Wall clock time and date at job start Tue Mar 31 2020 17:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34715 * 116.99993 * 89.99916 * 12 2 1 14 14 O 1.21469 * 119.99853 * 0.02562 * 13 12 2 15 15 C 1.47718 * 119.99923 * 180.02562 * 13 12 2 16 16 C 1.39653 * 120.15243 * 359.72498 * 15 13 12 17 17 C 1.37921 * 119.84777 * 179.74337 * 16 15 13 18 18 C 1.38390 * 120.15058 * 0.52970 * 17 16 15 19 19 C 1.38346 * 120.30379 * 359.72578 * 18 17 16 20 20 S 1.76199 * 119.92457 * 179.97438 * 19 18 17 21 21 O 1.42100 * 104.27514 * 26.09672 * 20 19 18 22 22 O 1.42102 * 104.27332 * 153.94571 * 20 19 18 23 23 C 1.81392 * 104.44948 * 270.02003 * 20 19 18 24 24 F 1.39902 * 109.47441 * 299.99718 * 23 20 19 25 25 F 1.39902 * 109.47279 * 60.00408 * 23 20 19 26 26 C 1.37967 * 120.15039 * 0.02562 * 19 18 17 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 31 31 H 1.08001 * 120.07065 * 359.97438 * 16 15 13 32 32 H 1.07996 * 119.92217 * 180.25321 * 17 16 15 33 33 H 1.08001 * 119.84726 * 179.74383 * 18 17 16 34 34 H 1.09003 * 109.46933 * 179.97438 * 23 20 19 35 35 H 1.07996 * 120.07575 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 8 2.0140 -0.6844 -1.1856 13 6 2.2178 0.0668 -2.2851 14 8 1.9977 1.2610 -2.2541 15 6 2.7090 -0.5617 -3.5284 16 6 2.9686 -1.9334 -3.5659 17 6 3.4220 -2.5146 -4.7317 18 6 3.6302 -1.7398 -5.8593 19 6 3.3802 -0.3795 -5.8276 20 16 3.6495 0.5975 -7.2690 21 8 3.4986 -0.3175 -8.3457 22 8 2.7660 1.6998 -7.1152 23 6 5.3748 1.1405 -7.1319 24 9 5.5377 1.8848 -5.9586 25 9 6.2142 0.0219 -7.0950 26 6 2.9215 0.2140 -4.6697 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.9033 -0.5281 4.4375 31 1 2.8110 -2.5382 -2.6852 32 1 3.6191 -3.5759 -4.7632 33 1 3.9893 -2.1994 -6.7683 34 1 5.6308 1.7580 -7.9929 35 1 2.7264 1.2759 -4.6464 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817716673.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:28 Heat of formation + Delta-G solvation = -225.004567 kcal Electronic energy + Delta-G solvation = -26312.428878 eV Core-core repulsion = 21846.208526 eV Total energy + Delta-G solvation = -4466.220352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.056 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.38731 -48.55544 -41.69705 -40.00872 -38.65748 -37.75192 -37.53573 -35.35319 -33.23238 -32.49035 -32.25354 -28.71268 -27.40193 -26.06907 -24.61284 -23.31259 -21.92549 -20.83489 -20.02200 -19.35614 -19.02602 -18.81241 -18.56252 -18.36130 -17.38320 -17.16195 -17.06430 -16.93210 -16.38694 -15.91119 -15.66585 -15.35673 -15.20110 -15.03679 -14.80556 -14.64534 -14.37973 -14.20693 -13.93683 -13.79236 -13.64413 -13.59072 -13.57259 -13.45425 -12.91791 -12.88583 -12.28272 -12.21689 -11.86988 -11.74666 -11.71167 -11.50608 -11.27713 -10.86775 -10.70372 -10.32558 -8.47050 -6.56195 -1.80009 -0.63550 -0.27497 1.08549 1.22262 1.30395 1.31898 1.39393 1.68679 2.08409 2.17768 2.35896 2.48479 2.79666 2.85776 3.04887 3.22714 3.47655 3.61935 3.84895 3.89954 4.11622 4.16735 4.28368 4.37455 4.49675 4.60553 4.67776 4.76754 5.02906 5.05655 5.14002 5.28968 5.49773 5.54112 6.07184 6.47358 6.70676 7.08174 8.68611 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.002948 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.339310 B = 9494.896914 C = 9726.474032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.193 3.807 3 H 0.032 0.968 4 C -0.540 4.540 5 H 0.051 0.949 6 C 0.034 3.966 7 N -0.927 5.927 8 Si 0.937 3.063 9 H -0.250 1.250 10 H -0.282 1.282 11 H -0.259 1.259 12 O -0.342 6.342 13 C 0.493 3.507 14 O -0.541 6.541 15 C -0.160 4.160 16 C -0.006 4.006 17 C -0.136 4.136 18 C 0.020 3.980 19 C -0.682 4.682 20 S 2.506 3.494 21 O -0.895 6.895 22 O -0.915 6.915 23 C -0.200 4.200 24 F -0.176 7.176 25 F -0.167 7.167 26 C 0.033 3.967 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.276 0.724 31 H 0.153 0.847 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.211 0.789 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.724 -0.378 -26.767 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.138 3.862 3 H 0.049 0.951 4 C -0.577 4.577 5 H 0.069 0.931 6 C -0.167 4.167 7 N -0.565 5.565 8 Si 0.762 3.238 9 H -0.175 1.175 10 H -0.209 1.209 11 H -0.184 1.184 12 O -0.258 6.258 13 C 0.340 3.660 14 O -0.434 6.434 15 C -0.162 4.162 16 C -0.024 4.024 17 C -0.154 4.154 18 C 0.002 3.998 19 C -0.769 4.769 20 S 2.677 3.323 21 O -0.893 6.893 22 O -0.912 6.912 23 C -0.338 4.338 24 F -0.158 7.158 25 F -0.148 7.148 26 C 0.013 3.987 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.203 0.797 33 H 0.204 0.796 34 H 0.227 0.773 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.154 0.138 -27.111 27.597 hybrid contribution 0.187 0.655 1.783 1.909 sum 5.341 0.793 -25.328 25.897 Atomic orbital electron populations 1.22430 0.96111 1.02870 1.00809 1.20718 0.92200 0.93175 0.80068 0.95052 1.20901 1.33502 1.14153 0.89160 0.93064 1.25512 0.96810 0.99708 0.94638 1.69945 1.46027 1.41775 0.98785 0.86025 0.80034 0.79705 0.77998 1.17475 1.20887 1.18400 1.86526 1.76232 1.42459 1.20599 1.21721 0.74178 0.85121 0.85010 1.90760 1.50230 1.17265 1.85124 1.19285 1.09526 0.96158 0.91222 1.22152 0.87810 0.92362 1.00111 1.21766 0.99732 1.02978 0.90949 1.21747 0.87570 0.90313 1.00186 1.30275 1.19776 1.09370 1.17490 1.06241 0.76499 0.74965 0.74620 1.93644 1.82811 1.62078 1.50729 1.93660 1.57406 1.54181 1.85960 1.33051 1.16170 0.90107 0.94443 1.93118 1.96675 1.76729 1.49253 1.93095 1.73638 1.51018 1.97076 1.21007 0.87568 1.00668 0.89416 0.92404 0.90807 0.92537 0.91450 0.82979 0.79718 0.79612 0.77286 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.29 9.03 71.98 0.65 -6.64 16 2 C 0.19 9.73 2.16 29.85 0.06 9.80 16 3 H 0.03 1.69 6.22 -2.39 -0.01 1.68 16 4 C -0.54 -31.29 9.48 25.60 0.24 -31.04 16 5 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 6 C 0.03 1.92 5.45 84.65 0.46 2.39 16 7 N -0.93 -56.08 13.96 21.45 0.30 -55.78 16 8 Si 0.94 43.91 24.37 68.60 1.67 45.58 16 9 H -0.25 -10.76 6.87 99.48 0.68 -10.07 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.26 -12.00 6.53 99.48 0.65 -11.35 16 12 O -0.34 -15.59 9.12 -56.25 -0.51 -16.10 16 13 C 0.49 20.23 7.87 70.33 0.55 20.78 16 14 O -0.54 -24.76 15.61 19.94 0.31 -24.45 16 15 C -0.16 -4.94 5.87 -20.10 -0.12 -5.06 16 16 C -0.01 -0.15 9.62 22.54 0.22 0.07 16 17 C -0.14 -2.11 10.03 22.23 0.22 -1.89 16 18 C 0.02 0.30 9.47 22.33 0.21 0.51 16 19 C -0.68 -13.10 5.64 22.23 0.13 -12.98 16 20 S 2.51 36.08 5.39 -56.49 -0.30 35.77 16 21 O -0.90 -13.96 17.12 -127.65 -2.18 -16.15 16 22 O -0.91 -19.26 17.12 -127.65 -2.19 -21.45 16 23 C -0.20 -2.04 5.94 113.37 0.67 -1.37 16 24 F -0.18 -3.04 17.37 44.97 0.78 -2.26 16 25 F -0.17 -2.07 17.37 44.97 0.78 -1.29 16 26 C 0.03 0.87 9.02 22.54 0.20 1.07 16 27 H 0.06 2.54 3.27 -2.39 -0.01 2.53 16 28 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.15 3.64 7.61 -2.91 -0.02 3.62 16 32 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.19 1.37 7.56 -2.91 -0.02 1.35 16 34 H 0.21 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.15 4.12 7.16 -2.91 -0.02 4.09 16 Total: -1.00 -79.55 328.16 3.24 -76.31 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.08 Total: 4.17 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 3.51 Total: -24.36 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.30 Total: -55.78 kcal Atomic # 8 Polarization: -73.58 SS G_CDS: -4.57 Total: -78.15 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 1.56 Total: -3.54 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.67 Total: 45.58 kcal Atomic # 16 Polarization: 36.08 SS G_CDS: -0.30 Total: 35.77 kcal Total: -79.55 3.24 -76.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817716673.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.693 kcal (2) G-P(sol) polarization free energy of solvation -79.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds