58 20.06 16 21 O -0.89 -8.33 17.12 -57.54 -0.98 -9.32 16 22 O -0.88 -9.73 17.12 -57.54 -0.98 -10.72 16 23 C -0.21 -1.40 5.94 101.05 0.60 -0.80 16 24 F -0.16 -1.53 17.37 2.25 0.04 -1.49 16 25 F -0.16 -1.31 17.37 2.25 0.04 -1.27 16 26 C 0.04 0.58 9.02 -39.17 -0.35 0.23 16 27 H 0.06 1.32 3.27 -51.93 -0.17 1.15 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.16 1.83 7.61 -52.49 -0.40 1.43 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.15 0.92 7.56 -52.49 -0.40 0.52 16 34 H 0.16 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.16 2.08 7.16 -52.49 -0.38 1.71 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -35.23 328.16 -6.14 -41.37 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -2.96 Total: -1.64 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -1.62 Total: -14.50 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.77 Total: -25.41 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -2.64 Total: -39.22 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.15 kcal Atomic # 16 Polarization: 20.64 SS G_CDS: -0.58 Total: 20.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.23 -6.14 -41.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817716673.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.158 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds